We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • HUMAN PATHOLOGY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
ABCC2
  • TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA LIVER

GENE/PROTEIN

Antibody validation


Dictionary

Liver

Tissue proteome

Liver

LIVER - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:67.6TPM
GTEx:38.3RPKM
FANTOM5:109.3Tags Per Million

LIVER - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Bile duct cells:Not detected
Hepatocytes:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA004860

 

Antibody CAB037271

 

Bile duct cells

Not detected   Not detected  

Hepatocytes

Medium   High  
   
   
   

LIVER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

67.6

N/A Female, age 60 Sample 1
TPM: 40.9
overview Male, age 54 Sample 2
TPM: 82.3
Cell types%
Hepatocytes: 80
Fibroblasts: 15
Other cell types: 5
overview Male, age 74 Sample 3
TPM: 57.2
Cell types%
Hepatocytes: 85
Fibroblasts: 5
Other cell types: 10
overview Female, age 62 Sample 4
TPM: 72.6
Cell types%
Hepatocytes: 70
Fibroblasts: 10
Other cell types: 20
overview Male, age 78 Sample 5
TPM: 49.5
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Male, age 53 Sample 6
TPM: 93.7
Cell types%
Hepatocytes: 80
Fibroblasts: 5
Other cell types: 15
overview Male, age 77 Sample 7
TPM: 77.2
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Female, age 72 Sample 8
TPM: 48.5
Cell types%
Hepatocytes: 50
Fibroblasts: 10
Other cell types: 40
overview Male, age 70 Sample 9
TPM: 76.8
Cell types%
Hepatocytes: 65
Fibroblasts: 10
Other cell types: 25
overview Female, age 23 Sample 10
TPM: 77.2
Cell types%
Hepatocytes: 70
Fibroblasts: 5
Other cell types: 25

LIVER - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

38.3

GTEx sample id

Sample description

RPKM

Liver
RPKM: 38.3
Samples: 119

Max RPKM: 128.4
Min RPKM: 3.9
Std RPKM: 18.6
Median RPKM: 38.0
GTEX-YFC4-1526-SM-5IFJS 40-49 years, female 128.4
GTEX-ZF29-2026-SM-4WWB7 60-69 years, female 89.1
GTEX-13NZ9-1326-SM-5MR3V 50-59 years, male 79.6
GTEX-P78B-1326-SM-3P611 40-49 years, female 77.5
GTEX-13OW6-2626-SM-5IFF2 50-59 years, male 72.4
GTEX-R53T-0326-SM-48FEC 50-59 years, female 69.3
GTEX-X4EO-1126-SM-4QARQ 60-69 years, female 68.9
GTEX-Y5LM-0426-SM-4VBRO 40-49 years, female 67.2
GTEX-13113-1326-SM-5GCOI 60-69 years, female 64.8
GTEX-1497J-0726-SM-5Q5D1 60-69 years, male 63.6
GTEX-UPIC-0926-SM-4IHLV 20-29 years, female 61.9
GTEX-14AS3-0126-SM-5Q5F4 40-49 years, female 59.3
GTEX-147F4-1426-SM-5LUA8 50-59 years, male 59.0
GTEX-11GSP-0626-SM-5986T 60-69 years, female 58.0
GTEX-ZVT3-1626-SM-5GU66 60-69 years, female 56.8
GTEX-146FH-1526-SM-5NQBU 50-59 years, female 56.6
GTEX-U3ZN-0226-SM-3DB8D 30-39 years, female 56.6
GTEX-13FTW-1126-SM-5J2NV 40-49 years, male 56.4
GTEX-11DXY-0526-SM-5EGGQ 60-69 years, male 54.8
GTEX-Z9EW-0426-SM-5CVM9 40-49 years, male 54.6
GTEX-YEC4-0826-SM-5P9FV 40-49 years, male 54.4
GTEX-X4EP-1026-SM-4QAS5 60-69 years, female 53.3
GTEX-13NYB-1026-SM-5IFH3 40-49 years, male 51.2
GTEX-ZYT6-0626-SM-5E45V 30-39 years, male 51.0
GTEX-RN64-1826-SM-48FDV 50-59 years, male 49.7
GTEX-QESD-2026-SM-447BI 20-29 years, male 49.3
GTEX-YECK-1926-SM-4W21H 60-69 years, male 48.6
GTEX-ZVT4-0626-SM-5E45T 50-59 years, female 47.9
GTEX-ZZPU-0426-SM-5GZYH 50-59 years, female 47.3
GTEX-12696-0826-SM-5EGGE 60-69 years, male 46.7
GTEX-131YS-1626-SM-5HL6C 60-69 years, female 46.1
GTEX-REY6-1226-SM-48FDR 60-69 years, male 46.0
GTEX-13PVR-0126-SM-5S2PY 60-69 years, female 45.7
GTEX-X261-1726-SM-4PQYT 50-59 years, male 45.5
GTEX-11NUK-1226-SM-5P9GM 50-59 years, male 45.1
GTEX-WZTO-0626-SM-4PQYY 40-49 years, male 45.1
GTEX-11OF3-0726-SM-5BC4Z 60-69 years, male 45.0
GTEX-QEL4-1226-SM-447A4 50-59 years, male 44.8
GTEX-13O3O-1826-SM-5IFGW 60-69 years, female 44.5
GTEX-11ZTS-1426-SM-5EQMM 60-69 years, female 43.7
GTEX-RNOR-1426-SM-48FDJ 50-59 years, female 43.6
GTEX-11EQ9-0526-SM-5A5JZ 30-39 years, male 42.9
GTEX-11NV4-1326-SM-5HL6V 60-69 years, male 42.0
GTEX-OOBJ-0826-SM-3NB2K 60-69 years, male 41.5
GTEX-11WQC-0726-SM-5EQMR 60-69 years, male 41.0
GTEX-1399R-1226-SM-5P9GF 30-39 years, male 41.0
GTEX-YB5E-0326-SM-5IFHU 40-49 years, male 40.8
GTEX-145MF-0826-SM-5QGQA 50-59 years, male 40.7
GTEX-RM2N-1926-SM-48FCU 50-59 years, male 40.6
GTEX-XOTO-0826-SM-4B65O 50-59 years, male 40.4
GTEX-RTLS-1326-SM-46MUN 60-69 years, female 40.2
GTEX-ZAB4-0826-SM-5LU9D 40-49 years, male 40.0
GTEX-ZVP2-0626-SM-51MSO 50-59 years, male 39.4
GTEX-145LU-1326-SM-5LU9N 50-59 years, male 39.1
GTEX-14A5I-1726-SM-5QGQ5 50-59 years, female 39.0
GTEX-ZF2S-3026-SM-4WWCH 50-59 years, female 38.7
GTEX-RWSA-1426-SM-47JXA 40-49 years, male 38.6
GTEX-13QJC-0726-SM-5RQJK 60-69 years, female 38.3
GTEX-13FTZ-0726-SM-5IFFY 60-69 years, male 38.1
GTEX-139TS-1426-SM-5IFJD 60-69 years, male 38.0
GTEX-SJXC-1226-SM-4DM78 60-69 years, male 37.9
GTEX-13N11-0926-SM-5IJG2 50-59 years, female 37.7
GTEX-XBEC-1526-SM-4AT68 50-59 years, male 37.7
GTEX-11DXZ-0126-SM-5EGGY 50-59 years, male 37.5
GTEX-T6MN-1226-SM-3NMA5 50-59 years, male 37.3
GTEX-ZTPG-1426-SM-51MT3 20-29 years, female 35.7
GTEX-11ZVC-0726-SM-5FQT9 50-59 years, female 35.4
GTEX-14E1K-0326-SM-5S2PE 50-59 years, male 35.2
GTEX-1399T-0826-SM-5IFES 60-69 years, male 35.1
GTEX-13SLX-1226-SM-5S2Q6 50-59 years, female 35.0
GTEX-ZAB5-0426-SM-5CVMI 50-59 years, male 34.8
GTEX-S4Z8-0526-SM-4AD4T 60-69 years, male 34.0
GTEX-13112-1426-SM-5EGH8 50-59 years, male 33.9
GTEX-PX3G-0826-SM-48TZS 20-29 years, female 33.9
GTEX-X3Y1-2726-SM-4PQZH 40-49 years, male 33.6
GTEX-ZPU1-0826-SM-57WG2 40-49 years, male 33.3
GTEX-13FLV-0326-SM-5N9DJ 50-59 years, male 32.8
GTEX-12WSM-0726-SM-5GCOW 60-69 years, male 32.6
GTEX-WFON-1726-SM-4LVMQ 40-49 years, male 32.6
GTEX-13VXU-0926-SM-5IFFH 50-59 years, male 31.1
GTEX-Y5V5-0926-SM-4VBPZ 60-69 years, female 30.0
GTEX-12WSI-0226-SM-5GCNA 50-59 years, male 29.0
GTEX-13NZB-0626-SM-5IFH6 30-39 years, male 28.5
GTEX-WQUQ-1926-SM-4OOSA 60-69 years, male 28.0
GTEX-1212Z-0226-SM-59HLF 60-69 years, male 26.7
GTEX-QV44-0326-SM-4R1KD 50-59 years, male 26.4
GTEX-139TU-0826-SM-5IJFG 60-69 years, male 25.7
GTEX-13N2G-0926-SM-5IFGJ 60-69 years, male 25.7
GTEX-Q734-0326-SM-48U15 40-49 years, female 25.7
GTEX-1269C-0626-SM-5FQSS 60-69 years, female 25.6
GTEX-12WSD-1426-SM-5GCN9 60-69 years, female 24.5
GTEX-UPK5-1426-SM-4JBHH 40-49 years, male 24.4
GTEX-QEG4-1826-SM-4R1JN 30-39 years, male 23.3
GTEX-14DAQ-1726-SM-5S2R2 60-69 years, female 23.2
GTEX-ZYY3-0626-SM-5NQ6W 60-69 years, female 23.2
GTEX-12ZZZ-1326-SM-59HKW 60-69 years, male 22.6
GTEX-11ZUS-2526-SM-59872 30-39 years, male 22.4
GTEX-131XH-0626-SM-5LZWH 50-59 years, male 22.0
GTEX-147JS-1126-SM-5RQIW 60-69 years, male 21.7
GTEX-S33H-1626-SM-4AD68 30-39 years, male 21.6
GTEX-RU72-1426-SM-46MUF 50-59 years, female 19.3
GTEX-WYVS-1926-SM-4PQZ2 40-49 years, female 19.3
GTEX-12WSL-0226-SM-5CVMJ 50-59 years, male 19.2
GTEX-UTHO-2426-SM-4JBHD 60-69 years, male 19.2
GTEX-Q2AG-1126-SM-48U1P 40-49 years, female 18.9
GTEX-12WSG-0626-SM-5FQTQ 50-59 years, female 17.3
GTEX-12KS4-1326-SM-5LUB3 30-39 years, male 15.2
GTEX-TKQ2-1726-SM-4DXUP 50-59 years, male 15.0
GTEX-S32W-1926-SM-4AD63 50-59 years, female 14.2
GTEX-14753-1626-SM-5NQ9L 60-69 years, male 13.9
GTEX-132NY-0926-SM-5P9G3 60-69 years, male 13.2
GTEX-139YR-0226-SM-5IFEM 50-59 years, male 12.9
GTEX-QDVN-0826-SM-48TZ2 50-59 years, male 12.0
GTEX-VUSG-0126-SM-4KL1X 50-59 years, male 11.1
GTEX-145MO-2326-SM-5NQ9K 60-69 years, male 10.1
GTEX-131XE-0326-SM-5LZVO 50-59 years, male 6.8
GTEX-14C38-1526-SM-5RQJ7 50-59 years, male 5.9
GTEX-X4XY-1626-SM-46MVN 60-69 years, male 5.4
GTEX-144GM-1326-SM-5LU5E 20-29 years, male 3.9
Show all

LIVER - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

109.3

FANTOM5 sample id

Sample description

Tags Per Million

Liver
Tags Per Million: 109.3
FF:10018-101C9 64,69,70 years, mixed 109.3

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.