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TISSUE ATLAS PRIMARY DATA BREAST

GENE/PROTEIN

Antibody validation


Dictionary

Breast

BREAST - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:122.2TPM
GTEx:215.7RPKM
FANTOM5:97.2Tags Per Million

BREAST - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Adipocytes:Not detected
Glandular cells:Medium
Myoepithelial cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA019006

 

Antibody HPA020595

 

Adipocytes

Not detected   Not detected  

Glandular cells

Medium   Medium  

Myoepithelial cells

Medium   Low  
   
   
   

BREAST - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

122.2

overview Female, age 52 Sample 1
TPM: 88.6
Cell types%
Glandular cells: 15
Adipocytes: 5
Other cell types: 80
overview Female, age 80 Sample 2
TPM: 166.8
Cell types%
Glandular cells: 5
Adipocytes: 15
Other cell types: 80
overview Female, age 47 Sample 3
TPM: 135.8
Cell types%
Glandular cells: 5
Adipocytes: 5
Other cell types: 90
overview Female, age 38 Sample 4
TPM: 97.5
Cell types%
Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

215.7

GTEx sample id

Sample description

RPKM

Breast - Mammary Tissue
RPKM: 215.7
Samples: 214

Max RPKM: 466.4
Min RPKM: 101.4
Std RPKM: 56.4
Median RPKM: 206.9
GTEX-139T8-0826-SM-5L3DE 60-69 years, male 466.4
GTEX-XUZC-1626-SM-4BRVP 30-39 years, female 408.3
GTEX-SIU7-1626-SM-4BRUK 50-59 years, male 395.7
GTEX-132Q8-1426-SM-5EGK7 60-69 years, male 368.6
GTEX-ZWKS-2826-SM-5NQ74 30-39 years, male 358.8
GTEX-R3RS-0626-SM-48FE1 40-49 years, female 348.2
GTEX-1117F-2826-SM-5GZXL 60-69 years, female 322.2
GTEX-XUJ4-1926-SM-4BOOV 60-69 years, female 321.6
GTEX-13FTY-2226-SM-5J1ND 40-49 years, female 316.9
GTEX-S4Q7-1126-SM-4AD6R 20-29 years, male 312.2
GTEX-XQ8I-2426-SM-4WAXY 50-59 years, male 311.7
GTEX-WY7C-2726-SM-3NB3P 50-59 years, male 311.6
GTEX-11I78-2226-SM-5PNYA 50-59 years, female 302.0
GTEX-XV7Q-2326-SM-4BRVZ 40-49 years, female 302.0
GTEX-13S86-1226-SM-5S2OA 40-49 years, male 301.9
GTEX-13NZ8-0126-SM-5IJCT 60-69 years, female 300.5
GTEX-11LCK-2426-SM-5HL5F 30-39 years, male 300.4
GTEX-QEL4-2126-SM-447AE 50-59 years, male 298.1
GTEX-13PL6-2926-SM-5L3I2 40-49 years, female 296.7
GTEX-11DZ1-0326-SM-5N9BN 50-59 years, male 294.3
GTEX-YFC4-1426-SM-5IFJG 40-49 years, female 294.2
GTEX-13N11-1726-SM-5J1OJ 50-59 years, female 291.3
GTEX-T5JW-2026-SM-4DM63 20-29 years, female 289.4
GTEX-13NZ9-1026-SM-5MR5K 50-59 years, male 289.1
GTEX-ZAJG-0626-SM-5HL8X 50-59 years, female 287.3
GTEX-1192X-2326-SM-5987X 50-59 years, male 285.6
GTEX-ZVE2-1226-SM-5NQ8R 50-59 years, male 285.4
GTEX-Y5LM-1726-SM-4VDSX 40-49 years, female 283.7
GTEX-XMD1-0826-SM-4AT52 60-69 years, male 283.0
GTEX-14ABY-2126-SM-5QGQZ 50-59 years, male 281.2
GTEX-13NZB-2126-SM-5MR4Y 30-39 years, male 280.3
GTEX-ZXES-0826-SM-5E43C 30-39 years, female 279.8
GTEX-YB5E-1726-SM-5IFJ3 40-49 years, male 279.7
GTEX-T2YK-2226-SM-32QPT 50-59 years, male 276.2
GTEX-S33H-0326-SM-4AD6N 30-39 years, male 275.5
GTEX-QEG5-0726-SM-4R1JQ 20-29 years, male 269.9
GTEX-139TU-0626-SM-5KM3X 60-69 years, male 268.6
GTEX-QDT8-0626-SM-48TYW 30-39 years, female 263.0
GTEX-11ONC-2126-SM-5HL6E 60-69 years, male 261.6
GTEX-Q2AG-0326-SM-48U1O 40-49 years, female 261.6
GTEX-133LE-1726-SM-5K7VQ 20-29 years, female 261.3
GTEX-ZLV1-1426-SM-4WWES 60-69 years, female 260.3
GTEX-Y3IK-2326-SM-4WWDT 50-59 years, female 259.6
GTEX-13O3O-0826-SM-5K7WE 60-69 years, female 259.1
GTEX-13O3Q-2226-SM-5KM4O 50-59 years, male 255.8
GTEX-12WSN-1326-SM-5GCNT 40-49 years, male 253.0
GTEX-U412-1826-SM-4DXTJ 60-69 years, male 252.6
GTEX-132AR-0826-SM-5EGK6 50-59 years, female 251.9
GTEX-R55D-0826-SM-48FEA 50-59 years, male 251.7
GTEX-VUSG-2226-SM-4KKZO 50-59 years, male 251.1
GTEX-XUW1-2326-SM-4BOO5 50-59 years, female 249.5
GTEX-11EMC-2026-SM-5A5JV 60-69 years, female 245.7
GTEX-111YS-1926-SM-5GICC 60-69 years, male 245.5
GTEX-ZTTD-1026-SM-51MRD 50-59 years, male 244.1
GTEX-146FH-0826-SM-5SI8T 50-59 years, female 243.5
GTEX-11EQ9-1826-SM-5Q5AJ 30-39 years, male 242.2
GTEX-S32W-2026-SM-4AD6E 50-59 years, female 241.2
GTEX-VJWN-0726-SM-3GIJ8 50-59 years, female 241.1
GTEX-WYBS-0926-SM-3NM94 60-69 years, female 240.4
GTEX-SE5C-2126-SM-4BRUJ 40-49 years, female 238.3
GTEX-13113-1726-SM-5GCOO 60-69 years, female 237.7
GTEX-ZEX8-2226-SM-57WC6 50-59 years, male 237.2
GTEX-13D11-1026-SM-5IJFB 50-59 years, female 236.0
GTEX-ZAB4-2526-SM-5HL8M 40-49 years, male 234.9
GTEX-ZZ64-1226-SM-5E43R 20-29 years, male 234.6
GTEX-RU72-0626-SM-46MUI 50-59 years, female 234.5
GTEX-WI4N-1426-SM-3LK7H 40-49 years, female 234.1
GTEX-UPK5-2326-SM-3P5Z8 40-49 years, male 234.0
GTEX-13FTW-1426-SM-5LZWZ 40-49 years, male 233.9
GTEX-XQ3S-1326-SM-4BOPQ 20-29 years, male 232.8
GTEX-WYVS-1726-SM-3NMAY 40-49 years, female 229.3
GTEX-YEC3-1026-SM-5IFI5 50-59 years, male 229.1
GTEX-PSDG-1626-SM-48TCQ 50-59 years, male 228.9
GTEX-145MO-0826-SM-5NQBL 60-69 years, male 228.1
GTEX-139T6-1626-SM-5PNYZ 50-59 years, male 226.9
GTEX-ZVT2-1826-SM-5NQ8W 50-59 years, female 226.9
GTEX-WRHU-0326-SM-3MJFY 50-59 years, female 225.9
GTEX-WYJK-1326-SM-3NB2T 50-59 years, male 225.3
GTEX-11EI6-0626-SM-5985T 60-69 years, male 224.8
GTEX-U3ZN-1926-SM-4DXSG 30-39 years, female 224.0
GTEX-UJHI-1426-SM-3DB9C 50-59 years, female 222.8
GTEX-ZV7C-1826-SM-5NQ83 50-59 years, male 222.5
GTEX-Y8LW-1626-SM-5IFHX 50-59 years, female 222.3
GTEX-ZY6K-1626-SM-5GZWV 50-59 years, male 220.6
GTEX-13CF3-2126-SM-5IFJP 60-69 years, female 219.5
GTEX-XMK1-1126-SM-4IHJ8 40-49 years, male 219.5
GTEX-ZYW4-0826-SM-5GIDG 60-69 years, male 219.1
GTEX-T6MO-0326-SM-32QOK 40-49 years, female 219.0
GTEX-13OW5-2226-SM-5L3HC 60-69 years, male 217.7
GTEX-YFCO-1826-SM-4W1YH 40-49 years, male 217.1
GTEX-ZVTK-0326-SM-51MRR 20-29 years, male 217.1
GTEX-X261-0626-SM-3NMD9 50-59 years, male 216.6
GTEX-132NY-0826-SM-5K7Y7 60-69 years, male 216.0
GTEX-UTHO-1026-SM-3GAF7 60-69 years, male 216.0
GTEX-11TUW-1826-SM-5BC5D 60-69 years, male 215.4
GTEX-RUSQ-2026-SM-4GIAK 50-59 years, male 215.2
GTEX-1399U-1826-SM-5PNZ1 50-59 years, female 215.1
GTEX-11ZUS-0826-SM-5FQUY 30-39 years, male 214.9
GTEX-11WQK-2426-SM-5GU5C 50-59 years, male 214.8
GTEX-11DXW-0626-SM-5N9ER 40-49 years, male 214.5
GTEX-XMD2-0926-SM-4WWEF 60-69 years, female 211.1
GTEX-Y5V6-2126-SM-4WWFX 60-69 years, male 210.4
GTEX-11PRG-0826-SM-5EQ6A 50-59 years, male 210.0
GTEX-U8XE-0826-SM-4E3J1 30-39 years, male 209.6
GTEX-S341-1526-SM-4AD6K 40-49 years, female 209.4
GTEX-12KS4-0126-SM-5Q5A5 30-39 years, male 209.0
GTEX-ZV6S-1826-SM-5NQ8D 40-49 years, female 207.3
GTEX-U3ZH-1426-SM-4DXSR 30-39 years, male 206.6
GTEX-ZYT6-0126-SM-5E45J 30-39 years, male 205.5
GTEX-11GS4-2126-SM-5A5KR 60-69 years, male 204.6
GTEX-T6MN-0726-SM-32PML 50-59 years, male 203.9
GTEX-RWS6-1926-SM-47JXY 60-69 years, female 203.1
GTEX-145LT-0726-SM-5S2VM 40-49 years, male 203.0
GTEX-T5JC-2126-SM-32PMO 20-29 years, male 202.0
GTEX-145ME-1526-SM-5Q5F2 40-49 years, female 201.6
GTEX-11P81-1926-SM-5BC53 30-39 years, female 201.3
GTEX-X15G-1626-SM-3NMB3 50-59 years, female 201.2
GTEX-13O61-1826-SM-5KM4I 60-69 years, male 200.7
GTEX-11ZTT-2326-SM-5EQLG 60-69 years, female 200.6
GTEX-YB5K-1626-SM-5IFIN 40-49 years, female 200.6
GTEX-TMMY-0726-SM-33HBE 40-49 years, female 198.8
GTEX-Y9LG-1426-SM-5IFJZ 30-39 years, male 198.8
GTEX-13N1W-0626-SM-5MR4U 70-79 years, male 198.6
GTEX-11EM3-1326-SM-5N9C6 20-29 years, female 198.1
GTEX-11NSD-0926-SM-5N9DR 20-29 years, male 198.1
GTEX-13O3P-0826-SM-5L3DH 50-59 years, male 198.0
GTEX-ZYWO-2326-SM-5GZY4 40-49 years, female 197.4
GTEX-1269C-2426-SM-5FQSN 60-69 years, female 197.3
GTEX-13FHO-0826-SM-5L3E8 60-69 years, male 197.0
GTEX-T2IS-1526-SM-32QPR 20-29 years, female 196.5
GTEX-WXYG-2226-SM-4E3IM 50-59 years, female 195.8
GTEX-131YS-0626-SM-5EGKL 60-69 years, female 195.7
GTEX-S4UY-0726-SM-4AD6X 40-49 years, female 195.5
GTEX-REY6-2426-SM-48FF5 60-69 years, male 194.0
GTEX-Y114-2026-SM-4TT7L 50-59 years, female 193.6
GTEX-XOT4-0726-SM-4GIAW 60-69 years, female 193.4
GTEX-ZDTT-2126-SM-5S2OJ 60-69 years, male 191.4
GTEX-13W46-0826-SM-5LU3H 50-59 years, male 191.1
GTEX-TKQ1-0226-SM-33HB5 30-39 years, male 191.0
GTEX-ZU9S-1926-SM-5NQBP 30-39 years, male 190.7
GTEX-13W3W-1226-SM-5LU4H 60-69 years, female 190.2
GTEX-11GSO-1926-SM-5A5K3 60-69 years, male 190.0
GTEX-Y8E4-1626-SM-5S2MW 40-49 years, male 190.0
GTEX-XGQ4-0926-SM-4AT4U 50-59 years, male 187.8
GTEX-13PVQ-1026-SM-5KM3M 50-59 years, male 187.0
GTEX-14AS3-1626-SM-5S2OY 40-49 years, female 185.4
GTEX-ZYFC-0826-SM-5E44K 50-59 years, male 185.3
GTEX-WOFL-0826-SM-3MJG1 60-69 years, male 185.2
GTEX-ZDYS-1126-SM-5K7UB 50-59 years, male 184.9
GTEX-ZPIC-1126-SM-5BC7F 40-49 years, female 184.4
GTEX-R53T-1526-SM-48FEK 50-59 years, female 182.5
GTEX-ZC5H-2626-SM-5J2MG 40-49 years, female 182.4
GTEX-1211K-1926-SM-5EQLB 60-69 years, female 181.9
GTEX-S4P3-1326-SM-4AD6V 50-59 years, female 181.8
GTEX-117YX-1426-SM-5H12H 50-59 years, male 178.8
GTEX-ZT9W-2026-SM-51MRA 50-59 years, male 178.7
GTEX-ZTX8-1226-SM-4YCE9 20-29 years, male 178.0
GTEX-13FTX-1126-SM-5N9EN 20-29 years, female 177.0
GTEX-ZF3C-2326-SM-5S2MZ 50-59 years, female 176.3
GTEX-11WQC-1726-SM-5GU4W 60-69 years, male 175.4
GTEX-13QIC-2326-SM-5LU5N 60-69 years, female 175.2
GTEX-TML8-1226-SM-32QON 40-49 years, female 175.1
GTEX-QVJO-1826-SM-447C9 60-69 years, female 174.7
GTEX-Y5V5-2126-SM-4WWFO 60-69 years, female 174.4
GTEX-12ZZX-1126-SM-5EGKB 40-49 years, female 174.2
GTEX-13CF2-2026-SM-5K7VI 60-69 years, male 173.8
GTEX-R55F-1726-SM-2TF4R 50-59 years, male 172.8
GTEX-ZQG8-0726-SM-5P9H9 60-69 years, female 172.5
GTEX-11O72-2126-SM-5N9FO 40-49 years, male 172.1
GTEX-1122O-1226-SM-5H113 60-69 years, female 172.0
GTEX-ZVT4-1026-SM-57WC4 50-59 years, female 171.8
GTEX-145MN-1926-SM-5SIAI 30-39 years, male 170.2
GTEX-14E6E-1326-SM-5S2NR 30-39 years, male 169.6
GTEX-11P82-1326-SM-5HL62 20-29 years, male 168.9
GTEX-131XW-0726-SM-5EGK3 50-59 years, female 168.0
GTEX-X4EP-2926-SM-3P5YQ 60-69 years, female 167.5
GTEX-ZF2S-2026-SM-5E461 50-59 years, female 165.8
GTEX-144GL-2026-SM-5LU3O 50-59 years, male 164.0
GTEX-ZLFU-2126-SM-4WWEV 40-49 years, male 163.8
GTEX-Y111-2026-SM-4SOJA 50-59 years, male 163.5
GTEX-144GM-0926-SM-5O994 20-29 years, male 163.1
GTEX-11TT1-2126-SM-5GU5Y 20-29 years, male 161.1
GTEX-ZZPU-0626-SM-5E43T 50-59 years, female 160.3
GTEX-ZF29-1926-SM-5S2P1 60-69 years, female 159.4
GTEX-12WSM-1726-SM-5BC6J 60-69 years, male 159.2
GTEX-QMRM-1626-SM-4R1KV 50-59 years, male 159.2
GTEX-11NV4-2026-SM-5N9DG 60-69 years, male 156.9
GTEX-S7SE-0826-SM-4AT4D 50-59 years, male 156.3
GTEX-XYKS-1326-SM-4BRUN 60-69 years, female 155.9
GTEX-Y3I4-1526-SM-4TT7K 50-59 years, male 154.1
GTEX-1314G-1226-SM-5BC6D 30-39 years, male 151.8
GTEX-11DXZ-1926-SM-5GZZL 50-59 years, male 150.9
GTEX-12BJ1-1826-SM-5HL9N 60-69 years, male 149.7
GTEX-ZQUD-1926-SM-51MSA 30-39 years, male 149.5
GTEX-WFON-1826-SM-3GILG 40-49 years, male 149.4
GTEX-12WSB-0626-SM-59HJO 60-69 years, female 148.8
GTEX-TKQ2-1826-SM-33HB2 50-59 years, male 148.6
GTEX-ZVZQ-0826-SM-51MRF 60-69 years, female 148.4
GTEX-1313W-0826-SM-5EQ4T 50-59 years, female 148.2
GTEX-ZUA1-1526-SM-59HLS 40-49 years, male 147.5
GTEX-117XS-1926-SM-5GICO 60-69 years, male 147.3
GTEX-ZDXO-0126-SM-5S2ND 60-69 years, male 145.9
GTEX-XBED-1626-SM-47JYN 60-69 years, male 145.0
GTEX-YJ8O-2226-SM-5IFHW 40-49 years, female 143.3
GTEX-X4XY-0926-SM-4E3JD 60-69 years, male 141.1
GTEX-ZA64-1526-SM-5CVMD 20-29 years, male 141.0
GTEX-14753-2426-SM-5LU8U 60-69 years, male 127.2
GTEX-11DXY-2326-SM-5GICW 60-69 years, male 125.9
GTEX-147F4-2826-SM-5NQBN 50-59 years, male 122.8
GTEX-11P7K-0726-SM-5EGKX 30-39 years, male 122.5
GTEX-13OW8-0226-SM-5K7UP 60-69 years, male 116.8
GTEX-11OF3-1926-SM-59889 60-69 years, male 116.7
GTEX-12WSK-2226-SM-5GCO5 40-49 years, female 107.3
GTEX-W5X1-2326-SM-3GIL6 40-49 years, female 101.4
Show all

BREAST - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

97.2

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 97.2
FF:10080-102A8 77 years, female 97.2

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