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TISSUE ATLAS PRIMARY DATA HIPPOCAMPUS

GENE/PROTEIN

Antibody validation


Dictionary

Hippocampus

HIPPOCAMPUS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:66.0RPKM
FANTOM5:118.3Tags Per Million

HIPPOCAMPUS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glial cells:Low
Neuronal cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA019006

 

Antibody HPA020595

 

Glial cells

Low   Not detected  

Neuronal cells

Not detected   High  
   
   
   

HIPPOCAMPUS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

66.0

GTEx sample id

Sample description

RPKM

Brain - Hippocampus
RPKM: 66.0
Samples: 94

Max RPKM: 130.5
Min RPKM: 21.4
Std RPKM: 20.7
Median RPKM: 65.7
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 130.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 116.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 114.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 112.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 107.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 99.9
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 97.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 95.5
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 92.6
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 92.3
GTEX-N7MT-0011-R1a-SM-5SI7S 60-69 years, female 89.5
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 85.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 83.9
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 83.8
GTEX-XOTO-0011-R1B-SM-4B65C 50-59 years, male 82.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 82.1
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 81.9
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 81.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 80.3
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 79.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 79.1
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 78.3
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 78.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 77.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 76.8
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 76.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 76.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 76.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 75.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 74.7
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 74.2
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 73.6
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 73.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 72.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 71.9
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 71.9
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 71.5
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 71.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 69.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 69.4
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 69.0
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 67.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 67.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 67.1
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 66.1
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 66.0
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 65.9
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 65.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 65.2
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 64.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 64.4
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 64.3
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 64.3
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 64.1
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 63.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 61.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 61.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 60.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 60.2
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 60.1
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 58.9
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 58.7
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 56.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 55.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 55.2
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 55.0
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 54.7
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 54.6
GTEX-RNOR-0011-R1A-SM-5SI8F 50-59 years, female 52.9
GTEX-12WSB-0011-R1b-SM-5P9EY 60-69 years, female 52.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 51.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 51.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 51.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 51.0
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 50.5
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 47.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 47.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 46.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 46.0
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 44.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 42.9
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 42.7
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 42.2
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 39.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 38.7
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 38.5
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 37.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 35.3
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 34.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 32.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 28.8
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 28.4
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 27.0
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 21.4
Show all

HIPPOCAMPUS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

118.3

FANTOM5 sample id

Sample description

Tags Per Million

Hippocampus
Tags Per Million: 127.9
FF:10153-102I9 76 years, female 161.2
FF:10169-103B7 60 years, female 94.6

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