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TISSUE ATLAS PRIMARY DATA SPLEEN

GENE/PROTEIN

Antibody validation


Dictionary

Spleen

Tissue proteome

Spleen

SPLEEN - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:86.2TPM
GTEx:210.7RPKM
FANTOM5:76.4Tags Per Million

SPLEEN - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in red pulp:Low
Cells in white pulp:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA019006

 

Antibody HPA020595

 

Cells in red pulp

Medium   Not detected  

Cells in white pulp

Not detected   Not detected  
   
   
   

SPLEEN - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

86.2

overview Female, age 60 Sample 1
TPM: 84.1
Cell types%
Lymphocytes: 40
Macrophages: 30
Endothelial cells: 15
Fibroblasts: 5
Other cell types: 10
overview Male, age 17 Sample 2
TPM: 74.5
Cell types%
Lymphocytes: 40
Macrophages: 35
Endothelial cells: 15
Fibroblasts: 5
Other cell types: 5
overview Male, age 20 Sample 3
TPM: 91.4
Cell types%
Lymphocytes: 40
Macrophages: 30
Endothelial cells: 15
Fibroblasts: 5
Other cell types: 10
overview Female, age 19 Sample 4
TPM: 91.2
Cell types%
Lymphocytes: 40
Macrophages: 30
Endothelial cells: 15
Fibroblasts: 10
Other cell types: 5
overview Female, age 65 Sample 5
TPM: 89.9
Cell types%
Lymphocytes: 35
Macrophages: 30
Endothelial cells: 20
Fibroblasts: 10
Other cell types: 5

SPLEEN - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

210.7

GTEx sample id

Sample description

RPKM

Spleen
RPKM: 210.7
Samples: 104

Max RPKM: 349.0
Min RPKM: 88.1
Std RPKM: 53.9
Median RPKM: 201.2
GTEX-UPK5-1626-SM-4JBHI 40-49 years, male 349.0
GTEX-XUJ4-0226-SM-4BOP8 60-69 years, female 345.4
GTEX-P4QS-0926-SM-48TBS 60-69 years, male 331.4
GTEX-O5YT-0926-SM-48TDG 20-29 years, male 327.8
GTEX-X585-1826-SM-4QAS3 50-59 years, male 324.3
GTEX-12WSG-0926-SM-5EGIH 50-59 years, female 302.8
GTEX-12WSJ-0526-SM-5GCOZ 40-49 years, female 297.7
GTEX-131XG-0426-SM-5IFGD 50-59 years, female 295.8
GTEX-13S86-0126-SM-5S2PI 40-49 years, male 292.6
GTEX-Q734-0226-SM-48U1A 40-49 years, female 287.6
GTEX-Z9EW-0726-SM-5HL9H 40-49 years, male 284.8
GTEX-XV7Q-0126-SM-4BRVK 40-49 years, female 279.1
GTEX-QV44-0126-SM-4R1KH 50-59 years, male 275.8
GTEX-11LCK-0126-SM-5A5M5 30-39 years, male 274.8
GTEX-XQ8I-1726-SM-4BOQB 50-59 years, male 273.5
GTEX-RUSQ-0126-SM-47JWV 50-59 years, male 272.0
GTEX-Y3IK-0126-SM-4WWE9 50-59 years, female 266.2
GTEX-132QS-0226-SM-5IFFZ 60-69 years, male 260.7
GTEX-XXEK-0126-SM-4BRVU 50-59 years, male 258.9
GTEX-U4B1-0526-SM-4DXTK 40-49 years, male 258.6
GTEX-YB5E-0426-SM-5IFHR 40-49 years, male 256.5
GTEX-139YR-0426-SM-5IFFV 50-59 years, male 254.8
GTEX-OOBJ-0926-SM-48TDO 60-69 years, male 254.0
GTEX-S3XE-0626-SM-4AD6B 50-59 years, male 253.3
GTEX-PW2O-0126-SM-48TC8 20-29 years, male 247.0
GTEX-ZV6S-0826-SM-5NQ6Z 40-49 years, female 244.9
GTEX-Y5LM-0326-SM-4VBRN 40-49 years, female 242.7
GTEX-ZPU1-1026-SM-4YCEQ 40-49 years, male 242.2
GTEX-ZLFU-0526-SM-4WWBN 40-49 years, male 240.7
GTEX-13U4I-1626-SM-5IFFR 40-49 years, female 238.8
GTEX-12WSN-0126-SM-5DUX5 40-49 years, male 236.5
GTEX-ZVP2-0526-SM-51MSC 50-59 years, male 235.8
GTEX-11NSD-0426-SM-5N9CR 20-29 years, male 233.5
GTEX-146FQ-0626-SM-5LU9U 30-39 years, male 232.8
GTEX-OIZH-0926-SM-48TBR 50-59 years, male 232.7
GTEX-UJHI-0126-SM-4IHLP 50-59 years, female 232.7
GTEX-X4LF-0226-SM-4QAS8 50-59 years, male 231.0
GTEX-WHWD-0126-SM-4OORS 50-59 years, male 230.7
GTEX-13VXT-1326-SM-5LU3Y 20-29 years, female 230.1
GTEX-QDVN-0526-SM-48TZ4 50-59 years, male 229.4
GTEX-131XE-1126-SM-5EGHW 50-59 years, male 228.3
GTEX-12WSK-0126-SM-5GCO7 40-49 years, female 227.9
GTEX-1399R-0226-SM-5IJGG 30-39 years, male 214.2
GTEX-XGQ4-0126-SM-4AT4H 50-59 years, male 214.2
GTEX-ZLWG-0426-SM-4WWFA 50-59 years, female 214.2
GTEX-PX3G-0926-SM-48U12 20-29 years, female 208.7
GTEX-13N11-0126-SM-5KM2Z 50-59 years, female 208.6
GTEX-13CF3-0226-SM-5J1NW 60-69 years, female 208.2
GTEX-Y3I4-0126-SM-4TT26 50-59 years, male 207.7
GTEX-ZVZP-0726-SM-59HKA 50-59 years, male 207.2
GTEX-Q2AH-0226-SM-48U1I 40-49 years, male 201.9
GTEX-1399S-0226-SM-5IFFG 30-39 years, female 201.4
GTEX-147F3-0126-SM-5NQBJ 50-59 years, female 201.1
GTEX-ZDTT-1026-SM-5KM19 60-69 years, male 201.1
GTEX-U3ZH-0126-SM-4DXUK 30-39 years, male 200.9
GTEX-11EQ9-0426-SM-5A5JY 30-39 years, male 199.6
GTEX-1122O-0526-SM-5N9DM 60-69 years, female 199.5
GTEX-WFON-0126-SM-4LVM9 40-49 years, male 198.9
GTEX-T5JW-0126-SM-4DM6K 20-29 years, female 197.6
GTEX-PLZ6-0126-SM-48TC6 30-39 years, male 197.2
GTEX-YFCO-0926-SM-5LUA5 40-49 years, male 196.5
GTEX-QV31-0126-SM-447BP 30-39 years, male 194.0
GTEX-ZYFG-0726-SM-5GIDX 60-69 years, female 192.6
GTEX-U3ZN-0126-SM-4DXUM 30-39 years, female 189.6
GTEX-XPVG-0626-SM-4B65B 50-59 years, male 188.9
GTEX-14E6E-1226-SM-5S2R5 30-39 years, male 187.5
GTEX-1211K-0426-SM-5FQTP 60-69 years, female 187.3
GTEX-XAJ8-0126-SM-47JYG 40-49 years, male 182.9
GTEX-139T6-0226-SM-5IFGZ 50-59 years, male 182.0
GTEX-13PL7-1126-SM-5MR5O 60-69 years, female 180.7
GTEX-S4Z8-0226-SM-4AD5K 60-69 years, male 178.3
GTEX-X3Y1-0126-SM-4PQZA 40-49 years, male 178.3
GTEX-13X6H-0726-SM-5Q5BX 50-59 years, female 178.1
GTEX-R55G-0226-SM-48FEI 40-49 years, female 177.6
GTEX-POMQ-0126-SM-48TD6 20-29 years, female 177.3
GTEX-YB5K-1926-SM-4VDT4 40-49 years, female 177.3
GTEX-144GN-2126-SM-5O99D 50-59 years, male 177.1
GTEX-117YX-2126-SM-5GIEL 50-59 years, male 176.8
GTEX-ZAB5-0526-SM-5CVMU 50-59 years, male 174.6
GTEX-P4PP-0926-SM-48TBZ 30-39 years, female 171.6
GTEX-ZYWO-0226-SM-5GZX3 40-49 years, female 167.2
GTEX-11DXX-0726-SM-5H12X 60-69 years, female 167.0
GTEX-12BJ1-0726-SM-5EGGF 60-69 years, male 166.3
GTEX-Y8LW-0126-SM-4VBS1 50-59 years, female 166.0
GTEX-XMK1-0126-SM-4B65F 40-49 years, male 162.0
GTEX-13111-0126-SM-5EGHO 50-59 years, male 160.1
GTEX-ZZPU-0126-SM-5E446 50-59 years, female 155.0
GTEX-VJYA-0126-SM-4KL1P 60-69 years, male 154.5
GTEX-11VI4-0126-SM-5GU6Z 40-49 years, female 154.2
GTEX-YEC4-0126-SM-4W21T 40-49 years, male 150.1
GTEX-14DAR-0326-SM-5S2PS 50-59 years, male 149.3
GTEX-QMRM-0226-SM-4R1K7 50-59 years, male 149.3
GTEX-ZP4G-0326-SM-4YCEF 20-29 years, female 149.3
GTEX-QLQW-0126-SM-447BK 30-39 years, male 145.7
GTEX-11P81-1326-SM-5GU5S 30-39 years, female 143.9
GTEX-W5WG-0626-SM-4SOID 50-59 years, female 142.9
GTEX-13FH7-1326-SM-5IFG8 50-59 years, female 137.5
GTEX-146FR-1926-SM-5NQA6 60-69 years, female 137.4
GTEX-Y114-0726-SM-4TT6U 50-59 years, female 134.6
GTEX-145MN-0126-SM-5RQHY 30-39 years, male 132.9
GTEX-13PVR-0326-SM-5RQJY 60-69 years, female 131.0
GTEX-QCQG-0226-SM-48U28 50-59 years, female 117.3
GTEX-11P7K-0426-SM-5BC5H 30-39 years, male 106.7
GTEX-11XUK-0426-SM-5EQML 40-49 years, female 88.1
Show all

SPLEEN - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

76.4

FANTOM5 sample id

Sample description

Tags Per Million

Spleen
Tags Per Million: 76.4
FF:10025-101D7 39,50,70 years, male 76.4

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