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TISSUE ATLAS PRIMARY DATA BREAST

GENE/PROTEIN

Antibody validation


Dictionary

Breast

BREAST - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:15.2TPM
GTEx:77.5RPKM
FANTOM5:300.5Tags Per Million

BREAST - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Adipocytes:Medium
Glandular cells:Not detected
Myoepithelial cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA006554

 

Adipocytes

Medium  

Glandular cells

Not detected  

Myoepithelial cells

Not detected  
 
 

BREAST - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

15.2

overview Female, age 52 Sample 1
TPM: 15.4
Cell types%
Glandular cells: 15
Adipocytes: 5
Other cell types: 80
overview Female, age 80 Sample 2
TPM: 24
Cell types%
Glandular cells: 5
Adipocytes: 15
Other cell types: 80
overview Female, age 47 Sample 3
TPM: 5.6
Cell types%
Glandular cells: 5
Adipocytes: 5
Other cell types: 90
overview Female, age 38 Sample 4
TPM: 15.8
Cell types%
Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

77.5

GTEx sample id

Sample description

RPKM

Breast - Mammary Tissue
RPKM: 77.5
Samples: 214

Max RPKM: 368.1
Min RPKM: 2.6
Std RPKM: 75.8
Median RPKM: 48.1
GTEX-11P82-1326-SM-5HL62 20-29 years, male 368.1
GTEX-YB5E-1726-SM-5IFJ3 40-49 years, male 325.3
GTEX-ZQG8-0726-SM-5P9H9 60-69 years, female 305.7
GTEX-13O61-1826-SM-5KM4I 60-69 years, male 288.1
GTEX-ZT9W-2026-SM-51MRA 50-59 years, male 270.2
GTEX-R55D-0826-SM-48FEA 50-59 years, male 265.5
GTEX-YB5K-1626-SM-5IFIN 40-49 years, female 264.0
GTEX-117YX-1426-SM-5H12H 50-59 years, male 253.5
GTEX-ZZ64-1226-SM-5E43R 20-29 years, male 252.5
GTEX-YEC3-1026-SM-5IFI5 50-59 years, male 251.2
GTEX-145ME-1526-SM-5Q5F2 40-49 years, female 251.1
GTEX-12BJ1-1826-SM-5HL9N 60-69 years, male 249.2
GTEX-ZDYS-1126-SM-5K7UB 50-59 years, male 245.1
GTEX-11ZTT-2326-SM-5EQLG 60-69 years, female 243.3
GTEX-13FTX-1126-SM-5N9EN 20-29 years, female 238.2
GTEX-Y9LG-1426-SM-5IFJZ 30-39 years, male 233.6
GTEX-XGQ4-0926-SM-4AT4U 50-59 years, male 224.6
GTEX-REY6-2426-SM-48FF5 60-69 years, male 214.9
GTEX-139T6-1626-SM-5PNYZ 50-59 years, male 208.9
GTEX-S4Q7-1126-SM-4AD6R 20-29 years, male 208.2
GTEX-12KS4-0126-SM-5Q5A5 30-39 years, male 204.4
GTEX-ZQUD-1926-SM-51MSA 30-39 years, male 201.0
GTEX-13CF3-2126-SM-5IFJP 60-69 years, female 195.7
GTEX-XQ8I-2426-SM-4WAXY 50-59 years, male 192.7
GTEX-WY7C-2726-SM-3NB3P 50-59 years, male 190.0
GTEX-QMRM-1626-SM-4R1KV 50-59 years, male 189.6
GTEX-T6MO-0326-SM-32QOK 40-49 years, female 188.2
GTEX-YFCO-1826-SM-4W1YH 40-49 years, male 179.4
GTEX-PSDG-1626-SM-48TCQ 50-59 years, male 173.4
GTEX-ZA64-1526-SM-5CVMD 20-29 years, male 171.1
GTEX-Y5V6-2126-SM-4WWFX 60-69 years, male 157.1
GTEX-ZDTT-2126-SM-5S2OJ 60-69 years, male 153.5
GTEX-13FTW-1426-SM-5LZWZ 40-49 years, male 146.0
GTEX-ZDXO-0126-SM-5S2ND 60-69 years, male 145.7
GTEX-11I78-2226-SM-5PNYA 50-59 years, female 143.3
GTEX-14E6E-1326-SM-5S2NR 30-39 years, male 142.7
GTEX-13N1W-0626-SM-5MR4U 70-79 years, male 142.5
GTEX-11EQ9-1826-SM-5Q5AJ 30-39 years, male 140.6
GTEX-145MO-0826-SM-5NQBL 60-69 years, male 134.2
GTEX-145MN-1926-SM-5SIAI 30-39 years, male 130.3
GTEX-11GSO-1926-SM-5A5K3 60-69 years, male 128.8
GTEX-ZPIC-1126-SM-5BC7F 40-49 years, female 128.0
GTEX-XV7Q-2326-SM-4BRVZ 40-49 years, female 127.2
GTEX-1211K-1926-SM-5EQLB 60-69 years, female 124.6
GTEX-WFON-1826-SM-3GILG 40-49 years, male 120.9
GTEX-133LE-1726-SM-5K7VQ 20-29 years, female 120.6
GTEX-11DXZ-1926-SM-5GZZL 50-59 years, male 120.0
GTEX-RUSQ-2026-SM-4GIAK 50-59 years, male 117.2
GTEX-Y114-2026-SM-4TT7L 50-59 years, female 117.2
GTEX-11LCK-2426-SM-5HL5F 30-39 years, male 115.8
GTEX-12WSM-1726-SM-5BC6J 60-69 years, male 115.6
GTEX-UTHO-1026-SM-3GAF7 60-69 years, male 112.6
GTEX-ZV6S-1826-SM-5NQ8D 40-49 years, female 112.4
GTEX-SE5C-2126-SM-4BRUJ 40-49 years, female 110.1
GTEX-S32W-2026-SM-4AD6E 50-59 years, female 109.2
GTEX-ZLFU-2126-SM-4WWEV 40-49 years, male 106.7
GTEX-12WSN-1326-SM-5GCNT 40-49 years, male 106.1
GTEX-117XS-1926-SM-5GICO 60-69 years, male 105.3
GTEX-TKQ1-0226-SM-33HB5 30-39 years, male 103.7
GTEX-XUW1-2326-SM-4BOO5 50-59 years, female 101.9
GTEX-11ONC-2126-SM-5HL6E 60-69 years, male 101.3
GTEX-XMK1-1126-SM-4IHJ8 40-49 years, male 99.3
GTEX-1399U-1826-SM-5PNZ1 50-59 years, female 97.2
GTEX-U412-1826-SM-4DXTJ 60-69 years, male 92.6
GTEX-ZAB4-2526-SM-5HL8M 40-49 years, male 91.5
GTEX-11ZUS-0826-SM-5FQUY 30-39 years, male 89.0
GTEX-139TU-0626-SM-5KM3X 60-69 years, male 88.2
GTEX-S4UY-0726-SM-4AD6X 40-49 years, female 87.3
GTEX-T5JW-2026-SM-4DM63 20-29 years, female 87.1
GTEX-X4XY-0926-SM-4E3JD 60-69 years, male 87.1
GTEX-ZYT6-0126-SM-5E45J 30-39 years, male 84.9
GTEX-ZVT4-1026-SM-57WC4 50-59 years, female 84.8
GTEX-XQ3S-1326-SM-4BOPQ 20-29 years, male 84.5
GTEX-R53T-1526-SM-48FEK 50-59 years, female 84.4
GTEX-ZYW4-0826-SM-5GIDG 60-69 years, male 84.4
GTEX-ZYWO-2326-SM-5GZY4 40-49 years, female 82.7
GTEX-13113-1726-SM-5GCOO 60-69 years, female 80.9
GTEX-13PVQ-1026-SM-5KM3M 50-59 years, male 79.5
GTEX-ZWKS-2826-SM-5NQ74 30-39 years, male 79.4
GTEX-Y8LW-1626-SM-5IFHX 50-59 years, female 79.1
GTEX-11DZ1-0326-SM-5N9BN 50-59 years, male 78.4
GTEX-1122O-1226-SM-5H113 60-69 years, female 76.4
GTEX-144GM-0926-SM-5O994 20-29 years, male 73.2
GTEX-Y3I4-1526-SM-4TT7K 50-59 years, male 72.9
GTEX-WXYG-2226-SM-4E3IM 50-59 years, female 72.5
GTEX-11O72-2126-SM-5N9FO 40-49 years, male 70.9
GTEX-Y8E4-1626-SM-5S2MW 40-49 years, male 69.9
GTEX-ZLV1-1426-SM-4WWES 60-69 years, female 69.4
GTEX-132Q8-1426-SM-5EGK7 60-69 years, male 67.4
GTEX-13W3W-1226-SM-5LU4H 60-69 years, female 67.1
GTEX-11NSD-0926-SM-5N9DR 20-29 years, male 63.6
GTEX-XUJ4-1926-SM-4BOOV 60-69 years, female 62.2
GTEX-132NY-0826-SM-5K7Y7 60-69 years, male 61.6
GTEX-1192X-2326-SM-5987X 50-59 years, male 61.5
GTEX-13N11-1726-SM-5J1OJ 50-59 years, female 57.1
GTEX-QVJO-1826-SM-447C9 60-69 years, female 56.8
GTEX-12WSB-0626-SM-59HJO 60-69 years, female 55.9
GTEX-132AR-0826-SM-5EGK6 50-59 years, female 55.6
GTEX-14753-2426-SM-5LU8U 60-69 years, male 55.4
GTEX-U3ZN-1926-SM-4DXSG 30-39 years, female 55.3
GTEX-ZUA1-1526-SM-59HLS 40-49 years, male 52.9
GTEX-ZV7C-1826-SM-5NQ83 50-59 years, male 52.4
GTEX-11DXY-2326-SM-5GICW 60-69 years, male 51.7
GTEX-QEL4-2126-SM-447AE 50-59 years, male 50.9
GTEX-UJHI-1426-SM-3DB9C 50-59 years, female 50.1
GTEX-TML8-1226-SM-32QON 40-49 years, female 48.4
GTEX-1117F-2826-SM-5GZXL 60-69 years, female 48.2
GTEX-11TUW-1826-SM-5BC5D 60-69 years, male 48.0
GTEX-13OW8-0226-SM-5K7UP 60-69 years, male 47.3
GTEX-11P81-1926-SM-5BC53 30-39 years, female 46.6
GTEX-T2YK-2226-SM-32QPT 50-59 years, male 45.9
GTEX-XBED-1626-SM-47JYN 60-69 years, male 45.5
GTEX-X261-0626-SM-3NMD9 50-59 years, male 44.2
GTEX-Y5LM-1726-SM-4VDSX 40-49 years, female 43.8
GTEX-11NV4-2026-SM-5N9DG 60-69 years, male 42.8
GTEX-XYKS-1326-SM-4BRUN 60-69 years, female 41.8
GTEX-111YS-1926-SM-5GICC 60-69 years, male 41.7
GTEX-13D11-1026-SM-5IJFB 50-59 years, female 41.7
GTEX-ZYFC-0826-SM-5E44K 50-59 years, male 40.1
GTEX-WI4N-1426-SM-3LK7H 40-49 years, female 40.0
GTEX-Y3IK-2326-SM-4WWDT 50-59 years, female 39.8
GTEX-YJ8O-2226-SM-5IFHW 40-49 years, female 39.7
GTEX-XMD1-0826-SM-4AT52 60-69 years, male 39.4
GTEX-144GL-2026-SM-5LU3O 50-59 years, male 38.2
GTEX-RWS6-1926-SM-47JXY 60-69 years, female 35.9
GTEX-Y5V5-2126-SM-4WWFO 60-69 years, female 35.7
GTEX-TMMY-0726-SM-33HBE 40-49 years, female 35.4
GTEX-ZF3C-2326-SM-5S2MZ 50-59 years, female 35.1
GTEX-WRHU-0326-SM-3MJFY 50-59 years, female 34.2
GTEX-ZZPU-0626-SM-5E43T 50-59 years, female 33.3
GTEX-13NZ8-0126-SM-5IJCT 60-69 years, female 32.1
GTEX-ZF29-1926-SM-5S2P1 60-69 years, female 32.0
GTEX-12WSK-2226-SM-5GCO5 40-49 years, female 31.2
GTEX-WYJK-1326-SM-3NB2T 50-59 years, male 31.0
GTEX-TKQ2-1826-SM-33HB2 50-59 years, male 30.9
GTEX-1314G-1226-SM-5BC6D 30-39 years, male 30.0
GTEX-146FH-0826-SM-5SI8T 50-59 years, female 29.7
GTEX-S33H-0326-SM-4AD6N 30-39 years, male 29.1
GTEX-ZVE2-1226-SM-5NQ8R 50-59 years, male 29.1
GTEX-S7SE-0826-SM-4AT4D 50-59 years, male 28.1
GTEX-XUZC-1626-SM-4BRVP 30-39 years, female 27.9
GTEX-11DXW-0626-SM-5N9ER 40-49 years, male 27.7
GTEX-11OF3-1926-SM-59889 60-69 years, male 27.3
GTEX-13O3Q-2226-SM-5KM4O 50-59 years, male 27.1
GTEX-UPK5-2326-SM-3P5Z8 40-49 years, male 26.5
GTEX-WOFL-0826-SM-3MJG1 60-69 years, male 26.3
GTEX-X15G-1626-SM-3NMB3 50-59 years, female 24.7
GTEX-S4P3-1326-SM-4AD6V 50-59 years, female 24.6
GTEX-ZVTK-0326-SM-51MRR 20-29 years, male 24.6
GTEX-13W46-0826-SM-5LU3H 50-59 years, male 23.7
GTEX-QDT8-0626-SM-48TYW 30-39 years, female 23.7
GTEX-139T8-0826-SM-5L3DE 60-69 years, male 23.1
GTEX-ZTX8-1226-SM-4YCE9 20-29 years, male 22.8
GTEX-1269C-2426-SM-5FQSN 60-69 years, female 22.5
GTEX-XMD2-0926-SM-4WWEF 60-69 years, female 21.9
GTEX-11EMC-2026-SM-5A5JV 60-69 years, female 21.7
GTEX-13S86-1226-SM-5S2OA 40-49 years, male 21.0
GTEX-13CF2-2026-SM-5K7VI 60-69 years, male 20.3
GTEX-ZXES-0826-SM-5E43C 30-39 years, female 19.6
GTEX-U8XE-0826-SM-4E3J1 30-39 years, male 19.5
GTEX-RU72-0626-SM-46MUI 50-59 years, female 19.3
GTEX-ZY6K-1626-SM-5GZWV 50-59 years, male 19.2
GTEX-S341-1526-SM-4AD6K 40-49 years, female 18.8
GTEX-Y111-2026-SM-4SOJA 50-59 years, male 18.5
GTEX-147F4-2826-SM-5NQBN 50-59 years, male 18.3
GTEX-1313W-0826-SM-5EQ4T 50-59 years, female 17.9
GTEX-11EM3-1326-SM-5N9C6 20-29 years, female 17.8
GTEX-11EI6-0626-SM-5985T 60-69 years, male 17.6
GTEX-ZVZQ-0826-SM-51MRF 60-69 years, female 17.4
GTEX-11TT1-2126-SM-5GU5Y 20-29 years, male 17.2
GTEX-R55F-1726-SM-2TF4R 50-59 years, male 16.8
GTEX-13OW5-2226-SM-5L3HC 60-69 years, male 16.4
GTEX-SIU7-1626-SM-4BRUK 50-59 years, male 16.4
GTEX-ZEX8-2226-SM-57WC6 50-59 years, male 15.8
GTEX-11GS4-2126-SM-5A5KR 60-69 years, male 15.4
GTEX-11P7K-0726-SM-5EGKX 30-39 years, male 15.3
GTEX-13FHO-0826-SM-5L3E8 60-69 years, male 15.3
GTEX-13QIC-2326-SM-5LU5N 60-69 years, female 15.3
GTEX-T6MN-0726-SM-32PML 50-59 years, male 15.3
GTEX-ZVT2-1826-SM-5NQ8W 50-59 years, female 15.0
GTEX-WYBS-0926-SM-3NM94 60-69 years, female 14.1
GTEX-QEG5-0726-SM-4R1JQ 20-29 years, male 13.8
GTEX-ZU9S-1926-SM-5NQBP 30-39 years, male 13.7
GTEX-Q2AG-0326-SM-48U1O 40-49 years, female 13.6
GTEX-T5JC-2126-SM-32PMO 20-29 years, male 13.6
GTEX-VJWN-0726-SM-3GIJ8 50-59 years, female 13.6
GTEX-12ZZX-1126-SM-5EGKB 40-49 years, female 13.3
GTEX-ZAJG-0626-SM-5HL8X 50-59 years, female 13.0
GTEX-11PRG-0826-SM-5EQ6A 50-59 years, male 12.5
GTEX-145LT-0726-SM-5S2VM 40-49 years, male 12.0
GTEX-11WQK-2426-SM-5GU5C 50-59 years, male 11.6
GTEX-ZTTD-1026-SM-51MRD 50-59 years, male 11.6
GTEX-11WQC-1726-SM-5GU4W 60-69 years, male 11.5
GTEX-XOT4-0726-SM-4GIAW 60-69 years, female 11.3
GTEX-U3ZH-1426-SM-4DXSR 30-39 years, male 11.0
GTEX-131YS-0626-SM-5EGKL 60-69 years, female 10.9
GTEX-WYVS-1726-SM-3NMAY 40-49 years, female 10.8
GTEX-W5X1-2326-SM-3GIL6 40-49 years, female 10.6
GTEX-13NZB-2126-SM-5MR4Y 30-39 years, male 10.1
GTEX-13PL6-2926-SM-5L3I2 40-49 years, female 9.9
GTEX-YFC4-1426-SM-5IFJG 40-49 years, female 9.1
GTEX-X4EP-2926-SM-3P5YQ 60-69 years, female 8.8
GTEX-13O3O-0826-SM-5K7WE 60-69 years, female 8.6
GTEX-ZC5H-2626-SM-5J2MG 40-49 years, female 8.5
GTEX-13O3P-0826-SM-5L3DH 50-59 years, male 8.3
GTEX-R3RS-0626-SM-48FE1 40-49 years, female 8.3
GTEX-13FTY-2226-SM-5J1ND 40-49 years, female 8.2
GTEX-ZF2S-2026-SM-5E461 50-59 years, female 8.2
GTEX-14AS3-1626-SM-5S2OY 40-49 years, female 7.9
GTEX-T2IS-1526-SM-32QPR 20-29 years, female 7.8
GTEX-VUSG-2226-SM-4KKZO 50-59 years, male 6.1
GTEX-131XW-0726-SM-5EGK3 50-59 years, female 6.0
GTEX-13NZ9-1026-SM-5MR5K 50-59 years, male 4.2
GTEX-14ABY-2126-SM-5QGQZ 50-59 years, male 2.6
Show all

BREAST - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

300.5

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 300.5
FF:10080-102A8 77 years, female 300.5

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