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TISSUE ATLAS CEREBRAL CORTEX

GENE/PROTEIN

Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:14.3TPM
GTEx:3.6RPKM

CEREBRAL CORTEX - Annotated protein expression

Pending normal tissue analysis


CEREBRAL CORTEX - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

14.3

N/A Male, age 5 Sample 1
TPM: 9.7
overview Female, age 40 Sample 2
TPM: 15.4
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70 Sample 3
TPM: 17.7
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

3.6

GTEx sample id

Sample description

RPKM

Brain - Cortex
RPKM: 3.4
Samples: 114

Max RPKM: 8.1
Min RPKM: 1.8
Std RPKM: 0.8
Median RPKM: 3.3
GTEX-13G51-3026-SM-5IJB8 60-69 years, male 8.1
GTEX-UTHO-3026-SM-3GAFB 60-69 years, male 7.2
GTEX-NPJ8-1526-SM-2D7VU 40-49 years, male 5.3
GTEX-1192X-3126-SM-5N9BY 50-59 years, male 5.2
GTEX-N7MT-1126-SM-5SI7V 60-69 years, female 5.0
GTEX-12ZZY-3026-SM-5GCOU 60-69 years, male 4.7
GTEX-OXRN-2426-SM-2I5EQ 50-59 years, male 4.7
GTEX-PVOW-2526-SM-2XCF7 40-49 years, male 4.7
GTEX-QVUS-2826-SM-3GADB 60-69 years, female 4.7
GTEX-QMR6-1426-SM-32PLA 50-59 years, male 4.6
GTEX-111FC-3126-SM-5GZZ2 60-69 years, male 4.3
GTEX-13PVQ-3026-SM-5SI93 50-59 years, male 4.3
GTEX-WL46-2926-SM-3LK82 50-59 years, male 4.3
GTEX-11O72-2926-SM-5BC4V 40-49 years, male 4.2
GTEX-WHSE-3026-SM-3P5ZH 20-29 years, male 4.2
GTEX-13FHP-3026-SM-5IJBS 50-59 years, male 4.1
GTEX-NPJ7-2726-SM-2I3FT 60-69 years, female 4.1
GTEX-Q2AG-2926-SM-2HMJ3 40-49 years, female 4.1
GTEX-QDT8-2926-SM-32PKC 30-39 years, female 4.1
GTEX-T2IS-3026-SM-32QPM 20-29 years, female 4.1
GTEX-1313W-3126-SM-5LZUI 50-59 years, female 4.0
GTEX-RNOR-2326-SM-2TF4I 50-59 years, female 4.0
GTEX-X4XX-3026-SM-3NMB2 60-69 years, male 4.0
GTEX-ZAK1-3026-SM-5S2MJ 50-59 years, female 4.0
GTEX-13OW8-2826-SM-5L3GC 60-69 years, male 3.9
GTEX-PWO3-0926-SM-2I5EY 60-69 years, female 3.9
GTEX-T6MN-2626-SM-32PMQ 50-59 years, male 3.9
GTEX-12ZZZ-3026-SM-5BC67 60-69 years, male 3.8
GTEX-13FLW-1426-SM-5K7YE 50-59 years, male 3.8
GTEX-XLM4-3026-SM-4AT6L 60-69 years, male 3.8
GTEX-11GS4-3126-SM-5A5LH 60-69 years, male 3.7
GTEX-13OVH-3026-SM-5MR4N 70-79 years, male 3.7
GTEX-13OVJ-2826-SM-5L3GW 50-59 years, female 3.7
GTEX-11EI6-3026-SM-5GZZO 60-69 years, male 3.6
GTEX-13NYB-3026-SM-5IJD7 40-49 years, male 3.6
GTEX-QVJO-1426-SM-2S1QY 60-69 years, female 3.6
GTEX-YFC4-3126-SM-5PNV6 40-49 years, female 3.6
GTEX-11NUK-2926-SM-5A5MD 50-59 years, male 3.5
GTEX-11ZUS-2926-SM-5FQSL 30-39 years, male 3.5
GTEX-13IVO-2926-SM-5L3CZ 70-79 years, male 3.5
GTEX-145MH-3026-SM-5Q5DZ 50-59 years, male 3.5
GTEX-TSE9-3026-SM-3DB76 60-69 years, female 3.5
GTEX-WWYW-3126-SM-3NB39 50-59 years, female 3.5
GTEX-X585-3026-SM-46MWF 50-59 years, male 3.5
GTEX-11OF3-2926-SM-5HL78 60-69 years, male 3.4
GTEX-12ZZX-2926-SM-5GCOQ 40-49 years, female 3.4
GTEX-13FHO-3026-SM-5J1O9 60-69 years, male 3.4
GTEX-13X6J-3026-SM-5Q5CU 50-59 years, male 3.4
GTEX-XOTO-3026-SM-4B65M 50-59 years, male 3.4
GTEX-11DXY-3226-SM-5GIDE 60-69 years, male 3.3
GTEX-11WQK-3026-SM-5EQL6 50-59 years, male 3.3
GTEX-12WSA-2926-SM-5EQ4D 60-69 years, male 3.3
GTEX-13OW6-3026-SM-5J2MI 50-59 years, male 3.3
GTEX-13X6K-2926-SM-5Q5D5 60-69 years, female 3.3
GTEX-T5JC-2426-SM-3NMDB 20-29 years, male 3.3
GTEX-WVLH-3026-SM-3MJG9 50-59 years, male 3.3
GTEX-WZTO-2926-SM-3NM9I 40-49 years, male 3.3
GTEX-Y8DK-0826-SM-4TT3T 60-69 years, male 3.3
GTEX-12WSD-3126-SM-5HL7P 60-69 years, female 3.2
GTEX-14A5I-2926-SM-5Q5CQ 50-59 years, female 3.2
GTEX-14BMV-3026-SM-5S2PQ 50-59 years, male 3.2
GTEX-ZUA1-3026-SM-59HJC 40-49 years, male 3.2
GTEX-1128S-2726-SM-5H12C 60-69 years, female 3.1
GTEX-11ONC-2926-SM-5P9JM 60-69 years, male 3.1
GTEX-145LS-3126-SM-5Q5BY 60-69 years, female 3.1
GTEX-14ASI-3026-SM-5S2PN 60-69 years, male 3.1
GTEX-Z93S-2926-SM-57WB9 50-59 years, male 3.1
GTEX-ZYFD-3026-SM-5E44C 50-59 years, male 3.1
GTEX-12126-1026-SM-5P9JJ 20-29 years, male 3.0
GTEX-131YS-3126-SM-5KLYT 60-69 years, female 3.0
GTEX-13NYC-2826-SM-5K7WR 60-69 years, male 3.0
GTEX-1445S-3026-SM-5O9BR 60-69 years, male 3.0
GTEX-145MF-2726-SM-5O995 50-59 years, male 3.0
GTEX-11DXW-1126-SM-5H12Q 40-49 years, male 2.9
GTEX-12WSH-3026-SM-5CVNI 50-59 years, male 2.9
GTEX-13FXS-3126-SM-5J2NN 50-59 years, male 2.9
GTEX-13JVG-3126-SM-5L3FH 60-69 years, male 2.9
GTEX-13O3Q-2926-SM-5KM45 50-59 years, male 2.9
GTEX-13VXU-2926-SM-5LU5C 50-59 years, male 2.9
GTEX-144FL-3026-SM-5O99C 50-59 years, male 2.9
GTEX-R55F-1326-SM-5S2V4 50-59 years, male 2.9
GTEX-ZZPT-3026-SM-5GZXH 50-59 years, male 2.9
GTEX-11GSO-2926-SM-5HL73 60-69 years, male 2.8
GTEX-11GSP-3226-SM-5986O 60-69 years, female 2.8
GTEX-11NV4-2126-SM-5N9DS 60-69 years, male 2.8
GTEX-11OC5-0726-SM-5P9JK 60-69 years, male 2.8
GTEX-11TTK-2926-SM-5PNYP 60-69 years, female 2.8
GTEX-1399T-3026-SM-5KLZC 60-69 years, male 2.8
GTEX-13NYS-3126-SM-5KLYV 60-69 years, male 2.8
GTEX-13OW7-3026-SM-5L3GY 50-59 years, male 2.8
GTEX-Y111-2726-SM-4TT3N 50-59 years, male 2.8
GTEX-ZVT3-3026-SM-5E43N 60-69 years, female 2.8
GTEX-132Q8-3026-SM-5PNVG 60-69 years, male 2.7
GTEX-13QIC-2926-SM-5J2NF 60-69 years, female 2.7
GTEX-144GL-3026-SM-5Q5CW 50-59 years, male 2.7
GTEX-RU72-3026-SM-5SI7Y 50-59 years, female 2.7
GTEX-11PRG-2926-SM-5987A 50-59 years, male 2.6
GTEX-12WSC-3026-SM-5GCNF 50-59 years, male 2.6
GTEX-131XW-3126-SM-5LZUC 50-59 years, female 2.6
GTEX-147GR-3026-SM-5S2ML 60-69 years, male 2.6
GTEX-117XS-3026-SM-5N9CA 60-69 years, male 2.5
GTEX-13JUV-2926-SM-5LZX7 40-49 years, female 2.5
GTEX-13O3O-3126-SM-5KM3H 60-69 years, female 2.5
GTEX-13PL6-3126-SM-5LUAR 40-49 years, female 2.5
GTEX-13S7M-3126-SM-5RQJQ 60-69 years, female 2.5
GTEX-145MG-3026-SM-5RQJA 50-59 years, male 2.5
GTEX-ZE7O-3126-SM-5HL5X 50-59 years, female 2.5
GTEX-11EMC-3226-SM-5EGKW 60-69 years, female 2.4
GTEX-139T8-1026-SM-5J2MC 60-69 years, male 2.4
GTEX-13SLX-3126-SM-5S2Q5 50-59 years, female 2.4
GTEX-ZAJG-3126-SM-5HL9J 50-59 years, female 2.4
GTEX-12ZZW-2926-SM-5LZUP 50-59 years, male 2.3
GTEX-YJ89-3026-SM-5IFJI 60-69 years, male 2.2
GTEX-1117F-3226-SM-5N9CT 60-69 years, female 1.8
Show all
Brain - Frontal Cortex (BA9)
RPKM: 3.9
Samples: 108

Max RPKM: 7.3
Min RPKM: 1.5
Std RPKM: 1.0
Median RPKM: 3.7
GTEX-XMD1-0011-R10A-SM-4AT4A 60-69 years, male 7.3
GTEX-13FLW-0011-R10b-SM-5LZZF 50-59 years, male 6.7
GTEX-NL4W-0011-R10A-SM-2I3DY 50-59 years, male 6.5
GTEX-WWYW-0011-R10A-SM-3NB35 50-59 years, female 6.5
GTEX-QDT8-0011-R10A-SM-32PKG 30-39 years, female 6.4
GTEX-QVJO-0011-R10A-SM-2S1QJ 60-69 years, female 6.4
GTEX-S7SE-0011-R10A-SM-2XCDF 50-59 years, male 5.7
GTEX-N7MT-0011-R10A-SM-2I3E1 60-69 years, female 5.3
GTEX-QVUS-0011-R10A-SM-3GIK3 60-69 years, female 5.3
GTEX-ZE7O-0011-R10a-SM-57WAZ 50-59 years, female 5.3
GTEX-NPJ7-0011-R10A-SM-2I3E5 60-69 years, female 5.2
GTEX-X585-0011-R10A-SM-46MUY 50-59 years, male 5.1
GTEX-YFC4-0011-R10a-SM-4SOK5 40-49 years, female 5.0
GTEX-145MH-0011-R10b-SM-5PNUK 50-59 years, male 4.9
GTEX-OXRN-0011-R10A-SM-2I5GC 50-59 years, male 4.9
GTEX-Q2AG-0011-R10A-SM-2HMLA 40-49 years, female 4.9
GTEX-WVLH-0011-R10A-SM-3MJFM 50-59 years, male 4.9
GTEX-X4XX-0011-R10B-SM-46MWO 60-69 years, male 4.8
GTEX-13OVL-0011-R10a-SM-5L3GS 50-59 years, male 4.7
GTEX-XLM4-0011-R10A-SM-4AT5P 60-69 years, male 4.7
GTEX-12126-0011-R10b-SM-5BC6T 20-29 years, male 4.6
GTEX-13X6K-0011-R10a-SM-5P9JR 60-69 years, female 4.6
GTEX-N7MS-0011-R10A-SM-2HMJK 60-69 years, male 4.6
GTEX-NL3H-0011-R10A-SM-2I3E9 60-69 years, male 4.6
GTEX-WL46-0011-R10A-SM-3MJFQ 50-59 years, male 4.6
GTEX-12WSD-0011-R10b-SM-5GU79 60-69 years, female 4.5
GTEX-12WSE-0011-R10b-SM-5P9JV 20-29 years, male 4.5
GTEX-T6MN-0011-R10A-SM-32QP7 50-59 years, male 4.5
GTEX-ZDXO-0011-R10a-SM-4WWD8 60-69 years, male 4.5
GTEX-131YS-0011-R10b-SM-5EQ5N 60-69 years, female 4.4
GTEX-13S7M-0011-R10b-SM-5PNZB 60-69 years, female 4.4
GTEX-ZVZQ-0011-R10b-SM-51MRT 60-69 years, female 4.4
GTEX-QMR6-0011-R10A-SM-32PKO 50-59 years, male 4.2
GTEX-12WSA-0011-R10b-SM-5P9ET 60-69 years, male 4.1
GTEX-131XH-0011-R10a-SM-5EGLJ 50-59 years, male 4.1
GTEX-P44H-0011-R10A-SM-2XCEK 40-49 years, male 4.1
GTEX-T5JC-0011-R10A-SM-32PM2 20-29 years, male 4.1
GTEX-11ZUS-0011-R10b-SM-5BC79 30-39 years, male 4.0
GTEX-12ZZX-0011-R10b-SM-5DUWK 40-49 years, female 4.0
GTEX-13OW8-0011-R10a-SM-5L3H6 60-69 years, male 4.0
GTEX-13X6I-0011-R10a-SM-5PNWI 60-69 years, male 4.0
GTEX-ZAB4-0011-R10a-SM-4SOKH 40-49 years, male 4.0
GTEX-12ZZZ-0011-R10a-SM-5P9HC 60-69 years, male 3.9
GTEX-132Q8-0011-R10b-SM-5DUWZ 60-69 years, male 3.9
GTEX-13N1W-0011-R10b-SM-5MR4H 70-79 years, male 3.9
GTEX-13N2G-0011-R10a-SM-5MR34 60-69 years, male 3.9
GTEX-WZTO-0011-R10B-SM-4E3KB 40-49 years, male 3.9
GTEX-13CZV-0011-R10b-SM-5LZYD 60-69 years, male 3.8
GTEX-13OVJ-0011-R10b-SM-5L3HT 50-59 years, female 3.8
GTEX-13QIC-0011-R10a-SM-5O9C7 60-69 years, female 3.8
GTEX-14BIN-0011-R10a-SM-5S2UA 50-59 years, female 3.8
GTEX-Y8DK-0011-R10A-SM-4SOK1 60-69 years, male 3.8
GTEX-11WQC-0011-R10a-SM-57WCT 60-69 years, male 3.7
GTEX-13RTJ-0011-R10b-SM-5O9CW 60-69 years, male 3.7
GTEX-13X6J-0011-R10b-SM-5PNWA 50-59 years, male 3.7
GTEX-NPJ8-0011-R10A-SM-2YUMO 40-49 years, male 3.7
GTEX-RVPU-0011-R10A-SM-2XCAH 50-59 years, male 3.7
GTEX-YJ89-0011-R10a-SM-4SOK9 60-69 years, male 3.7
GTEX-Z93S-0011-R10a-SM-4RGNM 50-59 years, male 3.7
GTEX-12WSM-0011-R10a-SM-5DUWV 60-69 years, male 3.6
GTEX-1313W-0011-R10b-SM-5DUXA 50-59 years, female 3.6
GTEX-13FLV-0011-R10b-SM-5LZZ2 50-59 years, male 3.6
GTEX-145LS-0011-R10a-SM-5PNUQ 60-69 years, female 3.6
GTEX-OXRO-0011-R10A-SM-2I5EH 60-69 years, female 3.6
GTEX-ZUA1-0011-R10a-SM-51MT6 40-49 years, male 3.6
GTEX-11GSP-0011-R10a-SM-5NQ7J 60-69 years, female 3.5
GTEX-12WSF-0011-R10a-SM-5LZVH 70-79 years, male 3.5
GTEX-12WSH-0011-R10a-SM-5LZUS 50-59 years, male 3.5
GTEX-13FTZ-0011-R10b-SM-5KLZS 60-69 years, male 3.5
GTEX-13O3Q-0011-R10b-SM-5KM39 50-59 years, male 3.5
GTEX-1445S-0011-R10a-SM-5PNWB 60-69 years, male 3.5
GTEX-145MG-0011-R10a-SM-5PNWG 50-59 years, male 3.5
GTEX-TSE9-0011-R10A-SM-3DB7O 60-69 years, female 3.5
GTEX-X4EP-0011-R10B-SM-4QASJ 60-69 years, female 3.5
GTEX-11WQK-0011-R10a-SM-5BC6R 50-59 years, male 3.4
GTEX-13FXS-0011-R10a-SM-5J2MA 50-59 years, male 3.4
GTEX-13G51-0011-R10b-SM-5LZYF 60-69 years, male 3.4
GTEX-13QJC-0011-R10a-SM-5SI63 60-69 years, female 3.4
GTEX-14BIL-0011-R10a-SM-5SI75 50-59 years, male 3.4
GTEX-14ASI-0011-R10b-SM-5S2VZ 60-69 years, male 3.3
GTEX-ZF28-0011-R10a-SM-4WWEH 60-69 years, male 3.3
GTEX-12WSC-0011-R10a-SM-5GU57 50-59 years, male 3.2
GTEX-13SLW-0011-R10a-SM-5S2UI 70-79 years, male 3.2
GTEX-147GR-0011-R10b-SM-5S2UM 60-69 years, male 3.2
GTEX-139TS-0011-R10a-SM-5K7TU 60-69 years, male 3.1
GTEX-13FHO-0011-R10b-SM-5J2MM 60-69 years, male 3.1
GTEX-145LU-0011-R10a-SM-5PNWJ 50-59 years, male 3.1
GTEX-147F4-0011-R10b-SM-5S2WC 50-59 years, male 3.1
GTEX-12ZZY-0011-R10b-SM-5HL7W 60-69 years, male 3.0
GTEX-13NYS-0011-R10a-SM-5MR4S 60-69 years, male 2.9
GTEX-13O3O-0011-R10a-SM-5LUA9 60-69 years, female 2.9
GTEX-ZV68-0011-R10a-SM-51MT7 50-59 years, female 2.9
GTEX-11H98-0011-R10b-SM-5NQ98 50-59 years, male 2.8
GTEX-13JVG-0011-R10b-SM-5KM2P 60-69 years, male 2.8
GTEX-13OW6-0011-R10a-SM-5L3HE 50-59 years, male 2.8
GTEX-13OW7-0011-R10a-SM-5L3H3 50-59 years, male 2.8
GTEX-X261-0011-R10B-SM-4E3JT 50-59 years, male 2.8
GTEX-ZXG5-0011-R10a-SM-57WDD 60-69 years, male 2.8
GTEX-13NYB-0011-R10a-SM-5KM43 40-49 years, male 2.7
GTEX-13JUV-0011-R10b-SM-5LZXR 40-49 years, female 2.6
GTEX-ZVT3-0011-R10b-SM-57WB6 60-69 years, female 2.6
GTEX-14753-0011-R10b-SM-5S2WE 60-69 years, male 2.5
GTEX-12ZZW-0011-R10b-SM-5HL9X 50-59 years, male 2.4
GTEX-13SLX-0011-R10a-SM-5P9HV 50-59 years, female 2.4
GTEX-1477Z-0011-R10b-SM-5S2RF 60-69 years, male 2.1
GTEX-13IVO-0011-R10a-SM-5LZY3 70-79 years, male 1.9
GTEX-13NZA-0011-R10b-SM-5KM54 60-69 years, male 1.9
GTEX-131XW-0011-R10a-SM-5DUVA 50-59 years, female 1.5
Show all

CEREBRAL CORTEX - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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