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TISSUE ATLAS PRIMARY DATA BREAST

GENE/PROTEIN

Antibody validation


Dictionary

Breast

BREAST - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:16.8TPM
GTEx:21.0RPKM
FANTOM5:21.4Tags Per Million

BREAST - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Adipocytes:Not detected
Glandular cells:Medium
Myoepithelial cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA040086

 

Adipocytes

Not detected  

Glandular cells

Medium  

Myoepithelial cells

Not detected  
 
 

BREAST - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

16.8

overview Female, age 52 Sample 1
TPM: 13.8
Cell types%
Glandular cells: 15
Adipocytes: 5
Other cell types: 80
overview Female, age 80 Sample 2
TPM: 15.7
Cell types%
Glandular cells: 5
Adipocytes: 15
Other cell types: 80
overview Female, age 47 Sample 3
TPM: 21.4
Cell types%
Glandular cells: 5
Adipocytes: 5
Other cell types: 90
overview Female, age 38 Sample 4
TPM: 16.4
Cell types%
Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

21.0

GTEx sample id

Sample description

RPKM

Breast - Mammary Tissue
RPKM: 21.0
Samples: 214

Max RPKM: 41.4
Min RPKM: 7.6
Std RPKM: 5.8
Median RPKM: 20.5
GTEX-13FTY-2226-SM-5J1ND 40-49 years, female 41.4
GTEX-YFC4-1426-SM-5IFJG 40-49 years, female 37.8
GTEX-13PL6-2926-SM-5L3I2 40-49 years, female 35.4
GTEX-14ABY-2126-SM-5QGQZ 50-59 years, male 32.8
GTEX-11EMC-2026-SM-5A5JV 60-69 years, female 32.4
GTEX-131YS-0626-SM-5EGKL 60-69 years, female 32.2
GTEX-QEL4-2126-SM-447AE 50-59 years, male 32.2
GTEX-139T8-0826-SM-5L3DE 60-69 years, male 31.5
GTEX-13NZ9-1026-SM-5MR5K 50-59 years, male 31.2
GTEX-12ZZX-1126-SM-5EGKB 40-49 years, female 31.1
GTEX-13NZB-2126-SM-5MR4Y 30-39 years, male 31.0
GTEX-Q2AG-0326-SM-48U1O 40-49 years, female 30.8
GTEX-R3RS-0626-SM-48FE1 40-49 years, female 30.4
GTEX-X15G-1626-SM-3NMB3 50-59 years, female 30.3
GTEX-XMD1-0826-SM-4AT52 60-69 years, male 30.3
GTEX-XUZC-1626-SM-4BRVP 30-39 years, female 29.9
GTEX-XQ8I-2426-SM-4WAXY 50-59 years, male 29.7
GTEX-11PRG-0826-SM-5EQ6A 50-59 years, male 29.6
GTEX-QEG5-0726-SM-4R1JQ 20-29 years, male 29.3
GTEX-U3ZN-1926-SM-4DXSG 30-39 years, female 29.1
GTEX-XMK1-1126-SM-4IHJ8 40-49 years, male 28.8
GTEX-13W3W-1226-SM-5LU4H 60-69 years, female 28.7
GTEX-TML8-1226-SM-32QON 40-49 years, female 28.6
GTEX-WYVS-1726-SM-3NMAY 40-49 years, female 28.4
GTEX-U3ZH-1426-SM-4DXSR 30-39 years, male 28.3
GTEX-11NSD-0926-SM-5N9DR 20-29 years, male 28.1
GTEX-139TU-0626-SM-5KM3X 60-69 years, male 28.0
GTEX-T6MN-0726-SM-32PML 50-59 years, male 27.9
GTEX-ZC5H-2626-SM-5J2MG 40-49 years, female 27.8
GTEX-UPK5-2326-SM-3P5Z8 40-49 years, male 27.7
GTEX-RU72-0626-SM-46MUI 50-59 years, female 27.6
GTEX-132AR-0826-SM-5EGK6 50-59 years, female 27.4
GTEX-11EM3-1326-SM-5N9C6 20-29 years, female 27.1
GTEX-ZVTK-0326-SM-51MRR 20-29 years, male 27.1
GTEX-11ZUS-0826-SM-5FQUY 30-39 years, male 26.7
GTEX-SIU7-1626-SM-4BRUK 50-59 years, male 26.7
GTEX-XQ3S-1326-SM-4BOPQ 20-29 years, male 26.7
GTEX-ZF2S-2026-SM-5E461 50-59 years, female 26.7
GTEX-13OW5-2226-SM-5L3HC 60-69 years, male 26.4
GTEX-13NZ8-0126-SM-5IJCT 60-69 years, female 26.2
GTEX-VUSG-2226-SM-4KKZO 50-59 years, male 25.9
GTEX-13CF2-2026-SM-5K7VI 60-69 years, male 25.8
GTEX-Y3IK-2326-SM-4WWDT 50-59 years, female 25.8
GTEX-13N11-1726-SM-5J1OJ 50-59 years, female 25.6
GTEX-RWS6-1926-SM-47JXY 60-69 years, female 25.5
GTEX-131XW-0726-SM-5EGK3 50-59 years, female 25.4
GTEX-ZVE2-1226-SM-5NQ8R 50-59 years, male 25.4
GTEX-11GS4-2126-SM-5A5KR 60-69 years, male 25.3
GTEX-11LCK-2426-SM-5HL5F 30-39 years, male 25.3
GTEX-132Q8-1426-SM-5EGK7 60-69 years, male 25.2
GTEX-133LE-1726-SM-5K7VQ 20-29 years, female 25.2
GTEX-S32W-2026-SM-4AD6E 50-59 years, female 25.2
GTEX-T5JW-2026-SM-4DM63 20-29 years, female 25.2
GTEX-Y111-2026-SM-4SOJA 50-59 years, male 25.2
GTEX-S33H-0326-SM-4AD6N 30-39 years, male 25.1
GTEX-ZEX8-2226-SM-57WC6 50-59 years, male 25.0
GTEX-13D11-1026-SM-5IJFB 50-59 years, female 24.9
GTEX-ZAJG-0626-SM-5HL8X 50-59 years, female 24.9
GTEX-ZXES-0826-SM-5E43C 30-39 years, female 24.9
GTEX-144GL-2026-SM-5LU3O 50-59 years, male 24.7
GTEX-XV7Q-2326-SM-4BRVZ 40-49 years, female 24.7
GTEX-QDT8-0626-SM-48TYW 30-39 years, female 24.5
GTEX-ZTTD-1026-SM-51MRD 50-59 years, male 24.4
GTEX-146FH-0826-SM-5SI8T 50-59 years, female 24.2
GTEX-XUW1-2326-SM-4BOO5 50-59 years, female 24.1
GTEX-S341-1526-SM-4AD6K 40-49 years, female 24.0
GTEX-WRHU-0326-SM-3MJFY 50-59 years, female 24.0
GTEX-11DXW-0626-SM-5N9ER 40-49 years, male 23.9
GTEX-1269C-2426-SM-5FQSN 60-69 years, female 23.9
GTEX-XUJ4-1926-SM-4BOOV 60-69 years, female 23.9
GTEX-ZYT6-0126-SM-5E45J 30-39 years, male 23.9
GTEX-XMD2-0926-SM-4WWEF 60-69 years, female 23.8
GTEX-111YS-1926-SM-5GICC 60-69 years, male 23.7
GTEX-11ONC-2126-SM-5HL6E 60-69 years, male 23.6
GTEX-S7SE-0826-SM-4AT4D 50-59 years, male 23.5
GTEX-UJHI-1426-SM-3DB9C 50-59 years, female 23.5
GTEX-145LT-0726-SM-5S2VM 40-49 years, male 23.4
GTEX-R53T-1526-SM-48FEK 50-59 years, female 23.4
GTEX-1192X-2326-SM-5987X 50-59 years, male 23.3
GTEX-11EI6-0626-SM-5985T 60-69 years, male 23.3
GTEX-145MN-1926-SM-5SIAI 30-39 years, male 23.2
GTEX-S4UY-0726-SM-4AD6X 40-49 years, female 23.2
GTEX-132NY-0826-SM-5K7Y7 60-69 years, male 22.8
GTEX-Y5V5-2126-SM-4WWFO 60-69 years, female 22.8
GTEX-R55F-1726-SM-2TF4R 50-59 years, male 22.7
GTEX-Y5LM-1726-SM-4VDSX 40-49 years, female 22.6
GTEX-T5JC-2126-SM-32PMO 20-29 years, male 22.4
GTEX-QVJO-1826-SM-447C9 60-69 years, female 22.3
GTEX-ZU9S-1926-SM-5NQBP 30-39 years, male 22.3
GTEX-11P81-1926-SM-5BC53 30-39 years, female 22.2
GTEX-XYKS-1326-SM-4BRUN 60-69 years, female 22.1
GTEX-YJ8O-2226-SM-5IFHW 40-49 years, female 21.8
GTEX-ZLV1-1426-SM-4WWES 60-69 years, female 21.8
GTEX-ZTX8-1226-SM-4YCE9 20-29 years, male 21.8
GTEX-WXYG-2226-SM-4E3IM 50-59 years, female 21.7
GTEX-1399U-1826-SM-5PNZ1 50-59 years, female 21.5
GTEX-R55D-0826-SM-48FEA 50-59 years, male 21.3
GTEX-147F4-2826-SM-5NQBN 50-59 years, male 21.2
GTEX-11O72-2126-SM-5N9FO 40-49 years, male 21.1
GTEX-WY7C-2726-SM-3NB3P 50-59 years, male 21.1
GTEX-S4Q7-1126-SM-4AD6R 20-29 years, male 21.0
GTEX-WYBS-0926-SM-3NM94 60-69 years, female 20.9
GTEX-11GSO-1926-SM-5A5K3 60-69 years, male 20.8
GTEX-11TT1-2126-SM-5GU5Y 20-29 years, male 20.7
GTEX-S4P3-1326-SM-4AD6V 50-59 years, female 20.7
GTEX-T6MO-0326-SM-32QOK 40-49 years, female 20.6
GTEX-TKQ2-1826-SM-33HB2 50-59 years, male 20.6
GTEX-T2IS-1526-SM-32QPR 20-29 years, female 20.5
GTEX-WYJK-1326-SM-3NB2T 50-59 years, male 20.5
GTEX-ZYWO-2326-SM-5GZY4 40-49 years, female 20.5
GTEX-11EQ9-1826-SM-5Q5AJ 30-39 years, male 20.4
GTEX-Y5V6-2126-SM-4WWFX 60-69 years, male 20.4
GTEX-ZZPU-0626-SM-5E43T 50-59 years, female 20.4
GTEX-11WQC-1726-SM-5GU4W 60-69 years, male 20.0
GTEX-12WSN-1326-SM-5GCNT 40-49 years, male 19.9
GTEX-13QIC-2326-SM-5LU5N 60-69 years, female 19.9
GTEX-1122O-1226-SM-5H113 60-69 years, female 19.8
GTEX-X4EP-2926-SM-3P5YQ 60-69 years, female 19.8
GTEX-11P7K-0726-SM-5EGKX 30-39 years, male 19.7
GTEX-Y8LW-1626-SM-5IFHX 50-59 years, female 19.4
GTEX-11I78-2226-SM-5PNYA 50-59 years, female 19.3
GTEX-SE5C-2126-SM-4BRUJ 40-49 years, female 19.3
GTEX-12KS4-0126-SM-5Q5A5 30-39 years, male 19.2
GTEX-13FTW-1426-SM-5LZWZ 40-49 years, male 19.2
GTEX-14AS3-1626-SM-5S2OY 40-49 years, female 19.2
GTEX-YFCO-1826-SM-4W1YH 40-49 years, male 19.2
GTEX-ZVT2-1826-SM-5NQ8W 50-59 years, female 19.2
GTEX-T2YK-2226-SM-32QPT 50-59 years, male 19.1
GTEX-13O3P-0826-SM-5L3DH 50-59 years, male 19.0
GTEX-WOFL-0826-SM-3MJG1 60-69 years, male 19.0
GTEX-YB5E-1726-SM-5IFJ3 40-49 years, male 18.9
GTEX-ZUA1-1526-SM-59HLS 40-49 years, male 18.9
GTEX-12WSB-0626-SM-59HJO 60-69 years, female 18.8
GTEX-Y3I4-1526-SM-4TT7K 50-59 years, male 18.8
GTEX-117YX-1426-SM-5H12H 50-59 years, male 18.6
GTEX-13O3Q-2226-SM-5KM4O 50-59 years, male 18.4
GTEX-13FHO-0826-SM-5L3E8 60-69 years, male 18.3
GTEX-TMMY-0726-SM-33HBE 40-49 years, female 18.2
GTEX-XBED-1626-SM-47JYN 60-69 years, male 18.2
GTEX-14E6E-1326-SM-5S2NR 30-39 years, male 18.0
GTEX-ZY6K-1626-SM-5GZWV 50-59 years, male 18.0
GTEX-13113-1726-SM-5GCOO 60-69 years, female 17.9
GTEX-W5X1-2326-SM-3GIL6 40-49 years, female 17.9
GTEX-ZVZQ-0826-SM-51MRF 60-69 years, female 17.9
GTEX-1313W-0826-SM-5EQ4T 50-59 years, female 17.8
GTEX-13OW8-0226-SM-5K7UP 60-69 years, male 17.8
GTEX-XOT4-0726-SM-4GIAW 60-69 years, female 17.8
GTEX-YB5K-1626-SM-5IFIN 40-49 years, female 17.8
GTEX-Y8E4-1626-SM-5S2MW 40-49 years, male 17.7
GTEX-ZDXO-0126-SM-5S2ND 60-69 years, male 17.7
GTEX-X4XY-0926-SM-4E3JD 60-69 years, male 17.5
GTEX-ZDTT-2126-SM-5S2OJ 60-69 years, male 17.5
GTEX-ZWKS-2826-SM-5NQ74 30-39 years, male 17.5
GTEX-1314G-1226-SM-5BC6D 30-39 years, male 17.1
GTEX-139T6-1626-SM-5PNYZ 50-59 years, male 17.1
GTEX-XGQ4-0926-SM-4AT4U 50-59 years, male 17.1
GTEX-YEC3-1026-SM-5IFI5 50-59 years, male 17.1
GTEX-145MO-0826-SM-5NQBL 60-69 years, male 16.9
GTEX-ZF29-1926-SM-5S2P1 60-69 years, female 16.8
GTEX-1117F-2826-SM-5GZXL 60-69 years, female 16.7
GTEX-1211K-1926-SM-5EQLB 60-69 years, female 16.7
GTEX-WI4N-1426-SM-3LK7H 40-49 years, female 16.7
GTEX-ZV6S-1826-SM-5NQ8D 40-49 years, female 16.7
GTEX-ZAB4-2526-SM-5HL8M 40-49 years, male 16.4
GTEX-ZPIC-1126-SM-5BC7F 40-49 years, female 16.4
GTEX-12BJ1-1826-SM-5HL9N 60-69 years, male 16.3
GTEX-X261-0626-SM-3NMD9 50-59 years, male 16.3
GTEX-TKQ1-0226-SM-33HB5 30-39 years, male 16.1
GTEX-ZQUD-1926-SM-51MSA 30-39 years, male 16.1
GTEX-11ZTT-2326-SM-5EQLG 60-69 years, female 16.0
GTEX-UTHO-1026-SM-3GAF7 60-69 years, male 15.8
GTEX-11OF3-1926-SM-59889 60-69 years, male 15.6
GTEX-ZDYS-1126-SM-5K7UB 50-59 years, male 15.6
GTEX-145ME-1526-SM-5Q5F2 40-49 years, female 15.5
GTEX-ZF3C-2326-SM-5S2MZ 50-59 years, female 15.4
GTEX-VJWN-0726-SM-3GIJ8 50-59 years, female 15.3
GTEX-RUSQ-2026-SM-4GIAK 50-59 years, male 15.2
GTEX-PSDG-1626-SM-48TCQ 50-59 years, male 15.1
GTEX-11NV4-2026-SM-5N9DG 60-69 years, male 15.0
GTEX-13S86-1226-SM-5S2OA 40-49 years, male 14.9
GTEX-ZQG8-0726-SM-5P9H9 60-69 years, female 14.8
GTEX-QMRM-1626-SM-4R1KV 50-59 years, male 14.7
GTEX-Y114-2026-SM-4TT7L 50-59 years, female 14.7
GTEX-Y9LG-1426-SM-5IFJZ 30-39 years, male 14.7
GTEX-ZA64-1526-SM-5CVMD 20-29 years, male 14.7
GTEX-ZV7C-1826-SM-5NQ83 50-59 years, male 14.6
GTEX-13O61-1826-SM-5KM4I 60-69 years, male 14.5
GTEX-13W46-0826-SM-5LU3H 50-59 years, male 14.4
GTEX-WFON-1826-SM-3GILG 40-49 years, male 14.4
GTEX-ZVT4-1026-SM-57WC4 50-59 years, female 14.4
GTEX-11P82-1326-SM-5HL62 20-29 years, male 14.3
GTEX-11DXZ-1926-SM-5GZZL 50-59 years, male 14.1
GTEX-12WSK-2226-SM-5GCO5 40-49 years, female 14.1
GTEX-13FTX-1126-SM-5N9EN 20-29 years, female 14.1
GTEX-117XS-1926-SM-5GICO 60-69 years, male 13.8
GTEX-ZYW4-0826-SM-5GIDG 60-69 years, male 13.7
GTEX-ZYFC-0826-SM-5E44K 50-59 years, male 13.5
GTEX-13O3O-0826-SM-5K7WE 60-69 years, female 13.4
GTEX-11DXY-2326-SM-5GICW 60-69 years, male 13.1
GTEX-11DZ1-0326-SM-5N9BN 50-59 years, male 13.1
GTEX-ZZ64-1226-SM-5E43R 20-29 years, male 13.1
GTEX-REY6-2426-SM-48FF5 60-69 years, male 12.8
GTEX-144GM-0926-SM-5O994 20-29 years, male 12.6
GTEX-12WSM-1726-SM-5BC6J 60-69 years, male 12.4
GTEX-ZT9W-2026-SM-51MRA 50-59 years, male 12.0
GTEX-13CF3-2126-SM-5IFJP 60-69 years, female 11.7
GTEX-13N1W-0626-SM-5MR4U 70-79 years, male 11.7
GTEX-U8XE-0826-SM-4E3J1 30-39 years, male 11.4
GTEX-11WQK-2426-SM-5GU5C 50-59 years, male 10.5
GTEX-13PVQ-1026-SM-5KM3M 50-59 years, male 10.4
GTEX-14753-2426-SM-5LU8U 60-69 years, male 10.2
GTEX-ZLFU-2126-SM-4WWEV 40-49 years, male 9.5
GTEX-11TUW-1826-SM-5BC5D 60-69 years, male 8.4
GTEX-U412-1826-SM-4DXTJ 60-69 years, male 7.6
Show all

BREAST - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

21.4

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 21.4
FF:10080-102A8 77 years, female 21.4

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