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TISSUE ATLAS PRIMARY DATA KIDNEY

GENE/PROTEIN

Antibody validation


Dictionary

Kidney

Tissue proteome

Kidney

KIDNEY - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:11.3TPM
GTEx:21.6RPKM
FANTOM5:28.0Tags Per Million

KIDNEY - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in glomeruli:Low
Cells in tubules:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA040086

 

Cells in glomeruli

Low  

Cells in tubules

High  
 
 
 

KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

11.3

overview Female, age 58 Sample 1
TPM: 13.6
Cell types%
Cells in tubules: 60
Cells in glomeruli: 20
Fibroblasts: 5
Other cell types: 15
overview Female, age 67 Sample 2
TPM: 12.3
Cell types%
Cells in tubules: 70
Cells in glomeruli: 15
Fibroblasts: 10
Other cell types: 5
overview Female, age 55 Sample 3
TPM: 13.3
Cell types%
Cells in tubules: 80
Cells in glomeruli: 10
Fibroblasts: 5
Other cell types: 5
overview Male, age 46 Sample 4
TPM: 11.4
Cell types%
Cells in tubules: 60
Cells in glomeruli: 25
Fibroblasts: 5
Other cell types: 10
overview Female, age 57 Sample 5
TPM: 5.3
Cell types%
Cells in tubules: 60
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 20
overview Male, age 78 Sample 6
TPM: 12.5
Cell types%
Cells in tubules: 65
Cells in glomeruli: 10
Fibroblasts: 5
Other cell types: 20
overview Male, age 73 Sample 7
TPM: 12.4
Cell types%
Cells in tubules: 60
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 20
overview Female, age 59 Sample 8
TPM: 15.4
Cell types%
Cells in tubules: 65
Cells in glomeruli: 10
Fibroblasts: 10
Other cell types: 15
overview Female, age 48 Sample 9
TPM: 5.9
Cell types%
Cells in tubules: 60
Cells in glomeruli: 5
Fibroblasts: 10
Other cell types: 25

KIDNEY - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

21.6

GTEx sample id

Sample description

RPKM

Kidney - Cortex
RPKM: 21.6
Samples: 32

Max RPKM: 40.4
Min RPKM: 7.9
Std RPKM: 7.5
Median RPKM: 20.6
GTEX-13112-2126-SM-5GCO4 50-59 years, male 40.4
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 39.5
GTEX-RN64-1626-SM-48FD7 50-59 years, male 38.2
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 35.7
GTEX-UPIC-1126-SM-4IHLO 20-29 years, female 27.0
GTEX-QDVN-1626-SM-48TZC 50-59 years, male 26.3
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 24.7
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 23.6
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 23.2
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 23.1
GTEX-12696-0926-SM-5FQTV 60-69 years, male 22.3
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 21.8
GTEX-QLQW-1626-SM-4R1K1 30-39 years, male 21.5
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 21.2
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 21.1
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 20.7
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 20.4
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 19.8
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 19.1
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 19.1
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 18.5
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 17.3
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 17.2
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 17.1
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 16.9
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 16.4
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 15.8
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 15.1
GTEX-N7MS-1626-SM-3LK5F 60-69 years, male 14.9
GTEX-NPJ8-2226-SM-3TW8D 40-49 years, male 14.3
GTEX-ZYFD-1526-SM-5NQ7T 50-59 years, male 11.7
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 7.9
Show all

KIDNEY - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

28.0

FANTOM5 sample id

Sample description

Tags Per Million

Kidney
Tags Per Million: 28.0
FF:10017-101C8 60,62,63 years, female 28.0

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