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TISSUE ATLAS PRIMARY DATA LIVER

GENE/PROTEIN

Antibody validation


Dictionary

Liver

Tissue proteome

Liver

LIVER - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:9.1TPM
GTEx:13.7RPKM
FANTOM5:34.3Tags Per Million

LIVER - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Bile duct cells:Not detected
Hepatocytes:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA040086

 

Bile duct cells

Not detected  

Hepatocytes

Medium  
 
 
 

LIVER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

9.1

N/A Female, age 60 Sample 1
TPM: 7.9
overview Male, age 54 Sample 2
TPM: 6.9
Cell types%
Hepatocytes: 80
Fibroblasts: 15
Other cell types: 5
overview Male, age 74 Sample 3
TPM: 6.7
Cell types%
Hepatocytes: 85
Fibroblasts: 5
Other cell types: 10
overview Female, age 62 Sample 4
TPM: 5.8
Cell types%
Hepatocytes: 70
Fibroblasts: 10
Other cell types: 20
overview Male, age 78 Sample 5
TPM: 5.8
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Male, age 53 Sample 6
TPM: 11.8
Cell types%
Hepatocytes: 80
Fibroblasts: 5
Other cell types: 15
overview Male, age 77 Sample 7
TPM: 10.1
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Female, age 72 Sample 8
TPM: 12
Cell types%
Hepatocytes: 50
Fibroblasts: 10
Other cell types: 40
overview Male, age 70 Sample 9
TPM: 8.6
Cell types%
Hepatocytes: 65
Fibroblasts: 10
Other cell types: 25
overview Female, age 23 Sample 10
TPM: 15.2
Cell types%
Hepatocytes: 70
Fibroblasts: 5
Other cell types: 25

LIVER - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

13.7

GTEx sample id

Sample description

RPKM

Liver
RPKM: 13.7
Samples: 119

Max RPKM: 26.5
Min RPKM: 5.8
Std RPKM: 3.6
Median RPKM: 13.5
GTEX-13N11-0926-SM-5IJG2 50-59 years, female 26.5
GTEX-139TU-0826-SM-5IJFG 60-69 years, male 23.6
GTEX-RNOR-1426-SM-48FDJ 50-59 years, female 22.2
GTEX-XBEC-1526-SM-4AT68 50-59 years, male 22.2
GTEX-RN64-1826-SM-48FDV 50-59 years, male 21.7
GTEX-13SLX-1226-SM-5S2Q6 50-59 years, female 20.2
GTEX-11GSP-0626-SM-5986T 60-69 years, female 19.9
GTEX-UTHO-2426-SM-4JBHD 60-69 years, male 19.6
GTEX-14A5I-1726-SM-5QGQ5 50-59 years, female 19.0
GTEX-T6MN-1226-SM-3NMA5 50-59 years, male 18.4
GTEX-ZYY3-0626-SM-5NQ6W 60-69 years, female 18.0
GTEX-WZTO-0626-SM-4PQYY 40-49 years, male 17.9
GTEX-UPIC-0926-SM-4IHLV 20-29 years, female 17.8
GTEX-11NV4-1326-SM-5HL6V 60-69 years, male 17.6
GTEX-13FLV-0326-SM-5N9DJ 50-59 years, male 17.6
GTEX-REY6-1226-SM-48FDR 60-69 years, male 17.4
GTEX-SJXC-1226-SM-4DM78 60-69 years, male 17.1
GTEX-ZVT3-1626-SM-5GU66 60-69 years, female 17.0
GTEX-13OW6-2626-SM-5IFF2 50-59 years, male 16.8
GTEX-Q2AG-1126-SM-48U1P 40-49 years, female 16.7
GTEX-1212Z-0226-SM-59HLF 60-69 years, male 16.5
GTEX-131YS-1626-SM-5HL6C 60-69 years, female 16.5
GTEX-ZAB4-0826-SM-5LU9D 40-49 years, male 16.5
GTEX-13NZ9-1326-SM-5MR3V 50-59 years, male 16.3
GTEX-12WSM-0726-SM-5GCOW 60-69 years, male 16.2
GTEX-YECK-1926-SM-4W21H 60-69 years, male 16.2
GTEX-11ZVC-0726-SM-5FQT9 50-59 years, female 16.1
GTEX-13NYB-1026-SM-5IFH3 40-49 years, male 16.1
GTEX-14DAQ-1726-SM-5S2R2 60-69 years, female 16.0
GTEX-139TS-1426-SM-5IFJD 60-69 years, male 15.9
GTEX-X4EP-1026-SM-4QAS5 60-69 years, female 15.8
GTEX-145LU-1326-SM-5LU9N 50-59 years, male 15.5
GTEX-QEL4-1226-SM-447A4 50-59 years, male 15.5
GTEX-13N2G-0926-SM-5IFGJ 60-69 years, male 15.2
GTEX-11WQC-0726-SM-5EQMR 60-69 years, male 15.1
GTEX-Q734-0326-SM-48U15 40-49 years, female 15.1
GTEX-13QJC-0726-SM-5RQJK 60-69 years, female 15.0
GTEX-145MF-0826-SM-5QGQA 50-59 years, male 15.0
GTEX-P78B-1326-SM-3P611 40-49 years, female 15.0
GTEX-X261-1726-SM-4PQYT 50-59 years, male 15.0
GTEX-13FTZ-0726-SM-5IFFY 60-69 years, male 14.9
GTEX-Y5V5-0926-SM-4VBPZ 60-69 years, female 14.9
GTEX-13VXU-0926-SM-5IFFH 50-59 years, male 14.7
GTEX-1497J-0726-SM-5Q5D1 60-69 years, male 14.6
GTEX-RTLS-1326-SM-46MUN 60-69 years, female 14.6
GTEX-14AS3-0126-SM-5Q5F4 40-49 years, female 14.5
GTEX-147F4-1426-SM-5LUA8 50-59 years, male 14.4
GTEX-S32W-1926-SM-4AD63 50-59 years, female 14.4
GTEX-X4XY-1626-SM-46MVN 60-69 years, male 14.4
GTEX-11OF3-0726-SM-5BC4Z 60-69 years, male 14.2
GTEX-13NZB-0626-SM-5IFH6 30-39 years, male 14.2
GTEX-RU72-1426-SM-46MUF 50-59 years, female 14.1
GTEX-YFC4-1526-SM-5IFJS 40-49 years, female 14.1
GTEX-13112-1426-SM-5EGH8 50-59 years, male 14.0
GTEX-13113-1326-SM-5GCOI 60-69 years, female 14.0
GTEX-1399T-0826-SM-5IFES 60-69 years, male 14.0
GTEX-11NUK-1226-SM-5P9GM 50-59 years, male 13.9
GTEX-147JS-1126-SM-5RQIW 60-69 years, male 13.8
GTEX-WYVS-1926-SM-4PQZ2 40-49 years, female 13.6
GTEX-PX3G-0826-SM-48TZS 20-29 years, female 13.5
GTEX-QEG4-1826-SM-4R1JN 30-39 years, male 13.4
GTEX-WQUQ-1926-SM-4OOSA 60-69 years, male 13.3
GTEX-12WSD-1426-SM-5GCN9 60-69 years, female 13.2
GTEX-139YR-0226-SM-5IFEM 50-59 years, male 13.2
GTEX-146FH-1526-SM-5NQBU 50-59 years, female 13.2
GTEX-132NY-0926-SM-5P9G3 60-69 years, male 13.0
GTEX-XOTO-0826-SM-4B65O 50-59 years, male 13.0
GTEX-ZTPG-1426-SM-51MT3 20-29 years, female 13.0
GTEX-11ZUS-2526-SM-59872 30-39 years, male 12.8
GTEX-12WSI-0226-SM-5GCNA 50-59 years, male 12.7
GTEX-QDVN-0826-SM-48TZ2 50-59 years, male 12.7
GTEX-Y5LM-0426-SM-4VBRO 40-49 years, female 12.7
GTEX-131XH-0626-SM-5LZWH 50-59 years, male 12.6
GTEX-1269C-0626-SM-5FQSS 60-69 years, female 12.5
GTEX-OOBJ-0826-SM-3NB2K 60-69 years, male 12.3
GTEX-S33H-1626-SM-4AD68 30-39 years, male 12.2
GTEX-UPK5-1426-SM-4JBHH 40-49 years, male 12.2
GTEX-145MO-2326-SM-5NQ9K 60-69 years, male 12.1
GTEX-13FTW-1126-SM-5J2NV 40-49 years, male 11.8
GTEX-11EQ9-0526-SM-5A5JZ 30-39 years, male 11.7
GTEX-QESD-2026-SM-447BI 20-29 years, male 11.7
GTEX-11ZTS-1426-SM-5EQMM 60-69 years, female 11.6
GTEX-12WSG-0626-SM-5FQTQ 50-59 years, female 11.6
GTEX-ZYT6-0626-SM-5E45V 30-39 years, male 11.6
GTEX-12KS4-1326-SM-5LUB3 30-39 years, male 11.4
GTEX-12696-0826-SM-5EGGE 60-69 years, male 11.2
GTEX-ZAB5-0426-SM-5CVMI 50-59 years, male 11.2
GTEX-11DXY-0526-SM-5EGGQ 60-69 years, male 11.1
GTEX-S4Z8-0526-SM-4AD4T 60-69 years, male 11.1
GTEX-1399R-1226-SM-5P9GF 30-39 years, male 11.0
GTEX-YB5E-0326-SM-5IFHU 40-49 years, male 11.0
GTEX-R53T-0326-SM-48FEC 50-59 years, female 10.9
GTEX-ZF2S-3026-SM-4WWCH 50-59 years, female 10.9
GTEX-ZZPU-0426-SM-5GZYH 50-59 years, female 10.9
GTEX-11DXZ-0126-SM-5EGGY 50-59 years, male 10.7
GTEX-QV44-0326-SM-4R1KD 50-59 years, male 10.6
GTEX-X4EO-1126-SM-4QARQ 60-69 years, female 10.5
GTEX-WFON-1726-SM-4LVMQ 40-49 years, male 10.3
GTEX-131XE-0326-SM-5LZVO 50-59 years, male 10.2
GTEX-13PVR-0126-SM-5S2PY 60-69 years, female 10.1
GTEX-RWSA-1426-SM-47JXA 40-49 years, male 10.1
GTEX-ZVT4-0626-SM-5E45T 50-59 years, female 10.1
GTEX-14753-1626-SM-5NQ9L 60-69 years, male 9.9
GTEX-ZF29-2026-SM-4WWB7 60-69 years, female 9.9
GTEX-12WSL-0226-SM-5CVMJ 50-59 years, male 9.8
GTEX-14C38-1526-SM-5RQJ7 50-59 years, male 9.5
GTEX-X3Y1-2726-SM-4PQZH 40-49 years, male 9.3
GTEX-14E1K-0326-SM-5S2PE 50-59 years, male 9.2
GTEX-YEC4-0826-SM-5P9FV 40-49 years, male 9.2
GTEX-12ZZZ-1326-SM-59HKW 60-69 years, male 9.1
GTEX-RM2N-1926-SM-48FCU 50-59 years, male 8.9
GTEX-TKQ2-1726-SM-4DXUP 50-59 years, male 8.5
GTEX-VUSG-0126-SM-4KL1X 50-59 years, male 8.5
GTEX-ZVP2-0626-SM-51MSO 50-59 years, male 8.4
GTEX-U3ZN-0226-SM-3DB8D 30-39 years, female 8.2
GTEX-144GM-1326-SM-5LU5E 20-29 years, male 6.9
GTEX-ZPU1-0826-SM-57WG2 40-49 years, male 6.8
GTEX-Z9EW-0426-SM-5CVM9 40-49 years, male 6.4
GTEX-13O3O-1826-SM-5IFGW 60-69 years, female 5.8
Show all

LIVER - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

34.3

FANTOM5 sample id

Sample description

Tags Per Million

Liver
Tags Per Million: 34.3
FF:10018-101C9 64,69,70 years, mixed 34.3

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