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TISSUE ATLAS PRIMARY DATA VAGINA

GENE/PROTEIN

Antibody validation


Dictionary

Vagina

VAGINA - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:31.7RPKM
FANTOM5:29.0Tags Per Million

VAGINA - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Squamous epithelial cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA027251

 

Antibody HPA027280

 

Antibody HPA028409

 

Antibody CAB002686

 

Squamous epithelial cells

Medium   Not detected   Medium   Not detected  
       
       
       

VAGINA - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


VAGINA - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

31.7

GTEx sample id

Sample description

RPKM

Vagina
RPKM: 31.7
Samples: 96

Max RPKM: 63.9
Min RPKM: 8.8
Std RPKM: 14.2
Median RPKM: 29.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 63.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 63.4
GTEX-Q734-1426-SM-48TZQ 40-49 years, female 61.4
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 61.3
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 60.8
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 60.6
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 57.6
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 57.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 56.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 54.8
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 51.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 50.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 49.7
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 48.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 47.9
GTEX-ZYWO-2026-SM-5GIDA 40-49 years, female 46.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 44.6
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 44.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 44.2
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 42.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 42.9
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 41.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 41.3
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 41.1
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 40.8
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 40.3
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 39.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 39.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 39.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 38.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 37.6
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 37.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 37.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 36.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 35.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 35.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 35.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 35.4
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 35.1
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 35.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 32.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 31.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 30.5
GTEX-PWOO-2026-SM-48TDE 40-49 years, female 30.3
GTEX-NL3G-2526-SM-4SOIE 60-69 years, female 29.7
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 29.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 29.7
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 29.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 29.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 28.9
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 28.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 28.2
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 28.2
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 27.7
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 27.6
GTEX-XUJ4-1626-SM-4BONV 60-69 years, female 27.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 26.7
GTEX-12WSB-2426-SM-5EGJC 60-69 years, female 25.8
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 24.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 24.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 24.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 24.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 24.2
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 24.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 23.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 23.3
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 21.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 21.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 21.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 21.4
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 21.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 20.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 20.1
GTEX-UPIC-1426-SM-4IHLQ 20-29 years, female 20.0
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 19.8
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 19.7
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 19.2
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 19.2
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 18.9
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 18.8
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 18.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 17.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 17.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 16.2
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 14.1
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 13.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 13.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 12.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 12.0
GTEX-QVJO-2526-SM-4R1KB 60-69 years, female 12.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 11.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 11.4
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 10.0
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 9.7
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 9.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 8.8
Show all

VAGINA - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

29.0

FANTOM5 sample id

Sample description

Tags Per Million

Vagina
Tags Per Million: 29.0
FF:10204-103F6 68 years, female 29.0

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The Human Protein Atlas project is funded
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