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TISSUE ATLAS PRIMARY DATA PROSTATE

GENE/PROTEIN

Antibody validation


Dictionary

Prostate

Tissue proteome

Prostate

PROSTATE - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:64.0TPM
GTEx:19.1RPKM
FANTOM5:46.4Tags Per Million

PROSTATE - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA001097

 

Glandular cells

High  
 
 
 

PROSTATE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

64.0

overview Male, age 62 Sample 1
TPM: 84.7
Cell types%
Glandular cells: 30
Smooth muscle cells: 55
Skeletal muscle cells: 5
Other cell types: 10
N/A Male, age 65 Sample 2
TPM: 64.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 60
Other cell types: 20
overview Male, age 65 Sample 3
TPM: 63.8
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 68 Sample 4
TPM: 76.2
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 60 Sample 5
TPM: 62.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 55
Other cell types: 5
overview Male, age 66 Sample 6
TPM: 86.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 45
Other cell types: 5
overview Male, age 63 Sample 7
TPM: 60.2
Cell types%
Glandular cells: 60
Smooth muscle cells: 35
Other cell types: 5
overview Male, age 66 Sample 8
TPM: 68.1
Cell types%
Glandular cells: 65
Smooth muscle cells: 30
Other cell types: 5
overview Male, age 58 Sample 9
TPM: 55.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 50
Other cell types: 5

PROSTATE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

19.1

GTEx sample id

Sample description

RPKM

Prostate
RPKM: 19.1
Samples: 106

Max RPKM: 31.1
Min RPKM: 9.0
Std RPKM: 4.8
Median RPKM: 18.3
GTEX-ZPU1-2026-SM-57WFI 40-49 years, male 31.1
GTEX-13FTW-1226-SM-5LZZ1 40-49 years, male 29.9
GTEX-SNOS-1026-SM-4DM4Y 40-49 years, male 29.2
GTEX-QV31-1026-SM-4R1K3 30-39 years, male 28.8
GTEX-11P7K-0626-SM-5985Z 30-39 years, male 27.8
GTEX-13111-1326-SM-5GCNO 50-59 years, male 27.7
GTEX-XMK1-1026-SM-4B65H 40-49 years, male 27.2
GTEX-11EQ9-1726-SM-5HL6U 30-39 years, male 27.1
GTEX-14E6E-1126-SM-5S2R4 30-39 years, male 26.9
GTEX-Y8E4-2126-SM-5RQHO 40-49 years, male 26.7
GTEX-OOBK-2025-SM-3LK5S 40-49 years, male 25.8
GTEX-OOBJ-2026-SM-3NB1R 60-69 years, male 25.7
GTEX-XPVG-2026-SM-4B65E 50-59 years, male 25.3
GTEX-12BJ1-1226-SM-5LUAE 60-69 years, male 24.9
GTEX-13O21-1126-SM-5N9EV 50-59 years, male 24.9
GTEX-U3ZM-0926-SM-4DXSW 40-49 years, male 24.9
GTEX-ZVP2-0826-SM-59HJ6 50-59 years, male 24.5
GTEX-11P82-1126-SM-5BC5K 20-29 years, male 23.8
GTEX-11TT1-2026-SM-5EQM8 20-29 years, male 23.8
GTEX-U412-2026-SM-4DXSI 60-69 years, male 23.3
GTEX-13O61-1726-SM-5KM46 60-69 years, male 23.0
GTEX-X5EB-1826-SM-4E3K8 40-49 years, male 23.0
GTEX-S4Q7-1026-SM-4AD75 20-29 years, male 22.9
GTEX-VJYA-1226-SM-3GIJ6 60-69 years, male 22.8
GTEX-ZT9W-1626-SM-4YCDQ 50-59 years, male 22.7
GTEX-WH7G-1726-SM-4LVKY 40-49 years, male 22.5
GTEX-ZTX8-1026-SM-5EGHD 20-29 years, male 22.5
GTEX-145LV-1226-SM-5S2QH 50-59 years, male 22.4
GTEX-132QS-1126-SM-5P9GC 60-69 years, male 22.3
GTEX-S3XE-1326-SM-4AD4H 50-59 years, male 22.2
GTEX-ZDYS-1226-SM-5IJF3 50-59 years, male 22.2
GTEX-XGQ4-1826-SM-4AT6F 50-59 years, male 22.1
GTEX-PLZ6-1126-SM-3P5ZR 30-39 years, male 21.9
GTEX-WFON-1626-SM-4LVMV 40-49 years, male 21.7
GTEX-117YX-1526-SM-5H12T 50-59 years, male 21.6
GTEX-QLQ7-1326-SM-4R1JY 60-69 years, male 21.5
GTEX-YF7O-1926-SM-4W1YQ 50-59 years, male 21.5
GTEX-11TUW-2126-SM-5GU7B 60-69 years, male 20.9
GTEX-WFG7-1826-SM-3GIL1 20-29 years, male 20.7
GTEX-YB5E-1826-SM-5IFI4 40-49 years, male 20.4
GTEX-1399R-0526-SM-5IJEF 30-39 years, male 20.2
GTEX-U4B1-1426-SM-4DXTX 40-49 years, male 20.2
GTEX-14C5O-2826-SM-5RQI6 60-69 years, male 20.1
GTEX-WFG8-1826-SM-4LVM4 20-29 years, male 19.7
GTEX-Q2AI-1126-SM-48U19 40-49 years, male 19.6
GTEX-XOTO-2826-SM-4B65I 50-59 years, male 19.5
GTEX-ZY6K-1526-SM-5GZXE 50-59 years, male 19.5
GTEX-111YS-1726-SM-5GIED 60-69 years, male 19.1
GTEX-117YW-1426-SM-5EGGO 50-59 years, male 18.9
GTEX-12C56-1326-SM-5FQSV 20-29 years, male 18.8
GTEX-SNMC-0926-SM-4DM5U 20-29 years, male 18.6
GTEX-V1D1-1926-SM-4JBGX 50-59 years, male 18.4
GTEX-11DYG-2526-SM-5N9BB 60-69 years, male 18.3
GTEX-WK11-2626-SM-4OOSK 50-59 years, male 18.3
GTEX-QMRM-1426-SM-4R1K8 50-59 years, male 18.1
GTEX-1399T-1226-SM-5P9J5 60-69 years, male 18.0
GTEX-RM2N-1126-SM-48FCY 50-59 years, male 18.0
GTEX-12696-2226-SM-5EQ65 60-69 years, male 17.9
GTEX-144GM-0826-SM-5O98R 20-29 years, male 17.9
GTEX-QEG4-2226-SM-4R1JM 30-39 years, male 17.9
GTEX-Y9LG-1826-SM-4VBQC 30-39 years, male 17.9
GTEX-REY6-2126-SM-48FD9 60-69 years, male 17.7
GTEX-XAJ8-0626-SM-47JY4 40-49 years, male 17.7
GTEX-11NSD-0826-SM-5986S 20-29 years, male 17.6
GTEX-QV44-1526-SM-4R1KI 50-59 years, male 17.5
GTEX-131XF-1926-SM-5DUW4 60-69 years, male 17.4
GTEX-146FQ-1726-SM-5QGPX 30-39 years, male 17.3
GTEX-WOFM-0326-SM-4OOSL 20-29 years, male 17.1
GTEX-ZLFU-1726-SM-4WWBU 40-49 years, male 17.0
GTEX-S95S-1026-SM-4B64M 60-69 years, male 16.9
GTEX-SJXC-2026-SM-4DM6N 60-69 years, male 16.9
GTEX-139T6-1526-SM-5P9G6 50-59 years, male 16.8
GTEX-111CU-1526-SM-5N9FS 50-59 years, male 16.7
GTEX-ZTTD-2726-SM-57WFA 50-59 years, male 16.6
GTEX-13FXS-2826-SM-5LZYC 50-59 years, male 16.4
GTEX-WZTO-0926-SM-4PQZ3 40-49 years, male 16.0
GTEX-OIZH-2026-SM-3NB1M 50-59 years, male 15.8
GTEX-U8XE-2526-SM-4E3IT 30-39 years, male 15.7
GTEX-XQ3S-2526-SM-4BOOG 20-29 years, male 15.7
GTEX-V955-1826-SM-4JBIL 60-69 years, male 15.6
GTEX-YJ8A-1126-SM-5IFJU 20-29 years, male 15.6
GTEX-13FHO-2826-SM-5K7ZA 60-69 years, male 15.1
GTEX-14BMV-2326-SM-5RQJ4 50-59 years, male 14.7
GTEX-13RTJ-2126-SM-5S2PZ 60-69 years, male 14.5
GTEX-S33H-1826-SM-4AD65 30-39 years, male 14.5
GTEX-111FC-2026-SM-5GZYO 60-69 years, male 14.4
GTEX-RWSA-2026-SM-47JX8 40-49 years, male 14.4
GTEX-13OW8-0426-SM-5J2NR 60-69 years, male 14.2
GTEX-13NYS-1026-SM-5KLZT 60-69 years, male 13.5
GTEX-ZZ64-0926-SM-5E44L 20-29 years, male 13.5
GTEX-132NY-2826-SM-5P9G2 60-69 years, male 13.3
GTEX-11WQK-2726-SM-5EQMU 50-59 years, male 13.0
GTEX-NFK9-2226-SM-3MJGP 40-49 years, male 13.0
GTEX-13N2G-1826-SM-5KM1I 60-69 years, male 12.9
GTEX-145LT-0626-SM-5O99E 40-49 years, male 12.9
GTEX-14ABY-0726-SM-5Q5DF 50-59 years, male 12.8
GTEX-148VJ-1826-SM-5Q5DV 70-79 years, male 12.7
GTEX-NPJ8-2426-SM-3MJHL 40-49 years, male 12.6
GTEX-12ZZZ-2026-SM-5LZWJ 60-69 years, male 12.5
GTEX-ZUA1-2826-SM-59HLE 40-49 years, male 12.4
GTEX-11ZUS-2126-SM-5N9E6 30-39 years, male 11.8
GTEX-T8EM-1826-SM-4DM7F 40-49 years, male 11.6
GTEX-13G51-2326-SM-5LZXV 60-69 years, male 11.4
GTEX-11O72-2726-SM-5HL6K 40-49 years, male 11.2
GTEX-UTHO-2726-SM-4JBH9 60-69 years, male 10.3
GTEX-11OF3-1726-SM-5GU5Q 60-69 years, male 9.0
Show all

PROSTATE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

46.4

FANTOM5 sample id

Sample description

Tags Per Million

Prostate
Tags Per Million: 46.4
FF:10022-101D4 73,79,93 years, male 46.4

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