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TISSUE ATLAS PRIMARY DATA BREAST

GENE/PROTEIN

Antibody validation


Dictionary

Breast

BREAST - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:2.8TPM
GTEx:7.6RPKM
FANTOM5:13.2Tags Per Million

BREAST - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Adipocytes:Not detected
Glandular cells:Medium
Myoepithelial cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA042886

 

Adipocytes

Not detected  

Glandular cells

Medium  

Myoepithelial cells

Medium  
 
 

BREAST - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

2.8

overview Female, age 52 Sample 1
TPM: 4.3
Cell types%
Glandular cells: 15
Adipocytes: 5
Other cell types: 80
overview Female, age 80 Sample 2
TPM: 2.7
Cell types%
Glandular cells: 5
Adipocytes: 15
Other cell types: 80
overview Female, age 47 Sample 3
TPM: 2.7
Cell types%
Glandular cells: 5
Adipocytes: 5
Other cell types: 90
overview Female, age 38 Sample 4
TPM: 1.7
Cell types%
Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

7.6

GTEx sample id

Sample description

RPKM

Breast - Mammary Tissue
RPKM: 7.6
Samples: 214

Max RPKM: 16.8
Min RPKM: 2.8
Std RPKM: 2.5
Median RPKM: 7.3
GTEX-YFC4-1426-SM-5IFJG 40-49 years, female 16.8
GTEX-139T8-0826-SM-5L3DE 60-69 years, male 13.8
GTEX-117XS-1926-SM-5GICO 60-69 years, male 13.7
GTEX-13FTY-2226-SM-5J1ND 40-49 years, female 13.6
GTEX-11I78-2226-SM-5PNYA 50-59 years, female 13.0
GTEX-12ZZX-1126-SM-5EGKB 40-49 years, female 12.8
GTEX-13N11-1726-SM-5J1OJ 50-59 years, female 12.7
GTEX-11EMC-2026-SM-5A5JV 60-69 years, female 12.5
GTEX-ZQG8-0726-SM-5P9H9 60-69 years, female 12.3
GTEX-WY7C-2726-SM-3NB3P 50-59 years, male 12.2
GTEX-XV7Q-2326-SM-4BRVZ 40-49 years, female 12.2
GTEX-11DXZ-1926-SM-5GZZL 50-59 years, male 12.0
GTEX-R53T-1526-SM-48FEK 50-59 years, female 12.0
GTEX-X15G-1626-SM-3NMB3 50-59 years, female 11.8
GTEX-11ZTT-2326-SM-5EQLG 60-69 years, female 11.7
GTEX-13PL6-2926-SM-5L3I2 40-49 years, female 11.7
GTEX-1313W-0826-SM-5EQ4T 50-59 years, female 11.5
GTEX-U3ZN-1926-SM-4DXSG 30-39 years, female 11.2
GTEX-11GS4-2126-SM-5A5KR 60-69 years, male 11.1
GTEX-131YS-0626-SM-5EGKL 60-69 years, female 11.1
GTEX-13W3W-1226-SM-5LU4H 60-69 years, female 11.1
GTEX-WYVS-1726-SM-3NMAY 40-49 years, female 11.1
GTEX-ZLV1-1426-SM-4WWES 60-69 years, female 11.1
GTEX-Y3IK-2326-SM-4WWDT 50-59 years, female 10.9
GTEX-YB5K-1626-SM-5IFIN 40-49 years, female 10.9
GTEX-11P7K-0726-SM-5EGKX 30-39 years, male 10.8
GTEX-131XW-0726-SM-5EGK3 50-59 years, female 10.8
GTEX-ZF2S-2026-SM-5E461 50-59 years, female 10.7
GTEX-11P81-1926-SM-5BC53 30-39 years, female 10.6
GTEX-SIU7-1626-SM-4BRUK 50-59 years, male 10.6
GTEX-QVJO-1826-SM-447C9 60-69 years, female 10.5
GTEX-XUZC-1626-SM-4BRVP 30-39 years, female 10.5
GTEX-133LE-1726-SM-5K7VQ 20-29 years, female 10.4
GTEX-14E6E-1326-SM-5S2NR 30-39 years, male 10.4
GTEX-U3ZH-1426-SM-4DXSR 30-39 years, male 10.3
GTEX-ZXES-0826-SM-5E43C 30-39 years, female 10.3
GTEX-13FTX-1126-SM-5N9EN 20-29 years, female 10.2
GTEX-145MN-1926-SM-5SIAI 30-39 years, male 10.2
GTEX-ZC5H-2626-SM-5J2MG 40-49 years, female 10.2
GTEX-1269C-2426-SM-5FQSN 60-69 years, female 10.1
GTEX-T6MN-0726-SM-32PML 50-59 years, male 10.1
GTEX-13QIC-2326-SM-5LU5N 60-69 years, female 10.0
GTEX-XOT4-0726-SM-4GIAW 60-69 years, female 10.0
GTEX-Y5V5-2126-SM-4WWFO 60-69 years, female 10.0
GTEX-11PRG-0826-SM-5EQ6A 50-59 years, male 9.9
GTEX-Q2AG-0326-SM-48U1O 40-49 years, female 9.9
GTEX-T5JW-2026-SM-4DM63 20-29 years, female 9.9
GTEX-139TU-0626-SM-5KM3X 60-69 years, male 9.8
GTEX-11EI6-0626-SM-5985T 60-69 years, male 9.5
GTEX-YJ8O-2226-SM-5IFHW 40-49 years, female 9.5
GTEX-WRHU-0326-SM-3MJFY 50-59 years, female 9.4
GTEX-11DXW-0626-SM-5N9ER 40-49 years, male 9.3
GTEX-XUW1-2326-SM-4BOO5 50-59 years, female 9.3
GTEX-144GL-2026-SM-5LU3O 50-59 years, male 9.2
GTEX-YB5E-1726-SM-5IFJ3 40-49 years, male 9.2
GTEX-ZEX8-2226-SM-57WC6 50-59 years, male 9.2
GTEX-11ZUS-0826-SM-5FQUY 30-39 years, male 9.1
GTEX-13CF2-2026-SM-5K7VI 60-69 years, male 9.1
GTEX-11LCK-2426-SM-5HL5F 30-39 years, male 9.0
GTEX-13113-1726-SM-5GCOO 60-69 years, female 9.0
GTEX-R3RS-0626-SM-48FE1 40-49 years, female 9.0
GTEX-Y111-2026-SM-4SOJA 50-59 years, male 9.0
GTEX-ZUA1-1526-SM-59HLS 40-49 years, male 9.0
GTEX-11EQ9-1826-SM-5Q5AJ 30-39 years, male 8.8
GTEX-ZF29-1926-SM-5S2P1 60-69 years, female 8.8
GTEX-XUJ4-1926-SM-4BOOV 60-69 years, female 8.7
GTEX-11ONC-2126-SM-5HL6E 60-69 years, male 8.6
GTEX-T2YK-2226-SM-32QPT 50-59 years, male 8.6
GTEX-ZZPU-0626-SM-5E43T 50-59 years, female 8.6
GTEX-RWS6-1926-SM-47JXY 60-69 years, female 8.5
GTEX-S341-1526-SM-4AD6K 40-49 years, female 8.4
GTEX-UJHI-1426-SM-3DB9C 50-59 years, female 8.3
GTEX-XQ8I-2426-SM-4WAXY 50-59 years, male 8.3
GTEX-ZDTT-2126-SM-5S2OJ 60-69 years, male 8.3
GTEX-11NSD-0926-SM-5N9DR 20-29 years, male 8.2
GTEX-132NY-0826-SM-5K7Y7 60-69 years, male 8.2
GTEX-13D11-1026-SM-5IJFB 50-59 years, female 8.1
GTEX-RU72-0626-SM-46MUI 50-59 years, female 8.0
GTEX-WXYG-2226-SM-4E3IM 50-59 years, female 8.0
GTEX-XMK1-1126-SM-4IHJ8 40-49 years, male 8.0
GTEX-Y5V6-2126-SM-4WWFX 60-69 years, male 8.0
GTEX-132Q8-1426-SM-5EGK7 60-69 years, male 7.9
GTEX-13OW8-0226-SM-5K7UP 60-69 years, male 7.9
GTEX-T2IS-1526-SM-32QPR 20-29 years, female 7.9
GTEX-T5JC-2126-SM-32PMO 20-29 years, male 7.9
GTEX-T6MO-0326-SM-32QOK 40-49 years, female 7.9
GTEX-XGQ4-0926-SM-4AT4U 50-59 years, male 7.9
GTEX-XMD1-0826-SM-4AT52 60-69 years, male 7.9
GTEX-ZVT4-1026-SM-57WC4 50-59 years, female 7.9
GTEX-1122O-1226-SM-5H113 60-69 years, female 7.8
GTEX-13FTW-1426-SM-5LZWZ 40-49 years, male 7.8
GTEX-13OW5-2226-SM-5L3HC 60-69 years, male 7.8
GTEX-SE5C-2126-SM-4BRUJ 40-49 years, female 7.8
GTEX-11O72-2126-SM-5N9FO 40-49 years, male 7.7
GTEX-WYJK-1326-SM-3NB2T 50-59 years, male 7.7
GTEX-ZYT6-0126-SM-5E45J 30-39 years, male 7.7
GTEX-117YX-1426-SM-5H12H 50-59 years, male 7.6
GTEX-11EM3-1326-SM-5N9C6 20-29 years, female 7.6
GTEX-11WQC-1726-SM-5GU4W 60-69 years, male 7.6
GTEX-12WSB-0626-SM-59HJO 60-69 years, female 7.6
GTEX-QMRM-1626-SM-4R1KV 50-59 years, male 7.6
GTEX-XQ3S-1326-SM-4BOPQ 20-29 years, male 7.6
GTEX-146FH-0826-SM-5SI8T 50-59 years, female 7.5
GTEX-QDT8-0626-SM-48TYW 30-39 years, female 7.5
GTEX-WFON-1826-SM-3GILG 40-49 years, male 7.5
GTEX-12WSN-1326-SM-5GCNT 40-49 years, male 7.4
GTEX-ZDXO-0126-SM-5S2ND 60-69 years, male 7.4
GTEX-R55D-0826-SM-48FEA 50-59 years, male 7.3
GTEX-11OF3-1926-SM-59889 60-69 years, male 7.2
GTEX-UPK5-2326-SM-3P5Z8 40-49 years, male 7.2
GTEX-Y114-2026-SM-4TT7L 50-59 years, female 7.2
GTEX-ZPIC-1126-SM-5BC7F 40-49 years, female 7.2
GTEX-13O3P-0826-SM-5L3DH 50-59 years, male 7.1
GTEX-13O3Q-2226-SM-5KM4O 50-59 years, male 7.1
GTEX-ZDYS-1126-SM-5K7UB 50-59 years, male 7.1
GTEX-11GSO-1926-SM-5A5K3 60-69 years, male 7.0
GTEX-145LT-0726-SM-5S2VM 40-49 years, male 7.0
GTEX-S4UY-0726-SM-4AD6X 40-49 years, female 7.0
GTEX-TML8-1226-SM-32QON 40-49 years, female 7.0
GTEX-ZVE2-1226-SM-5NQ8R 50-59 years, male 7.0
GTEX-1192X-2326-SM-5987X 50-59 years, male 6.9
GTEX-1314G-1226-SM-5BC6D 30-39 years, male 6.9
GTEX-S4Q7-1126-SM-4AD6R 20-29 years, male 6.9
GTEX-ZYFC-0826-SM-5E44K 50-59 years, male 6.9
GTEX-11P82-1326-SM-5HL62 20-29 years, male 6.8
GTEX-132AR-0826-SM-5EGK6 50-59 years, female 6.8
GTEX-1399U-1826-SM-5PNZ1 50-59 years, female 6.8
GTEX-WYBS-0926-SM-3NM94 60-69 years, female 6.8
GTEX-111YS-1926-SM-5GICC 60-69 years, male 6.6
GTEX-13NZ8-0126-SM-5IJCT 60-69 years, female 6.6
GTEX-X4EP-2926-SM-3P5YQ 60-69 years, female 6.6
GTEX-XBED-1626-SM-47JYN 60-69 years, male 6.6
GTEX-Y8LW-1626-SM-5IFHX 50-59 years, female 6.6
GTEX-ZAJG-0626-SM-5HL8X 50-59 years, female 6.6
GTEX-ZVT2-1826-SM-5NQ8W 50-59 years, female 6.6
GTEX-ZY6K-1626-SM-5GZWV 50-59 years, male 6.6
GTEX-13CF3-2126-SM-5IFJP 60-69 years, female 6.5
GTEX-144GM-0926-SM-5O994 20-29 years, male 6.5
GTEX-TKQ2-1826-SM-33HB2 50-59 years, male 6.5
GTEX-ZQUD-1926-SM-51MSA 30-39 years, male 6.5
GTEX-14AS3-1626-SM-5S2OY 40-49 years, female 6.4
GTEX-ZU9S-1926-SM-5NQBP 30-39 years, male 6.4
GTEX-1117F-2826-SM-5GZXL 60-69 years, female 6.3
GTEX-12BJ1-1826-SM-5HL9N 60-69 years, male 6.3
GTEX-13NZB-2126-SM-5MR4Y 30-39 years, male 6.3
GTEX-ZV6S-1826-SM-5NQ8D 40-49 years, female 6.3
GTEX-147F4-2826-SM-5NQBN 50-59 years, male 6.2
GTEX-S4P3-1326-SM-4AD6V 50-59 years, female 6.2
GTEX-11TT1-2126-SM-5GU5Y 20-29 years, male 6.1
GTEX-12WSK-2226-SM-5GCO5 40-49 years, female 6.1
GTEX-13FHO-0826-SM-5L3E8 60-69 years, male 6.1
GTEX-WOFL-0826-SM-3MJG1 60-69 years, male 6.1
GTEX-QEL4-2126-SM-447AE 50-59 years, male 6.0
GTEX-TMMY-0726-SM-33HBE 40-49 years, female 6.0
GTEX-XYKS-1326-SM-4BRUN 60-69 years, female 6.0
GTEX-Y3I4-1526-SM-4TT7K 50-59 years, male 6.0
GTEX-ZV7C-1826-SM-5NQ83 50-59 years, male 6.0
GTEX-13N1W-0626-SM-5MR4U 70-79 years, male 5.9
GTEX-13NZ9-1026-SM-5MR5K 50-59 years, male 5.9
GTEX-S7SE-0826-SM-4AT4D 50-59 years, male 5.9
GTEX-YEC3-1026-SM-5IFI5 50-59 years, male 5.9
GTEX-ZVZQ-0826-SM-51MRF 60-69 years, female 5.9
GTEX-11NV4-2026-SM-5N9DG 60-69 years, male 5.8
GTEX-VUSG-2226-SM-4KKZO 50-59 years, male 5.8
GTEX-WI4N-1426-SM-3LK7H 40-49 years, female 5.8
GTEX-ZAB4-2526-SM-5HL8M 40-49 years, male 5.8
GTEX-YFCO-1826-SM-4W1YH 40-49 years, male 5.7
GTEX-ZF3C-2326-SM-5S2MZ 50-59 years, female 5.7
GTEX-Y8E4-1626-SM-5S2MW 40-49 years, male 5.6
GTEX-ZZ64-1226-SM-5E43R 20-29 years, male 5.5
GTEX-145MO-0826-SM-5NQBL 60-69 years, male 5.4
GTEX-ZVTK-0326-SM-51MRR 20-29 years, male 5.4
GTEX-U412-1826-SM-4DXTJ 60-69 years, male 5.3
GTEX-1211K-1926-SM-5EQLB 60-69 years, female 5.2
GTEX-145ME-1526-SM-5Q5F2 40-49 years, female 5.2
GTEX-S32W-2026-SM-4AD6E 50-59 years, female 5.2
GTEX-ZWKS-2826-SM-5NQ74 30-39 years, male 5.2
GTEX-11DZ1-0326-SM-5N9BN 50-59 years, male 5.1
GTEX-14ABY-2126-SM-5QGQZ 50-59 years, male 5.1
GTEX-PSDG-1626-SM-48TCQ 50-59 years, male 5.1
GTEX-ZYWO-2326-SM-5GZY4 40-49 years, female 5.1
GTEX-S33H-0326-SM-4AD6N 30-39 years, male 4.9
GTEX-11DXY-2326-SM-5GICW 60-69 years, male 4.8
GTEX-12WSM-1726-SM-5BC6J 60-69 years, male 4.8
GTEX-XMD2-0926-SM-4WWEF 60-69 years, female 4.8
GTEX-11TUW-1826-SM-5BC5D 60-69 years, male 4.7
GTEX-R55F-1726-SM-2TF4R 50-59 years, male 4.7
GTEX-12KS4-0126-SM-5Q5A5 30-39 years, male 4.6
GTEX-13O61-1826-SM-5KM4I 60-69 years, male 4.6
GTEX-13S86-1226-SM-5S2OA 40-49 years, male 4.6
GTEX-REY6-2426-SM-48FF5 60-69 years, male 4.6
GTEX-W5X1-2326-SM-3GIL6 40-49 years, female 4.6
GTEX-ZYW4-0826-SM-5GIDG 60-69 years, male 4.6
GTEX-13PVQ-1026-SM-5KM3M 50-59 years, male 4.4
GTEX-ZTX8-1226-SM-4YCE9 20-29 years, male 4.3
GTEX-139T6-1626-SM-5PNYZ 50-59 years, male 4.2
GTEX-RUSQ-2026-SM-4GIAK 50-59 years, male 4.2
GTEX-13O3O-0826-SM-5K7WE 60-69 years, female 4.0
GTEX-13W46-0826-SM-5LU3H 50-59 years, male 3.9
GTEX-U8XE-0826-SM-4E3J1 30-39 years, male 3.9
GTEX-Y5LM-1726-SM-4VDSX 40-49 years, female 3.9
GTEX-VJWN-0726-SM-3GIJ8 50-59 years, female 3.7
GTEX-QEG5-0726-SM-4R1JQ 20-29 years, male 3.5
GTEX-ZTTD-1026-SM-51MRD 50-59 years, male 3.5
GTEX-ZA64-1526-SM-5CVMD 20-29 years, male 3.4
GTEX-TKQ1-0226-SM-33HB5 30-39 years, male 3.3
GTEX-X261-0626-SM-3NMD9 50-59 years, male 3.3
GTEX-Y9LG-1426-SM-5IFJZ 30-39 years, male 3.3
GTEX-ZLFU-2126-SM-4WWEV 40-49 years, male 3.3
GTEX-ZT9W-2026-SM-51MRA 50-59 years, male 3.3
GTEX-11WQK-2426-SM-5GU5C 50-59 years, male 3.2
GTEX-14753-2426-SM-5LU8U 60-69 years, male 3.2
GTEX-X4XY-0926-SM-4E3JD 60-69 years, male 3.2
GTEX-UTHO-1026-SM-3GAF7 60-69 years, male 2.8
Show all

BREAST - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

13.2

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 13.2
FF:10080-102A8 77 years, female 13.2

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