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TISSUE ATLAS PRIMARY DATA TESTIS

GENE/PROTEIN

Antibody validation


Dictionary

Testis

Tissue proteome

Testis

TESTIS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:5.4TPM
GTEx:6.3RPKM
FANTOM5:10.7Tags Per Million

TESTIS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in seminiferous ducts:Medium
Leydig cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA042886

 

Cells in seminiferous ducts

High  

Leydig cells

Medium  
 
 
 

TESTIS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

5.4

overview Male, age 56 Sample 1
TPM: 5.9
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34 Sample 2
TPM: 9.2
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25
overview Male, age 62 Sample 3
TPM: 8.5
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 34 Sample 4
TPM: 9.4
Cell types%
Cells in seminiferous ducts: 60
Other cell types: 40
overview Male, age 26 Sample 5
TPM: 5.2
Cell types%
Cells in seminiferous ducts: 55
Other cell types: 45
overview Male, age 50 Sample 6
TPM: 7.1
Cell types%
Cells in seminiferous ducts: 85
Other cell types: 15
overview Male, age 37 Sample 7
TPM: 5.5
Cell types%
Cells in seminiferous ducts: 35
Other cell types: 65
overview Male, age 51 Sample 8
TPM: 0.1
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34 Sample 9
TPM: 2.6
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 26 Sample 10
TPM: 0.9
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25

TESTIS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

6.3

GTEx sample id

Sample description

RPKM

Testis
RPKM: 6.3
Samples: 172

Max RPKM: 12.4
Min RPKM: 3.2
Std RPKM: 1.7
Median RPKM: 5.9
GTEX-NFK9-0126-SM-3LK5H 40-49 years, male 12.4
GTEX-X261-2326-SM-4PQYU 50-59 years, male 11.7
GTEX-147F4-0626-SM-5LUAK 50-59 years, male 11.6
GTEX-T5JC-0726-SM-4DM55 20-29 years, male 11.1
GTEX-WFON-2026-SM-4LVMW 40-49 years, male 10.7
GTEX-ZAB4-0126-SM-5CVMG 40-49 years, male 10.5
GTEX-14A6H-2326-SM-5Q5B5 30-39 years, male 10.3
GTEX-XPVG-2226-SM-4B65U 50-59 years, male 9.6
GTEX-13NYB-2226-SM-5MR58 40-49 years, male 9.4
GTEX-RN64-2326-SM-48FDW 50-59 years, male 9.4
GTEX-U3ZH-1526-SM-4DXV1 30-39 years, male 9.4
GTEX-1399Q-2826-SM-5IJEZ 40-49 years, male 9.3
GTEX-WOFM-1126-SM-4OOSB 20-29 years, male 9.1
GTEX-11P7K-1026-SM-5HL6Y 30-39 years, male 8.9
GTEX-13O21-1226-SM-5J2MK 50-59 years, male 8.9
GTEX-WVLH-2626-SM-4MVNV 50-59 years, male 8.9
GTEX-YJ89-0626-SM-4TT3Z 60-69 years, male 8.9
GTEX-QLQ7-1426-SM-4R1JX 60-69 years, male 8.8
GTEX-11WQK-2826-SM-5EQKH 50-59 years, male 8.7
GTEX-13OW6-0126-SM-5IJGM 50-59 years, male 8.6
GTEX-ZT9X-1426-SM-5DUX1 40-49 years, male 8.6
GTEX-P4QR-0226-SM-3NMCH 60-69 years, male 8.5
GTEX-QV44-1726-SM-4R1KG 50-59 years, male 8.4
GTEX-QLQW-1026-SM-447A9 30-39 years, male 8.3
GTEX-VJYA-1426-SM-4KL1Y 60-69 years, male 8.2
GTEX-XGQ4-2026-SM-4AT6G 50-59 years, male 8.0
GTEX-11ONC-2226-SM-5HL6D 60-69 years, male 7.9
GTEX-RWSA-2426-SM-47JXR 40-49 years, male 7.9
GTEX-SNMC-1026-SM-4DM7K 20-29 years, male 7.9
GTEX-1399R-1626-SM-5P9GG 30-39 years, male 7.8
GTEX-13NZA-2526-SM-5IJFX 60-69 years, male 7.8
GTEX-13OVH-0726-SM-5N9BU 70-79 years, male 7.8
GTEX-XPT6-1626-SM-4B655 20-29 years, male 7.8
GTEX-OIZI-0126-SM-3NB13 40-49 years, male 7.7
GTEX-S33H-0126-SM-4AD62 30-39 years, male 7.7
GTEX-U8T8-1126-SM-4DXUE 60-69 years, male 7.7
GTEX-ZUA1-2726-SM-59HLJ 40-49 years, male 7.6
GTEX-13N2G-0126-SM-5N9DV 60-69 years, male 7.5
GTEX-R55D-0126-SM-48FEL 50-59 years, male 7.5
GTEX-ZDTT-2026-SM-5K7TY 60-69 years, male 7.5
GTEX-145LT-0426-SM-5LUAP 40-49 years, male 7.4
GTEX-T8EM-0126-SM-4DM5R 40-49 years, male 7.4
GTEX-YB5E-1926-SM-5IFIG 40-49 years, male 7.4
GTEX-S7SE-0326-SM-4AT5Q 50-59 years, male 7.3
GTEX-UPJH-0126-SM-4IHLL 50-59 years, male 7.3
GTEX-XQ3S-2726-SM-4BOP2 20-29 years, male 7.3
GTEX-13111-1526-SM-5EGJX 50-59 years, male 7.2
GTEX-13FTW-1326-SM-5LZZD 40-49 years, male 7.2
GTEX-OOBJ-2126-SM-3NB1N 60-69 years, male 7.2
GTEX-XBED-2026-SM-4AT5D 60-69 years, male 7.2
GTEX-11NSD-1026-SM-5N9BE 20-29 years, male 7.1
GTEX-QMRM-1526-SM-4R1K6 50-59 years, male 7.1
GTEX-ZYFC-0126-SM-5GIEH 50-59 years, male 7.0
GTEX-12WSM-1326-SM-5GCP9 60-69 years, male 6.9
GTEX-V955-1926-SM-4KL1L 60-69 years, male 6.9
GTEX-X3Y1-2626-SM-4PQZI 40-49 years, male 6.9
GTEX-XMK1-2026-SM-4B65K 40-49 years, male 6.9
GTEX-WZTO-0326-SM-4PQYZ 40-49 years, male 6.7
GTEX-12696-0226-SM-5EGL3 60-69 years, male 6.6
GTEX-R55E-0726-SM-48FCZ 20-29 years, male 6.6
GTEX-WFG8-1926-SM-4LVM1 20-29 years, male 6.6
GTEX-111FC-1926-SM-5GZYC 60-69 years, male 6.5
GTEX-13OW5-2526-SM-5L3I1 60-69 years, male 6.5
GTEX-14753-0626-SM-5Q5CY 60-69 years, male 6.5
GTEX-147JS-0126-SM-5S2TW 60-69 years, male 6.4
GTEX-R55C-1426-SM-48FED 40-49 years, male 6.4
GTEX-S3XE-1526-SM-4AD5A 50-59 years, male 6.4
GTEX-Q2AH-1526-SM-48TZG 40-49 years, male 6.3
GTEX-U4B1-1526-SM-4DXSL 40-49 years, male 6.3
GTEX-WH7G-1926-SM-4LVMM 40-49 years, male 6.3
GTEX-XAJ8-1326-SM-47JYT 40-49 years, male 6.3
GTEX-Z93S-1726-SM-5HL8G 50-59 years, male 6.3
GTEX-ZA64-1626-SM-5CVME 20-29 years, male 6.3
GTEX-13O1R-0726-SM-5IJEI 60-69 years, male 6.2
GTEX-RM2N-1326-SM-48FCW 50-59 years, male 6.2
GTEX-ZVTK-0126-SM-57WDG 20-29 years, male 6.2
GTEX-111YS-2026-SM-5EGGL 60-69 years, male 6.1
GTEX-11O72-0726-SM-5P9GO 40-49 years, male 6.1
GTEX-Y9LG-1726-SM-4VBQE 30-39 years, male 6.1
GTEX-13NZB-2026-SM-5MR4M 30-39 years, male 6.0
GTEX-13O61-2026-SM-5J2M6 60-69 years, male 6.0
GTEX-S4Q7-1226-SM-4AD5I 20-29 years, male 6.0
GTEX-TKQ2-1526-SM-4DXUN 50-59 years, male 6.0
GTEX-V1D1-2126-SM-4JBH4 50-59 years, male 6.0
GTEX-YF7O-2026-SM-4W1YE 50-59 years, male 6.0
GTEX-12C56-1426-SM-5FQSW 20-29 years, male 5.9
GTEX-131XE-0426-SM-5IJF4 50-59 years, male 5.9
GTEX-144GL-0726-SM-5LU4P 50-59 years, male 5.9
GTEX-XLM4-1526-SM-4AT6D 60-69 years, male 5.9
GTEX-11GS4-2026-SM-5N9CP 60-69 years, male 5.8
GTEX-12WSL-2326-SM-5DUXQ 50-59 years, male 5.8
GTEX-O5YT-2126-SM-3MJGD 20-29 years, male 5.8
GTEX-P4QS-2126-SM-3NMCF 60-69 years, male 5.8
GTEX-PW2O-1426-SM-48TCD 20-29 years, male 5.8
GTEX-REY6-0126-SM-48FDT 60-69 years, male 5.8
GTEX-TKQ1-0926-SM-4DXU2 30-39 years, male 5.8
GTEX-ZDYS-1326-SM-5IJFF 50-59 years, male 5.8
GTEX-11NUK-2626-SM-5A5MB 50-59 years, male 5.7
GTEX-144GN-1626-SM-5Q5BU 50-59 years, male 5.7
GTEX-145MH-2326-SM-5O9AW 50-59 years, male 5.7
GTEX-PLZ5-1526-SM-3P5ZX 50-59 years, male 5.7
GTEX-QV31-1126-SM-4R1K4 30-39 years, male 5.7
GTEX-SUCS-1326-SM-4DM5T 70-79 years, male 5.7
GTEX-U3ZM-1626-SM-4DXSK 40-49 years, male 5.7
GTEX-11EI6-2226-SM-5EGJM 60-69 years, male 5.6
GTEX-12WSI-2126-SM-5GCMV 50-59 years, male 5.6
GTEX-Y8E4-2226-SM-5LU94 40-49 years, male 5.6
GTEX-11TUW-2226-SM-5EQL9 60-69 years, male 5.5
GTEX-S7PM-0626-SM-4AD4Q 60-69 years, male 5.5
GTEX-XBEC-0126-SM-4GIDT 50-59 years, male 5.5
GTEX-13FLW-2126-SM-5N9FD 50-59 years, male 5.4
GTEX-YEC3-1726-SM-5IFIK 50-59 years, male 5.4
GTEX-11DXZ-2126-SM-59881 50-59 years, male 5.3
GTEX-11LCK-2326-SM-5HL53 30-39 years, male 5.3
GTEX-11OF3-1826-SM-5987N 60-69 years, male 5.3
GTEX-145MO-0126-SM-5S2QU 60-69 years, male 5.3
GTEX-OIZH-2126-SM-3NB1P 50-59 years, male 5.3
GTEX-QEG4-0126-SM-48TZE 30-39 years, male 5.3
GTEX-Y5V6-1726-SM-4VDSZ 60-69 years, male 5.3
GTEX-ZV7C-2026-SM-5NQ8F 50-59 years, male 5.3
GTEX-12ZZY-0126-SM-5LZV2 60-69 years, male 5.2
GTEX-OHPM-2126-SM-3LK75 50-59 years, male 5.2
GTEX-117XS-2026-SM-5GID1 60-69 years, male 5.1
GTEX-139TT-2226-SM-5LZWO 60-69 years, male 5.1
GTEX-13VXU-0726-SM-5J2O7 50-59 years, male 5.1
GTEX-S95S-1126-SM-4B64E 60-69 years, male 5.1
GTEX-111CU-1726-SM-5EGHM 50-59 years, male 5.0
GTEX-X5EB-2026-SM-4E3KA 40-49 years, male 5.0
GTEX-1339X-1926-SM-5PNVP 40-49 years, male 4.9
GTEX-OOBK-2126-SM-3LK5T 40-49 years, male 4.9
GTEX-ZT9W-2226-SM-57WFU 50-59 years, male 4.9
GTEX-ZZ64-1126-SM-5GZXY 20-29 years, male 4.9
GTEX-11TT1-2226-SM-5GU6B 20-29 years, male 4.8
GTEX-13N1W-2626-SM-5IJEP 70-79 years, male 4.8
GTEX-Q2AI-1226-SM-48U14 40-49 years, male 4.8
GTEX-WHSB-2126-SM-4M1XF 50-59 years, male 4.8
GTEX-ZPU1-2126-SM-57WED 40-49 years, male 4.8
GTEX-111VG-1926-SM-5GIDO 60-69 years, male 4.7
GTEX-144GM-0426-SM-5Q5C8 20-29 years, male 4.7
GTEX-N7MS-0126-SM-3TW8O 60-69 years, male 4.7
GTEX-SNOS-1126-SM-4DM67 40-49 years, male 4.7
GTEX-T6MN-2026-SM-4DM7L 50-59 years, male 4.7
GTEX-ZQUD-2026-SM-51MSM 30-39 years, male 4.7
GTEX-ZTX8-1126-SM-51MRM 20-29 years, male 4.7
GTEX-ZYT6-2726-SM-5GICP 30-39 years, male 4.7
GTEX-1212Z-0326-SM-5FQSJ 60-69 years, male 4.6
GTEX-12WSH-0326-SM-5GCNH 50-59 years, male 4.6
GTEX-ZAB5-2426-SM-5CVMW 50-59 years, male 4.6
GTEX-ZVZP-2226-SM-57WBF 50-59 years, male 4.6
GTEX-11EQ8-1426-SM-5EGJR 60-69 years, male 4.5
GTEX-11P82-1526-SM-5BC5M 20-29 years, male 4.5
GTEX-139T6-1226-SM-5IFFC 50-59 years, male 4.5
GTEX-139TS-1726-SM-5IJG5 60-69 years, male 4.5
GTEX-117YW-1526-SM-5EGGP 50-59 years, male 4.4
GTEX-11NV4-1726-SM-5N9FC 60-69 years, male 4.4
GTEX-132QS-1226-SM-5P9GD 60-69 years, male 4.4
GTEX-14ABY-0626-SM-5Q5C9 50-59 years, male 4.4
GTEX-QEG5-0126-SM-4R1JR 20-29 years, male 4.4
GTEX-WK11-0326-SM-4OOS6 50-59 years, male 4.4
GTEX-OXRL-2126-SM-3NM98 50-59 years, male 4.3
GTEX-YEC4-1526-SM-4W1YU 40-49 years, male 4.3
GTEX-YFCO-1726-SM-4W21S 40-49 years, male 4.3
GTEX-13112-0226-SM-5P9IV 50-59 years, male 4.2
GTEX-U8XE-0126-SM-4E3I3 30-39 years, male 4.2
GTEX-Y111-2426-SM-4TT23 50-59 years, male 4.2
GTEX-13OVL-0426-SM-5IFG6 50-59 years, male 4.1
GTEX-11EQ9-1926-SM-5PNVV 30-39 years, male 3.9
GTEX-11ZUS-2726-SM-5FQUA 30-39 years, male 3.7
GTEX-ZTSS-1526-SM-51MTC 40-49 years, male 3.7
GTEX-RUSQ-2126-SM-47JXK 50-59 years, male 3.5
GTEX-13FHP-2826-SM-5IJFW 50-59 years, male 3.3
GTEX-11WQC-2326-SM-5EQKE 60-69 years, male 3.2
Show all

TESTIS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

10.7

FANTOM5 sample id

Sample description

Tags Per Million

Testis
Tags Per Million: 10.7
FF:10096-102C6 14-64 years, male 10.8
FF:10026-101D8 34,53,86 years, male 10.7

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