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TISSUE ATLAS PRIMARY DATA SALIVARY GLAND

GENE/PROTEIN

Antibody validation


Dictionary

Salivary gland

Tissue proteome

Salivary gland

SALIVARY GLAND - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:1.7TPM
GTEx:10.1RPKM
FANTOM5:6.2Tags Per Million

SALIVARY GLAND - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA048483

 

Antibody CAB037136

 

Glandular cells

Low   Medium  
   
   
   

SALIVARY GLAND - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

1.7

overview Female, age 68 Sample 1
TPM: 4.1
Cell types%
Glandular cells: 45
Ductal cells: 25
Adipocytes: 5
Other cell types: 25
overview Male, age 60 Sample 2
TPM: 0.7
Cell types%
Glandular cells: 55
Ductal cells: 20
Adipocytes: 5
Endothelial cells: 5
Other cell types: 15
overview Female, age 21 Sample 3
TPM: 0.2
Cell types%
Glandular cells: 55
Ductal cells: 15
Adipocytes: 5
Endothelial cells: 5
Other cell types: 20

SALIVARY GLAND - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

10.1

GTEx sample id

Sample description

RPKM

Minor Salivary Gland
RPKM: 10.1
Samples: 57

Max RPKM: 34.2
Min RPKM: 1.1
Std RPKM: 7.0
Median RPKM: 9.0
GTEX-12WSL-2126-SM-5GCNG 50-59 years, male 34.2
GTEX-13OVI-2326-SM-5KM47 60-69 years, female 26.3
GTEX-ZA64-1726-SM-5CVMF 20-29 years, male 21.5
GTEX-YB5K-1726-SM-5IFIZ 40-49 years, female 21.0
GTEX-X261-2426-SM-4PQZU 50-59 years, male 20.1
GTEX-ZQUD-2126-SM-51MSY 30-39 years, male 19.9
GTEX-Y5V6-2226-SM-4VDTC 60-69 years, male 19.1
GTEX-13113-1526-SM-5EGHV 60-69 years, female 18.7
GTEX-1339X-2326-SM-5HL5B 40-49 years, male 17.8
GTEX-11EQ9-2026-SM-5P9JI 30-39 years, male 16.6
GTEX-13QJC-2326-SM-5Q5CD 60-69 years, female 16.5
GTEX-11ZTT-2226-SM-5CVLP 60-69 years, female 15.5
GTEX-13O21-1926-SM-5MR39 50-59 years, male 15.4
GTEX-WOFM-2126-SM-4OOSR 20-29 years, male 15.4
GTEX-145ME-1626-SM-5RQI3 40-49 years, female 14.8
GTEX-XGQ4-2626-SM-4AT6B 50-59 years, male 14.7
GTEX-131XF-2826-SM-5EGKH 60-69 years, male 13.3
GTEX-12WSM-1826-SM-5BC64 60-69 years, male 13.0
GTEX-X15G-2126-SM-4PQZR 50-59 years, female 13.0
GTEX-WFJO-2026-SM-4LVM3 30-39 years, male 12.7
GTEX-ZXG5-2826-SM-5NQ8T 60-69 years, male 12.6
GTEX-1117F-3026-SM-5GZYU 60-69 years, female 12.2
GTEX-13JVG-2926-SM-5J2N9 60-69 years, male 11.9
GTEX-YF7O-2226-SM-5CVN8 50-59 years, male 11.4
GTEX-Y3I4-1926-SM-4TT8L 50-59 years, male 10.5
GTEX-X3Y1-1926-SM-4PQZO 40-49 years, male 10.0
GTEX-14B4R-1426-SM-5Q5CG 30-39 years, male 9.6
GTEX-146FR-1226-SM-5SIA7 60-69 years, female 9.1
GTEX-12WSN-2226-SM-5DUXT 40-49 years, male 9.0
GTEX-11WQK-2926-SM-5EQKT 50-59 years, male 8.6
GTEX-Y5LM-1826-SM-4VDT9 40-49 years, female 7.6
GTEX-13VXT-1726-SM-5IFF5 20-29 years, female 7.3
GTEX-ZP4G-1926-SM-57WDZ 20-29 years, female 7.3
GTEX-1314G-2026-SM-5LZUM 30-39 years, male 7.1
GTEX-11P81-2026-SM-5P9GT 30-39 years, female 6.4
GTEX-ZT9W-2126-SM-51MSF 50-59 years, male 6.3
GTEX-XMK1-2626-SM-4B65R 40-49 years, male 6.1
GTEX-11TUW-2426-SM-5EQKB 60-69 years, male 6.0
GTEX-1445S-2926-SM-5O993 60-69 years, male 5.9
GTEX-13111-2326-SM-5LZUQ 50-59 years, male 5.5
GTEX-11P82-0926-SM-5986X 20-29 years, male 5.3
GTEX-X5EB-1726-SM-4E3J7 40-49 years, male 4.8
GTEX-ZQG8-2126-SM-4YCF1 60-69 years, female 4.2
GTEX-13NYB-2426-SM-5IFF4 40-49 years, male 3.5
GTEX-11NV4-1926-SM-5N9D4 60-69 years, male 3.2
GTEX-WYVS-2026-SM-4RGNS 40-49 years, female 3.2
GTEX-XV7Q-2426-SM-4BRV8 40-49 years, female 2.8
GTEX-111FC-2926-SM-5GZY7 60-69 years, male 2.5
GTEX-11ZTS-3026-SM-5EQM7 60-69 years, female 2.3
GTEX-ZPU1-2326-SM-57WEP 40-49 years, male 2.3
GTEX-Y111-2626-SM-4TT24 50-59 years, male 2.2
GTEX-ZE7O-2926-SM-51MSG 50-59 years, female 2.2
GTEX-13NYC-2626-SM-5K7VN 60-69 years, male 2.0
GTEX-ZC5H-2726-SM-5KLZW 40-49 years, female 1.5
GTEX-13CF2-2426-SM-5LZYL 60-69 years, male 1.3
GTEX-13G51-2426-SM-5LZY8 60-69 years, male 1.3
GTEX-13OVL-2926-SM-5IFG3 50-59 years, male 1.1
Show all

SALIVARY GLAND - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

6.2

FANTOM5 sample id

Sample description

Tags Per Million

Salivary gland
Tags Per Million: 6.2
FF:10093-102C3 16-60 years, mixed 6.2

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