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TISSUE ATLAS PRIMARY DATA SMALL INTESTINE

GENE/PROTEIN

Antibody validation


Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:81.0TPM
GTEx:12.3RPKM
FANTOM5:165.1Tags Per Million

SMALL INTESTINE - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA048113

 

Glandular cells

Low  
 
 

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

81.0

overview Male, age 65 Sample 1
TPM: 77
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39 Sample 2
TPM: 79.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68 Sample 3
TPM: 77.9
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85 Sample 4
TPM: 89.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

12.3

GTEx sample id

Sample description

RPKM

Small Intestine - Terminal Ileum
RPKM: 12.3
Samples: 88

Max RPKM: 29.7
Min RPKM: 0.1
Std RPKM: 7.6
Median RPKM: 11.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 29.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 25.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 24.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 24.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 23.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 23.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 23.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 23.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 22.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 22.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 22.7
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 22.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 21.6
GTEX-ZYWO-1526-SM-5SIAL 40-49 years, female 21.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 21.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 20.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 20.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 20.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 19.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 19.5
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 19.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 18.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 18.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 18.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 18.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 18.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 18.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 17.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 17.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 16.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 16.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 16.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 16.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 16.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 15.5
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 14.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 13.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 13.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 12.3
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 12.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 12.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 11.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 11.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 11.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 11.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 11.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 10.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 10.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 10.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 10.2
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 10.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 9.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 9.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 9.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 9.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 9.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 9.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 9.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 8.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 8.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 8.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 7.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 7.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 6.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 6.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 6.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 6.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 5.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 4.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 4.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 4.7
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 4.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 3.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 3.7
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 3.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 3.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 3.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 0.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 0.6
GTEX-13111-1426-SM-5DUW3 50-59 years, male 0.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 0.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 0.3
GTEX-1192X-2526-SM-59868 50-59 years, male 0.1
Show all

SMALL INTESTINE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

165.1

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 165.1
FF:10024-101D6 15,40,85 years, mixed 165.1

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