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TISSUE ATLAS PRIMARY DATA CEREBELLUM

GENE/PROTEIN

Antibody validation


Dictionary

Cerebellum

CEREBELLUM - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:34.9RPKM
FANTOM5:107.2Tags Per Million

CEREBELLUM - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in granular layer:Not detected
Cells in molecular layer:Not detected
Purkinje cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA052295

 

Cells in granular layer

Not detected  

Cells in molecular layer

Not detected  

Purkinje cells

Not detected  
 
 
 

CEREBELLUM - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


CEREBELLUM - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

34.9

GTEx sample id

Sample description

RPKM

Brain - Cerebellar Hemisphere
RPKM: 32.6
Samples: 105

Max RPKM: 48.9
Min RPKM: 12.0
Std RPKM: 6.6
Median RPKM: 33.3
GTEX-XMD1-0011-R11A-SM-4AT5J 60-69 years, male 48.9
GTEX-13OVJ-0011-R11a-SM-5P9H8 50-59 years, female 47.4
GTEX-NPJ8-0011-R11A-SM-2YUMS 40-49 years, male 46.7
GTEX-UTHO-0011-R11A-SM-3GIJE 60-69 years, male 43.8
GTEX-X4EP-0011-R11B-SM-4QASK 60-69 years, female 43.4
GTEX-13JVG-0011-R11a-SM-5KM53 60-69 years, male 43.1
GTEX-X261-0011-R11A-SM-4E3JY 50-59 years, male 41.8
GTEX-QDT8-0011-R11A-SM-32PKD 30-39 years, female 41.3
GTEX-13OW5-0011-R11b-SM-5L3GG 60-69 years, male 40.1
GTEX-11OF3-0011-R11a-SM-57WCR 60-69 years, male 40.0
GTEX-13OVH-0011-R11b-SM-5KM4X 70-79 years, male 39.9
GTEX-X585-0011-R11B-SM-46MUZ 50-59 years, male 39.9
GTEX-12ZZX-0011-R11a-SM-5DUVJ 40-49 years, female 39.7
GTEX-NPJ7-0011-R11A-SM-2I3E8 60-69 years, female 39.5
GTEX-Z93S-0011-R11a-SM-4RGNN 50-59 years, male 39.2
GTEX-13N2G-0011-R11a-SM-5MR3F 60-69 years, male 38.3
GTEX-T5JC-0011-R11A-SM-32PMB 20-29 years, male 38.2
GTEX-13FTY-0011-R11a-SM-5IJEA 40-49 years, female 38.1
GTEX-145MI-0011-R11a-SM-5P9JZ 60-69 years, female 38.1
GTEX-RU72-0011-R11A-SM-5SI8G 50-59 years, female 38.0
GTEX-13VXU-0011-R11b-SM-5O9DJ 50-59 years, male 37.6
GTEX-WZTO-0011-R11A-SM-4E3K9 40-49 years, male 37.5
GTEX-13O3Q-0011-R11b-SM-5KM2W 50-59 years, male 37.3
GTEX-13S7M-0011-R11b-SM-5P9HU 60-69 years, female 37.1
GTEX-14BIM-0011-R11b-SM-5S2RN 60-69 years, female 36.9
GTEX-13FHO-0011-R11b-SM-5LZYQ 60-69 years, male 36.7
GTEX-WWYW-0011-R11A-SM-3NB38 50-59 years, female 36.4
GTEX-131YS-0011-R11b-SM-5EGLM 60-69 years, female 36.3
GTEX-T6MN-0011-R11A-SM-32QOX 50-59 years, male 36.2
GTEX-12WSF-0011-R11a-SM-5LZVT 70-79 years, male 36.0
GTEX-11GSP-0011-R11b-SM-5NQ7V 60-69 years, female 35.9
GTEX-R55E-0011-R11A-SM-2TC6I 20-29 years, male 35.8
GTEX-ZAB4-0011-R11a-SM-4SOKI 40-49 years, male 35.8
GTEX-139TT-0011-R11b-SM-5LZV1 60-69 years, male 35.7
GTEX-X4XX-0011-R11A-SM-46MWQ 60-69 years, male 35.7
GTEX-12WSH-0011-R11a-SM-5LZVM 50-59 years, male 35.5
GTEX-13FHP-0011-R11b-SM-5LZXP 50-59 years, male 35.5
GTEX-13SLW-0011-R11a-SM-5SI8Q 70-79 years, male 35.3
GTEX-1399T-0011-R11a-SM-5J2O1 60-69 years, male 35.1
GTEX-13X6K-0011-R11a-SM-5P9F5 60-69 years, female 35.1
GTEX-13CF2-0011-R11b-SM-5LZXO 60-69 years, male 34.7
GTEX-WVLH-0011-R11A-SM-3MJFO 50-59 years, male 34.6
GTEX-N7MS-0011-R11A-SM-2HMJS 60-69 years, male 34.3
GTEX-13NZA-0011-R11b-SM-5KM4W 60-69 years, male 34.0
GTEX-QMR6-0011-R11A-SM-32PKK 50-59 years, male 33.9
GTEX-NL4W-0011-R11A-SM-2I3DW 50-59 years, male 33.7
GTEX-13G51-0011-R11b-SM-5J2NE 60-69 years, male 33.6
GTEX-13NYB-0011-R11a-SM-5KM3Q 40-49 years, male 33.6
GTEX-NL3H-0011-R11A-SM-2I3E6 60-69 years, male 33.6
GTEX-Q2AG-0011-R11A-SM-2HMKZ 40-49 years, female 33.5
GTEX-ZE7O-0011-R11a-SM-57WBC 50-59 years, female 33.4
GTEX-13OW6-0011-R11a-SM-5L3H2 50-59 years, male 33.3
GTEX-14BIN-0011-R11a-SM-5SI79 50-59 years, female 33.3
GTEX-ZVT3-0011-R11b-SM-57WBI 60-69 years, female 33.0
GTEX-11WQC-0011-R11b-SM-57WD6 60-69 years, male 32.9
GTEX-13OW7-0011-R11a-SM-5O9DY 50-59 years, male 32.9
GTEX-YFC4-0011-R11a-SM-4SOK6 40-49 years, female 32.5
GTEX-12WSI-0011-R11b-SM-5P9EZ 50-59 years, male 32.3
GTEX-TSE9-0011-R11A-SM-3DB7N 60-69 years, female 32.3
GTEX-ZDXO-0011-R11a-SM-4WWD9 60-69 years, male 32.3
GTEX-132Q8-0011-R11b-SM-5DUW9 60-69 years, male 32.1
GTEX-Y8DK-0011-R11A-SM-4SOK2 60-69 years, male 32.1
GTEX-13PVQ-0011-R11a-SM-5O9DU 50-59 years, male 32.0
GTEX-13NYS-0011-R11b-SM-5MR4P 60-69 years, male 31.8
GTEX-13QIC-0011-R11b-SM-5O9BU 60-69 years, female 31.8
GTEX-WL46-0011-R11A-SM-3MJFT 50-59 years, male 31.8
GTEX-13RTJ-0011-R11a-SM-5O9CK 60-69 years, male 31.4
GTEX-13OVL-0011-R11b-SM-5L3G7 50-59 years, male 30.8
GTEX-145MH-0011-R11a-SM-5P9HQ 50-59 years, male 30.8
GTEX-T2IS-0011-R11A-SM-32QPC 20-29 years, female 30.7
GTEX-13JUV-0011-R11a-SM-5LZYH 40-49 years, female 30.5
GTEX-1313W-0011-R11a-SM-5DUXN 50-59 years, female 30.4
GTEX-YJ89-0011-R11a-SM-4SOKA 60-69 years, male 30.2
GTEX-ZUA1-0011-R11b-SM-51MTI 40-49 years, male 30.0
GTEX-12WSM-0011-R11a-SM-5DUX8 60-69 years, male 29.9
GTEX-13X6I-0011-R11a-SM-5P9HN 60-69 years, male 29.6
GTEX-P44H-0011-R11A-SM-2XCER 40-49 years, male 29.3
GTEX-12WSB-0011-R11b-SM-57WBJ 60-69 years, female 29.1
GTEX-14ABY-0011-R11a-SM-5SI7C 50-59 years, male 29.1
GTEX-13FXS-0011-R11a-SM-5L3DM 50-59 years, male 29.0
GTEX-RVPV-0011-R11A-SM-2TF6F 60-69 years, male 29.0
GTEX-12WSE-0011-R11b-SM-5P9JW 20-29 years, male 28.7
GTEX-144GL-0011-R11b-SM-5P9F6 50-59 years, male 28.4
GTEX-11H98-0011-R11b-SM-5NQ6U 50-59 years, male 28.0
GTEX-145LU-0011-R11b-SM-5P9JX 50-59 years, male 28.0
GTEX-XOTO-0011-R11B-SM-4B64O 50-59 years, male 27.9
GTEX-13FLV-0011-R11a-SM-5LZZ7 50-59 years, male 27.8
GTEX-S7SE-0011-R11A-SM-2XCDD 50-59 years, male 26.6
GTEX-13CZV-0011-R11b-SM-5N9FN 60-69 years, male 26.5
GTEX-13O3O-0011-R11b-SM-5KM4G 60-69 years, female 26.1
GTEX-13SLX-0011-R11b-SM-5O9C8 50-59 years, female 26.0
GTEX-12126-0011-R11a-SM-5BC6X 20-29 years, male 25.3
GTEX-WHSE-0011-R11A-SM-3P5YY 20-29 years, male 25.3
GTEX-13PLJ-0011-R11b-SM-5O9BS 60-69 years, female 25.1
GTEX-13OW8-0011-R11a-SM-5L3GT 60-69 years, male 24.9
GTEX-ZVZQ-0011-R11a-SM-51MS6 60-69 years, female 24.7
GTEX-131XH-0011-R11a-SM-5EGLN 50-59 years, male 23.6
GTEX-13X6J-0011-R11a-SM-5P9HE 50-59 years, male 22.2
GTEX-OHPN-0011-R11A-SM-2I5FM 60-69 years, female 22.2
GTEX-ZF28-0011-R11a-SM-4WWEI 60-69 years, male 20.7
GTEX-11ZUS-0011-R11b-SM-5BC7B 30-39 years, male 20.2
GTEX-12ZZZ-0011-R11a-SM-5EGLC 60-69 years, male 18.5
GTEX-131XW-0011-R11a-SM-5DUV9 50-59 years, female 15.5
GTEX-12WSC-0011-R11a-SM-5GU5J 50-59 years, male 12.7
GTEX-139UW-0011-R11a-SM-5IJGN 60-69 years, male 12.0
Show all
Brain - Cerebellum
RPKM: 36.9
Samples: 125

Max RPKM: 51.0
Min RPKM: 15.9
Std RPKM: 5.9
Median RPKM: 37.0
GTEX-QDT8-3026-SM-32PKB 30-39 years, female 51.0
GTEX-NPJ8-2626-SM-2D7W2 40-49 years, male 49.9
GTEX-12ZZX-2826-SM-5BC6K 40-49 years, female 46.9
GTEX-X261-3126-SM-4PQZC 50-59 years, male 46.9
GTEX-13OVH-2926-SM-5IJFH 70-79 years, male 46.7
GTEX-11DXW-1026-SM-5H11K 40-49 years, male 46.2
GTEX-YFC4-3026-SM-5IFJK 40-49 years, female 46.2
GTEX-Y111-2826-SM-4TT3O 50-59 years, male 45.5
GTEX-WZTO-2826-SM-3NM8P 40-49 years, male 45.1
GTEX-Q2AG-2826-SM-2HMJQ 40-49 years, female 45.0
GTEX-PVOW-2626-SM-32PL8 40-49 years, male 44.8
GTEX-12WSM-2126-SM-5GCOC 60-69 years, male 44.6
GTEX-ZAJG-3026-SM-5HL92 50-59 years, female 44.5
GTEX-11ZUS-2826-SM-5EQKW 30-39 years, male 44.3
GTEX-XMD1-2826-SM-4AT5F 60-69 years, male 44.3
GTEX-13JVG-3226-SM-5IJGJ 60-69 years, male 43.9
GTEX-QVUS-2926-SM-3GIJB 60-69 years, female 43.9
GTEX-13S7M-3026-SM-5S2QQ 60-69 years, female 43.1
GTEX-T5JC-2326-SM-32PMR 20-29 years, male 42.8
GTEX-11O72-2826-SM-5HL6W 40-49 years, male 42.7
GTEX-12ZZY-2926-SM-5DUXO 60-69 years, male 42.6
GTEX-13N2G-3126-SM-5IJGL 60-69 years, male 42.6
GTEX-Z93S-2826-SM-57WBL 50-59 years, male 42.4
GTEX-PWO3-1026-SM-2I5F2 60-69 years, female 42.0
GTEX-13O3Q-3026-SM-5IJGD 50-59 years, male 41.9
GTEX-13G51-3126-SM-5IJG7 60-69 years, male 41.8
GTEX-X4EP-3026-SM-3P5YP 60-69 years, female 41.8
GTEX-12WSH-3126-SM-5LZW8 50-59 years, male 41.4
GTEX-UTHO-2926-SM-3P5Z9 60-69 years, male 41.1
GTEX-131YS-3026-SM-5EGHY 60-69 years, female 40.9
GTEX-13OW6-2926-SM-5KM29 50-59 years, male 40.7
GTEX-11PRG-2826-SM-5BC54 50-59 years, male 40.5
GTEX-13X6I-2926-SM-5Q5C3 60-69 years, male 40.5
GTEX-145LS-3026-SM-5O99S 60-69 years, female 40.3
GTEX-14E7W-2926-SM-5S2R8 70-79 years, male 40.2
GTEX-R55F-1226-SM-2TF59 50-59 years, male 40.2
GTEX-13NYB-3226-SM-5J2ND 40-49 years, male 39.9
GTEX-111FC-3326-SM-5GZYV 60-69 years, male 39.8
GTEX-ZUA1-2926-SM-59HL3 40-49 years, male 39.7
GTEX-11ZVC-3026-SM-59HJM 50-59 years, female 39.6
GTEX-14BIN-3326-SM-5Q5E6 50-59 years, female 39.6
GTEX-13CF2-3026-SM-5IFFX 60-69 years, male 39.5
GTEX-T2IS-2926-SM-32QPO 20-29 years, female 39.4
GTEX-1313W-3026-SM-5LZUZ 50-59 years, female 39.2
GTEX-QMR6-1326-SM-32PLB 50-59 years, male 39.2
GTEX-14BIM-3126-SM-5Q5C7 60-69 years, female 38.9
GTEX-X4XX-2926-SM-3NMB1 60-69 years, male 38.7
GTEX-11GSO-3026-SM-5Q5AL 60-69 years, male 38.6
GTEX-1128S-2826-SM-5N9DI 60-69 years, female 38.5
GTEX-11NV4-2226-SM-5BC4T 60-69 years, male 38.5
GTEX-145LU-2626-SM-5LU9Z 50-59 years, male 38.5
GTEX-Y8DK-0726-SM-4TT3S 60-69 years, male 38.4
GTEX-1192X-3226-SM-5987D 50-59 years, male 38.3
GTEX-13OVJ-2726-SM-5IJG6 50-59 years, female 38.3
GTEX-ZYY3-3026-SM-5GIEJ 60-69 years, female 38.2
GTEX-12126-0926-SM-5FQTW 20-29 years, male 38.0
GTEX-13PVQ-2926-SM-5L3HJ 50-59 years, male 38.0
GTEX-ZVT3-2926-SM-5GU6M 60-69 years, female 37.9
GTEX-11ONC-3026-SM-5985W 60-69 years, male 37.6
GTEX-TSE9-2926-SM-3DB77 60-69 years, female 37.5
GTEX-13X6K-2826-SM-5O9DS 60-69 years, female 37.2
GTEX-117XS-3126-SM-5GIDP 60-69 years, male 37.0
GTEX-11DYG-2926-SM-5H132 60-69 years, male 37.0
GTEX-13FHO-2926-SM-5L3ES 60-69 years, male 36.6
GTEX-13FHP-2926-SM-5IJG9 50-59 years, male 36.5
GTEX-13VXU-3026-SM-5LU3K 50-59 years, male 36.4
GTEX-ZAK1-2926-SM-5HL9S 50-59 years, female 36.3
GTEX-131XH-2926-SM-5LZU4 50-59 years, male 36.2
GTEX-132Q8-2926-SM-5IFFP 60-69 years, male 36.2
GTEX-11DXY-3126-SM-5N9BT 60-69 years, male 36.1
GTEX-XLM4-2926-SM-4AT59 60-69 years, male 36.1
GTEX-13112-2926-SM-5DUWT 50-59 years, male 35.9
GTEX-WWYW-3026-SM-3NB36 50-59 years, female 35.8
GTEX-11EMC-3326-SM-5P9JH 60-69 years, female 35.5
GTEX-12WSC-2926-SM-5BC5Z 50-59 years, male 35.5
GTEX-14ASI-2926-SM-5Q5DG 60-69 years, male 35.5
GTEX-RNOR-2226-SM-2TF5O 50-59 years, female 35.3
GTEX-139TS-3126-SM-5LZWX 60-69 years, male 35.2
GTEX-13JUV-3026-SM-5K7WX 40-49 years, female 35.2
GTEX-ZYFD-2926-SM-5GID9 50-59 years, male 35.1
GTEX-T6MN-2526-SM-32PMN 50-59 years, male 35.0
GTEX-WVLH-2926-SM-3MJG5 50-59 years, male 35.0
GTEX-11DZ1-2926-SM-5A5KI 50-59 years, male 34.9
GTEX-14DAQ-3026-SM-5S2QZ 60-69 years, female 34.8
GTEX-N7MT-1226-SM-2D7W4 60-69 years, female 34.4
GTEX-11EI6-2926-SM-5985U 60-69 years, male 34.3
GTEX-139TT-2626-SM-5LZUB 60-69 years, male 34.3
GTEX-NPJ7-2826-SM-2I3FU 60-69 years, female 34.2
GTEX-YJ89-2926-SM-5P9IT 60-69 years, male 33.9
GTEX-12ZZZ-3126-SM-5LZU6 60-69 years, male 33.8
GTEX-P44H-2426-SM-2XCEJ 40-49 years, male 33.8
GTEX-13OW7-2926-SM-5MR3Z 50-59 years, male 33.7
GTEX-145MH-2926-SM-5Q5D2 50-59 years, male 33.7
GTEX-12WSB-3026-SM-59HKM 60-69 years, female 33.6
GTEX-13QIC-3026-SM-5LU58 60-69 years, female 33.4
GTEX-1399T-3126-SM-5IJFS 60-69 years, male 33.3
GTEX-S7SE-2526-SM-2XCDL 50-59 years, male 33.2
GTEX-144GL-2926-SM-5O99F 50-59 years, male 33.1
GTEX-13OW5-3126-SM-5MR3Y 60-69 years, male 32.7
GTEX-13RTJ-3126-SM-5S2Q4 60-69 years, male 32.7
GTEX-11ZTS-3226-SM-5EGID 60-69 years, female 32.5
GTEX-N7MS-2526-SM-2D7W3 60-69 years, male 32.5
GTEX-R55E-2526-SM-2TC6H 20-29 years, male 32.5
GTEX-WL46-2826-SM-3LK81 50-59 years, male 32.1
GTEX-QVJO-1325-SM-2S1QX 60-69 years, female 32.0
GTEX-11NUK-3026-SM-5986K 50-59 years, male 31.0
GTEX-13OVL-3026-SM-5IJF1 50-59 years, male 31.0
GTEX-11GSP-3126-SM-5A5LL 60-69 years, female 30.8
GTEX-145MG-3126-SM-5Q5D3 50-59 years, male 30.6
GTEX-14A5I-2826-SM-5SIBF 50-59 years, female 30.6
GTEX-12WSE-2926-SM-5RQJ9 20-29 years, male 29.2
GTEX-ZAB4-2926-SM-57WCV 40-49 years, male 29.1
GTEX-13FXS-3026-SM-5LZYO 50-59 years, male 28.9
GTEX-13OW8-2926-SM-5L3FV 60-69 years, male 28.7
GTEX-12WSD-3026-SM-5LZU7 60-69 years, female 28.6
GTEX-11TTK-2826-SM-5GU5K 60-69 years, female 28.2
GTEX-13O3O-3026-SM-5KM42 60-69 years, female 28.2
GTEX-147F4-3026-SM-5Q5BJ 50-59 years, male 27.7
GTEX-XOTO-2926-SM-4B65G 50-59 years, male 27.6
GTEX-14C5O-2926-SM-5RQI1 60-69 years, male 27.3
GTEX-WHSE-2926-SM-3NMBG 20-29 years, male 26.3
GTEX-RU72-2926-SM-2TF66 50-59 years, female 23.7
GTEX-ZZPT-2926-SM-5EQ5S 50-59 years, male 23.6
GTEX-1269C-3126-SM-5EGI6 60-69 years, female 20.6
GTEX-11OF3-3126-SM-5GU5E 60-69 years, male 15.9
Show all

CEREBELLUM - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

107.2

FANTOM5 sample id

Sample description

Tags Per Million

Cerebellum
Tags Per Million: 107.2
FF:10166-103B4 76 years, female 181.6
FF:10083-102B2 22-68 years, mixed 32.7

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.