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TISSUE ATLAS PRIMARY DATA STOMACH

GENE/PROTEIN

Antibody validation


Dictionary

Stomach, lower
Stomach, upper

Tissue proteome

Stomach

STOMACH - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:43.9TPM
GTEx:10.1RPKM

STOMACH 1 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA002911

 

Glandular cells

Low  
 
 
 

STOMACH 2 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA002911

 

Glandular cells

Medium  
 
 
 

STOMACH - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

43.9

overview Female, age 33 Sample 1
TPM: 14.4
Cell types%
Glandular cells: 60
Smooth muscle cells: 5
Other cell types: 35
N/A Male, age 82 Sample 2
TPM: 41
Cell types%
Glandular cells: 65
Smooth muscle cells: 5
Other cell types: 30
overview Male, age 71 Sample 3
TPM: 83.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 5
Other cell types: 45
overview Female, age 66 Sample 4
TPM: 36.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 10
Other cell types: 40

STOMACH - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

10.1

GTEx sample id

Sample description

RPKM

Stomach
RPKM: 10.1
Samples: 193

Max RPKM: 54.2
Min RPKM: 0.0
Std RPKM: 10.9
Median RPKM: 7.8
GTEX-117YX-1026-SM-5H11V 50-59 years, male 54.2
GTEX-13FTX-0726-SM-5N9BI 20-29 years, female 49.2
GTEX-P4PP-1526-SM-3P61M 30-39 years, female 45.4
GTEX-1399S-1626-SM-5P9GI 30-39 years, female 43.7
GTEX-TMMY-1626-SM-4DXTY 40-49 years, female 41.2
GTEX-Y3IK-1426-SM-4YCES 50-59 years, female 35.2
GTEX-131XG-1226-SM-5EGH9 50-59 years, female 35.0
GTEX-11DXX-1326-SM-5GIDZ 60-69 years, female 34.0
GTEX-PWN1-1526-SM-48TDA 40-49 years, female 33.5
GTEX-XUJ4-1226-SM-4BOPD 60-69 years, female 32.7
GTEX-12WSK-1426-SM-5CVNN 40-49 years, female 29.8
GTEX-SNOS-0826-SM-4DM5N 40-49 years, male 29.6
GTEX-T6MO-0726-SM-4DM58 40-49 years, female 29.2
GTEX-S341-0626-SM-4AD5T 40-49 years, female 29.1
GTEX-132QS-1826-SM-5IFFN 60-69 years, male 28.8
GTEX-ZYY3-1726-SM-5EGH3 60-69 years, female 26.9
GTEX-ZVP2-1626-SM-5GU5D 50-59 years, male 25.0
GTEX-QCQG-0526-SM-48U2A 50-59 years, female 24.7
GTEX-ZLFU-1326-SM-4WWET 40-49 years, male 24.4
GTEX-PWCY-0926-SM-48TD7 20-29 years, female 24.2
GTEX-11I78-1726-SM-5A5M3 50-59 years, female 24.1
GTEX-S3XE-1026-SM-4AD4O 50-59 years, male 23.3
GTEX-111CU-0926-SM-5EGIK 50-59 years, male 22.9
GTEX-1399R-1126-SM-5IFIO 30-39 years, male 22.9
GTEX-11GSP-2126-SM-5HL5E 60-69 years, female 21.8
GTEX-Y9LG-1026-SM-5IFJN 30-39 years, male 21.7
GTEX-WFG8-1326-SM-4LVN3 20-29 years, male 21.4
GTEX-OHPK-1526-SM-3MJGM 50-59 years, female 21.3
GTEX-13O21-0926-SM-5IFGT 50-59 years, male 21.2
GTEX-13CF3-1926-SM-5K7WF 60-69 years, female 20.5
GTEX-13OW6-2526-SM-5IJEC 50-59 years, male 20.5
GTEX-U4B1-1026-SM-4DXT1 40-49 years, male 20.3
GTEX-ZXES-1426-SM-5NQ8S 30-39 years, female 20.1
GTEX-13PVQ-2126-SM-5L3FW 50-59 years, male 19.5
GTEX-13FTW-1726-SM-5KM2B 40-49 years, male 19.4
GTEX-ZVT3-2126-SM-59HL2 60-69 years, female 19.4
GTEX-YFCO-0826-SM-5LUAG 40-49 years, male 19.2
GTEX-T5JW-0926-SM-4DM5K 20-29 years, female 19.0
GTEX-Y5LM-1326-SM-5RQIS 40-49 years, female 19.0
GTEX-QDVN-1226-SM-48TZ5 50-59 years, male 18.9
GTEX-WRHK-0626-SM-4MVOE 20-29 years, female 18.2
GTEX-ZQUD-0826-SM-57WDQ 30-39 years, male 18.2
GTEX-RTLS-2626-SM-46MUJ 60-69 years, female 17.9
GTEX-T8EM-1226-SM-4DM5J 40-49 years, male 17.7
GTEX-ZLV1-0826-SM-4WWEQ 60-69 years, female 16.8
GTEX-S4Q7-0726-SM-4AD5F 20-29 years, male 16.6
GTEX-145MN-1326-SM-5NQ9S 30-39 years, male 16.5
GTEX-145ME-1026-SM-5O9B4 40-49 years, female 15.9
GTEX-OOBJ-1526-SM-3NB1Q 60-69 years, male 15.6
GTEX-S95S-0826-SM-4B64N 60-69 years, male 15.2
GTEX-XQ8I-2026-SM-4BOOL 50-59 years, male 15.2
GTEX-ZYFG-1326-SM-5GICJ 60-69 years, female 14.8
GTEX-12BJ1-1726-SM-5HL9B 60-69 years, male 14.5
GTEX-13D11-2126-SM-5IFH2 50-59 years, female 14.3
GTEX-RM2N-0826-SM-48FD3 50-59 years, male 14.0
GTEX-13S7M-1826-SM-5RQK6 60-69 years, female 13.9
GTEX-12WSD-2326-SM-59HKQ 60-69 years, female 13.7
GTEX-VJYA-1026-SM-4KL21 60-69 years, male 13.7
GTEX-ZY6K-0726-SM-5A5L8 50-59 years, male 13.7
GTEX-ZVZP-1726-SM-5GZWY 50-59 years, male 13.6
GTEX-111YS-1126-SM-5GZYQ 60-69 years, male 13.4
GTEX-QV31-0626-SM-447C5 30-39 years, male 12.8
GTEX-QDVJ-1426-SM-48U1Y 50-59 years, male 12.6
GTEX-11EM3-1026-SM-5A5KL 20-29 years, female 12.5
GTEX-ZZ64-0426-SM-5E43F 20-29 years, male 12.4
GTEX-RWS6-0926-SM-47JXE 60-69 years, female 12.3
GTEX-XBEW-1826-SM-4RTWX 40-49 years, male 12.0
GTEX-PWOO-1226-SM-48TCO 40-49 years, female 11.8
GTEX-117YW-2226-SM-5N9DB 50-59 years, male 11.7
GTEX-131XF-1226-SM-5HL8V 60-69 years, male 11.5
GTEX-YEC4-1426-SM-5IFHS 40-49 years, male 11.2
GTEX-ZA64-0826-SM-5HL9U 20-29 years, male 11.1
GTEX-133LE-1326-SM-5IFGO 20-29 years, female 10.9
GTEX-WFON-1126-SM-4LVMA 40-49 years, male 10.9
GTEX-ZDYS-1926-SM-5HL59 50-59 years, male 10.8
GTEX-P78B-1826-SM-3P5YX 40-49 years, female 10.5
GTEX-S4UY-1626-SM-4AD55 40-49 years, female 10.4
GTEX-ZPU1-1626-SM-4WWB2 40-49 years, male 10.3
GTEX-13RTK-0226-SM-5RQHR 20-29 years, male 10.2
GTEX-13113-0726-SM-5LZUF 60-69 years, female 9.8
GTEX-UJMC-1226-SM-4IHLI 50-59 years, male 9.8
GTEX-ZF2S-1426-SM-57WET 50-59 years, female 9.7
GTEX-13QBU-1126-SM-5LU44 40-49 years, female 9.6
GTEX-14BMU-1126-SM-5RQJ8 20-29 years, female 9.6
GTEX-ZP4G-1226-SM-4WWCJ 20-29 years, female 9.6
GTEX-11NUK-2426-SM-5BC4U 50-59 years, male 9.5
GTEX-SIU7-1426-SM-4BRWT 50-59 years, male 9.4
GTEX-WEY5-1226-SM-4LMIQ 40-49 years, female 9.3
GTEX-XUZC-0726-SM-4BOPH 30-39 years, female 9.2
GTEX-12696-1726-SM-5EQLH 60-69 years, male 8.8
GTEX-QLQ7-0826-SM-447B3 60-69 years, male 8.8
GTEX-WHPG-0426-SM-4M1XW 50-59 years, male 8.8
GTEX-11NSD-1426-SM-5HL67 20-29 years, male 8.6
GTEX-ZV7C-1626-SM-5NQ7E 50-59 years, male 8.6
GTEX-O5YW-1526-SM-3MJGL 50-59 years, male 8.5
GTEX-U3ZN-2026-SM-4DXUC 30-39 years, female 7.9
GTEX-WFG7-1326-SM-4LMK1 20-29 years, male 7.8
GTEX-1122O-1926-SM-5EGIQ 60-69 years, female 7.7
GTEX-132AR-2426-SM-5IFFD 50-59 years, female 7.5
GTEX-QXCU-1926-SM-48FE4 50-59 years, male 7.4
GTEX-13U4I-2526-SM-5SI8Z 40-49 years, female 7.2
GTEX-QMRM-1126-SM-447BN 50-59 years, male 7.2
GTEX-ZVT2-1626-SM-51MRC 50-59 years, female 7.1
GTEX-Q2AH-1126-SM-48TZM 40-49 years, male 7.0
GTEX-Y8LW-0826-SM-4WWDO 50-59 years, female 6.8
GTEX-QV44-1226-SM-4R1KE 50-59 years, male 6.5
GTEX-Q2AI-0826-SM-48TZO 40-49 years, male 6.4
GTEX-Q734-1026-SM-48U16 40-49 years, female 6.3
GTEX-XV7Q-1326-SM-4BRWM 40-49 years, female 6.2
GTEX-ZZPU-1426-SM-5GZZ6 50-59 years, female 6.2
GTEX-PX3G-1526-SM-48U11 20-29 years, female 5.6
GTEX-POMQ-0826-SM-3P61H 20-29 years, female 5.0
GTEX-R53T-1226-SM-48FCT 50-59 years, female 4.7
GTEX-SNMC-0626-SM-4DM6H 20-29 years, male 4.7
GTEX-WHWD-1426-SM-4OORU 50-59 years, male 4.1
GTEX-V955-1326-SM-4JBHR 60-69 years, male 3.7
GTEX-144GN-1226-SM-5O991 50-59 years, male 3.6
GTEX-11TT1-0726-SM-5GU5A 20-29 years, male 3.3
GTEX-QLQW-0726-SM-447AA 30-39 years, male 3.3
GTEX-Y8E4-1526-SM-4WWDI 40-49 years, male 2.4
GTEX-XBED-1226-SM-4AT5V 60-69 years, male 2.3
GTEX-SUCS-0926-SM-4DM4Z 70-79 years, male 2.2
GTEX-145MO-2226-SM-5Q5BN 60-69 years, male 2.0
GTEX-13OVI-2426-SM-5KM4J 60-69 years, female 1.7
GTEX-PW2O-1226-SM-48TCH 20-29 years, male 1.6
GTEX-X15G-1126-SM-4PQZG 50-59 years, female 1.5
GTEX-14BMV-2226-SM-5RQHX 50-59 years, male 1.4
GTEX-NFK9-1526-SM-3LK7B 40-49 years, male 1.4
GTEX-XXEK-0826-SM-4BRWG 50-59 years, male 1.4
GTEX-12WSG-2026-SM-5FQUU 50-59 years, female 1.2
GTEX-ZAB4-1526-SM-5CVN7 40-49 years, male 1.1
GTEX-13FH7-1026-SM-5IJGF 50-59 years, female 1.0
GTEX-V1D1-1726-SM-4JBHB 50-59 years, male 1.0
GTEX-139D8-2326-SM-5IFGE 30-39 years, female 0.9
GTEX-144GM-1726-SM-5O9AS 20-29 years, male 0.9
GTEX-11EQ9-1226-SM-5987E 30-39 years, male 0.7
GTEX-S7SF-0626-SM-4AD4V 20-29 years, female 0.7
GTEX-U8T8-1226-SM-4E3IH 60-69 years, male 0.6
GTEX-YJ8A-1526-SM-5P9FT 20-29 years, male 0.6
GTEX-ZT9W-1526-SM-4YCDE 50-59 years, male 0.5
GTEX-OXRK-1626-SM-3NB17 50-59 years, female 0.4
GTEX-Y3I4-1626-SM-4TT7W 50-59 years, male 0.4
GTEX-Y5V6-1326-SM-4VDTF 60-69 years, male 0.4
GTEX-145LT-1426-SM-5O9B3 40-49 years, male 0.3
GTEX-ZPIC-2026-SM-57WG3 40-49 years, female 0.2
GTEX-1211K-1426-SM-5FQTF 60-69 years, female 0.1
GTEX-1399U-1626-SM-5P9J3 50-59 years, female 0.1
GTEX-139YR-1926-SM-5LZXM 50-59 years, male 0.1
GTEX-13O3Q-2126-SM-5KM4C 50-59 years, male 0.1
GTEX-P4QT-1526-SM-3NMCT 50-59 years, female 0.1
GTEX-R55C-1026-SM-48FCM 40-49 years, male 0.1
GTEX-S4P3-0726-SM-4AD57 50-59 years, female 0.1
GTEX-T5JC-1926-SM-4DM6Q 20-29 years, male 0.1
GTEX-UPK5-2126-SM-4JBJK 40-49 years, male 0.1
GTEX-W5WG-1726-SM-4LMI5 50-59 years, female 0.1
GTEX-WH7G-1526-SM-4LVMX 40-49 years, male 0.1
GTEX-ZYVF-2726-SM-5GID4 50-59 years, female 0.1
GTEX-11EI6-2426-SM-5PNVS 60-69 years, male 0.0
GTEX-11P7K-1726-SM-5GU6F 30-39 years, male 0.0
GTEX-11P82-0726-SM-5PNYL 20-29 years, male 0.0
GTEX-11VI4-0326-SM-5EQ6L 40-49 years, female 0.0
GTEX-11WQK-2626-SM-5EQ4K 50-59 years, male 0.0
GTEX-12C56-0526-SM-5FQST 20-29 years, male 0.0
GTEX-12WSJ-0926-SM-5P9JD 40-49 years, female 0.0
GTEX-13111-1226-SM-5GCNC 50-59 years, male 0.0
GTEX-131XE-2226-SM-5PNYX 50-59 years, male 0.0
GTEX-1339X-1426-SM-5K7YO 40-49 years, male 0.0
GTEX-13N1W-2026-SM-5K7YU 70-79 years, male 0.0
GTEX-13O61-1126-SM-5L3FI 60-69 years, male 0.0
GTEX-13QJ3-2726-SM-5SI6L 50-59 years, male 0.0
GTEX-13X6H-1626-SM-5Q5CT 50-59 years, female 0.0
GTEX-146FH-2126-SM-5SI9U 50-59 years, female 0.0
GTEX-146FR-2026-SM-5NQAI 60-69 years, female 0.0
GTEX-OIZH-1526-SM-3NB1J 50-59 years, male 0.0
GTEX-P4PQ-1526-SM-3NMCK 60-69 years, male 0.0
GTEX-PLZ6-0826-SM-3P61K 30-39 years, male 0.0
GTEX-R55D-1526-SM-48FEJ 50-59 years, male 0.0
GTEX-R55G-1126-SM-48FDG 40-49 years, female 0.0
GTEX-RU1J-0526-SM-46MUT 20-29 years, female 0.0
GTEX-S4Z8-1226-SM-4AD6W 60-69 years, male 0.0
GTEX-TKQ1-0526-SM-4DXTG 30-39 years, male 0.0
GTEX-TKQ2-0926-SM-4DXU5 50-59 years, male 0.0
GTEX-UJHI-1026-SM-4IHJP 50-59 years, female 0.0
GTEX-UPIC-1826-SM-4IHKC 20-29 years, female 0.0
GTEX-WFJO-1126-SM-4LVLZ 30-39 years, male 0.0
GTEX-WZTO-2126-SM-4PQYW 40-49 years, male 0.0
GTEX-XAJ8-0326-SM-47JYI 40-49 years, male 0.0
GTEX-XPVG-1526-SM-4B66C 50-59 years, male 0.0
GTEX-Y114-1226-SM-4TT88 50-59 years, female 0.0
GTEX-YEC3-1426-101806-SM-5PNXX 50-59 years, male 0.0
GTEX-ZE7O-3026-SM-51MS4 50-59 years, female 0.0
GTEX-ZTX8-0426-SM-59HLG 20-29 years, male 0.0
GTEX-ZV6S-0926-SM-57WGB 40-49 years, female 0.0
Show all

STOMACH - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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