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TISSUE ATLAS PRIMARY DATA VAGINA

GENE/PROTEIN

Antibody validation


Dictionary

Vagina

VAGINA - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:9.3RPKM
FANTOM5:56.2Tags Per Million

VAGINA - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Squamous epithelial cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA007505

 

Squamous epithelial cells

Not detected  
 
 
 

VAGINA - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


VAGINA - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

9.3

GTEx sample id

Sample description

RPKM

Vagina
RPKM: 9.3
Samples: 96

Max RPKM: 16.5
Min RPKM: 2.9
Std RPKM: 2.8
Median RPKM: 9.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 16.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 15.7
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 14.9
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 14.7
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 14.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 14.1
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 13.5
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 13.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 13.0
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 13.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 13.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 12.7
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 12.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 12.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 12.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 12.4
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 12.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 12.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 12.1
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 11.9
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 11.9
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 11.8
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 11.8
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 11.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 11.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 11.5
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 11.3
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 11.2
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 11.1
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 10.9
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 10.6
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 10.4
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 10.4
GTEX-Q734-1426-SM-48TZQ 40-49 years, female 10.3
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 10.2
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 10.2
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 10.2
GTEX-ZYWO-2026-SM-5GIDA 40-49 years, female 9.9
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 9.8
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 9.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 9.7
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 9.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 9.5
GTEX-QCQG-1226-SM-48U23 50-59 years, female 9.5
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 9.4
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 9.4
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 9.3
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 9.3
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 9.3
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 9.2
GTEX-NL3G-2526-SM-4SOIE 60-69 years, female 9.1
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 9.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 8.8
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 8.7
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 8.6
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 8.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 8.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 8.6
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 8.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 8.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 8.0
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 7.9
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 7.9
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 7.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 7.8
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 7.7
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 7.7
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 7.7
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 7.6
GTEX-PWOO-2026-SM-48TDE 40-49 years, female 7.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 7.5
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 7.5
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 7.4
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 7.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 7.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 7.1
GTEX-12WSB-2426-SM-5EGJC 60-69 years, female 7.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 7.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 6.9
GTEX-UPIC-1426-SM-4IHLQ 20-29 years, female 6.2
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 6.2
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 6.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 5.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 5.8
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 5.8
GTEX-QVJO-2526-SM-4R1KB 60-69 years, female 5.7
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 5.6
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 5.5
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 5.4
GTEX-XUJ4-1626-SM-4BONV 60-69 years, female 5.1
GTEX-11I78-2026-SM-5987C 50-59 years, female 5.0
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 5.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 4.7
GTEX-S341-1226-SM-4AD5S 40-49 years, female 4.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 3.6
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2.9
Show all

VAGINA - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

56.2

FANTOM5 sample id

Sample description

Tags Per Million

Vagina
Tags Per Million: 56.2
FF:10204-103F6 68 years, female 56.2

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.