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TISSUE ATLAS PRIMARY DATA LIVER

GENE/PROTEIN

Antibody validation


Dictionary

Liver

Tissue proteome

Liver

LIVER - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:157.8TPM
GTEx:45.9RPKM
FANTOM5:197.7Tags Per Million

LIVER - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Bile duct cells:Medium
Hepatocytes:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA002868

 

Antibody CAB009822

 

Antibody CAB068233

 

Antibody CAB068234

 

Antibody CAB068235

 

Bile duct cells

Medium   Low   Medium   Medium   Medium  

Hepatocytes

High   High   High   High   High  
         
         
         

LIVER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

157.8

N/A Female, age 60 Sample 1
TPM: 124.8
overview Male, age 54 Sample 2
TPM: 121.6
Cell types%
Hepatocytes: 80
Fibroblasts: 15
Other cell types: 5
overview Male, age 74 Sample 3
TPM: 140
Cell types%
Hepatocytes: 85
Fibroblasts: 5
Other cell types: 10
overview Female, age 62 Sample 4
TPM: 218.9
Cell types%
Hepatocytes: 70
Fibroblasts: 10
Other cell types: 20
overview Male, age 78 Sample 5
TPM: 146.9
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Male, age 53 Sample 6
TPM: 164.2
Cell types%
Hepatocytes: 80
Fibroblasts: 5
Other cell types: 15
overview Male, age 77 Sample 7
TPM: 142.5
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Female, age 72 Sample 8
TPM: 143.6
Cell types%
Hepatocytes: 50
Fibroblasts: 10
Other cell types: 40
overview Male, age 70 Sample 9
TPM: 131.8
Cell types%
Hepatocytes: 65
Fibroblasts: 10
Other cell types: 25
overview Female, age 23 Sample 10
TPM: 244
Cell types%
Hepatocytes: 70
Fibroblasts: 5
Other cell types: 25

LIVER - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

45.9

GTEx sample id

Sample description

RPKM

Liver
RPKM: 45.9
Samples: 119

Max RPKM: 100.9
Min RPKM: 8.7
Std RPKM: 14.4
Median RPKM: 45.2
GTEX-13N11-0926-SM-5IJG2 50-59 years, female 100.9
GTEX-R53T-0326-SM-48FEC 50-59 years, female 90.2
GTEX-Y5LM-0426-SM-4VBRO 40-49 years, female 88.2
GTEX-13SLX-1226-SM-5S2Q6 50-59 years, female 85.7
GTEX-YB5E-0326-SM-5IFHU 40-49 years, male 77.0
GTEX-QESD-2026-SM-447BI 20-29 years, male 73.7
GTEX-13NYB-1026-SM-5IFH3 40-49 years, male 72.3
GTEX-ZPU1-0826-SM-57WG2 40-49 years, male 70.9
GTEX-13FTW-1126-SM-5J2NV 40-49 years, male 68.1
GTEX-S32W-1926-SM-4AD63 50-59 years, female 62.5
GTEX-13113-1326-SM-5GCOI 60-69 years, female 62.4
GTEX-P78B-1326-SM-3P611 40-49 years, female 62.2
GTEX-1269C-0626-SM-5FQSS 60-69 years, female 59.6
GTEX-OOBJ-0826-SM-3NB2K 60-69 years, male 59.2
GTEX-145MO-2326-SM-5NQ9K 60-69 years, male 59.0
GTEX-14AS3-0126-SM-5Q5F4 40-49 years, female 58.6
GTEX-14E1K-0326-SM-5S2PE 50-59 years, male 58.5
GTEX-ZVP2-0626-SM-51MSO 50-59 years, male 58.3
GTEX-13OW6-2626-SM-5IFF2 50-59 years, male 58.1
GTEX-S4Z8-0526-SM-4AD4T 60-69 years, male 58.1
GTEX-11EQ9-0526-SM-5A5JZ 30-39 years, male 57.3
GTEX-145MF-0826-SM-5QGQA 50-59 years, male 57.1
GTEX-UTHO-2426-SM-4JBHD 60-69 years, male 56.2
GTEX-13NZ9-1326-SM-5MR3V 50-59 years, male 55.7
GTEX-139YR-0226-SM-5IFEM 50-59 years, male 54.8
GTEX-ZAB5-0426-SM-5CVMI 50-59 years, male 54.7
GTEX-U3ZN-0226-SM-3DB8D 30-39 years, female 54.6
GTEX-139TU-0826-SM-5IJFG 60-69 years, male 54.3
GTEX-WFON-1726-SM-4LVMQ 40-49 years, male 53.9
GTEX-139TS-1426-SM-5IFJD 60-69 years, male 53.7
GTEX-ZYT6-0626-SM-5E45V 30-39 years, male 51.8
GTEX-Z9EW-0426-SM-5CVM9 40-49 years, male 51.4
GTEX-UPK5-1426-SM-4JBHH 40-49 years, male 50.7
GTEX-14753-1626-SM-5NQ9L 60-69 years, male 50.6
GTEX-1212Z-0226-SM-59HLF 60-69 years, male 50.5
GTEX-QEL4-1226-SM-447A4 50-59 years, male 50.5
GTEX-13PVR-0126-SM-5S2PY 60-69 years, female 50.4
GTEX-1399R-1226-SM-5P9GF 30-39 years, male 50.3
GTEX-132NY-0926-SM-5P9G3 60-69 years, male 50.2
GTEX-14DAQ-1726-SM-5S2R2 60-69 years, female 50.2
GTEX-UPIC-0926-SM-4IHLV 20-29 years, female 49.7
GTEX-ZZPU-0426-SM-5GZYH 50-59 years, female 49.7
GTEX-WQUQ-1926-SM-4OOSA 60-69 years, male 49.3
GTEX-ZF29-2026-SM-4WWB7 60-69 years, female 49.3
GTEX-12KS4-1326-SM-5LUB3 30-39 years, male 49.0
GTEX-X4EO-1126-SM-4QARQ 60-69 years, female 48.5
GTEX-XOTO-0826-SM-4B65O 50-59 years, male 47.9
GTEX-12WSD-1426-SM-5GCN9 60-69 years, female 47.8
GTEX-ZF2S-3026-SM-4WWCH 50-59 years, female 47.6
GTEX-RU72-1426-SM-46MUF 50-59 years, female 47.1
GTEX-13FLV-0326-SM-5N9DJ 50-59 years, male 47.0
GTEX-147JS-1126-SM-5RQIW 60-69 years, male 46.9
GTEX-QEG4-1826-SM-4R1JN 30-39 years, male 46.9
GTEX-RTLS-1326-SM-46MUN 60-69 years, female 46.8
GTEX-131XH-0626-SM-5LZWH 50-59 years, male 46.2
GTEX-12696-0826-SM-5EGGE 60-69 years, male 46.1
GTEX-RM2N-1926-SM-48FCU 50-59 years, male 46.0
GTEX-13FTZ-0726-SM-5IFFY 60-69 years, male 45.7
GTEX-11DXZ-0126-SM-5EGGY 50-59 years, male 45.3
GTEX-1497J-0726-SM-5Q5D1 60-69 years, male 45.2
GTEX-Y5V5-0926-SM-4VBPZ 60-69 years, female 45.0
GTEX-PX3G-0826-SM-48TZS 20-29 years, female 44.9
GTEX-QV44-0326-SM-4R1KD 50-59 years, male 44.7
GTEX-X3Y1-2726-SM-4PQZH 40-49 years, male 44.5
GTEX-ZTPG-1426-SM-51MT3 20-29 years, female 43.0
GTEX-12WSL-0226-SM-5CVMJ 50-59 years, male 42.9
GTEX-ZVT3-1626-SM-5GU66 60-69 years, female 42.2
GTEX-REY6-1226-SM-48FDR 60-69 years, male 42.0
GTEX-13QJC-0726-SM-5RQJK 60-69 years, female 41.5
GTEX-X4EP-1026-SM-4QAS5 60-69 years, female 41.2
GTEX-11WQC-0726-SM-5EQMR 60-69 years, male 40.9
GTEX-14C38-1526-SM-5RQJ7 50-59 years, male 40.9
GTEX-VUSG-0126-SM-4KL1X 50-59 years, male 40.8
GTEX-TKQ2-1726-SM-4DXUP 50-59 years, male 40.4
GTEX-YECK-1926-SM-4W21H 60-69 years, male 39.9
GTEX-ZYY3-0626-SM-5NQ6W 60-69 years, female 39.9
GTEX-12WSG-0626-SM-5FQTQ 50-59 years, female 39.8
GTEX-RWSA-1426-SM-47JXA 40-49 years, male 39.6
GTEX-12WSM-0726-SM-5GCOW 60-69 years, male 38.7
GTEX-1399T-0826-SM-5IFES 60-69 years, male 38.7
GTEX-YEC4-0826-SM-5P9FV 40-49 years, male 38.7
GTEX-Q734-0326-SM-48U15 40-49 years, female 38.4
GTEX-11DXY-0526-SM-5EGGQ 60-69 years, male 38.3
GTEX-WYVS-1926-SM-4PQZ2 40-49 years, female 38.2
GTEX-YFC4-1526-SM-5IFJS 40-49 years, female 38.2
GTEX-11OF3-0726-SM-5BC4Z 60-69 years, male 38.1
GTEX-T6MN-1226-SM-3NMA5 50-59 years, male 37.7
GTEX-11NV4-1326-SM-5HL6V 60-69 years, male 37.3
GTEX-131YS-1626-SM-5HL6C 60-69 years, female 36.7
GTEX-14A5I-1726-SM-5QGQ5 50-59 years, female 36.6
GTEX-S33H-1626-SM-4AD68 30-39 years, male 36.6
GTEX-13VXU-0926-SM-5IFFH 50-59 years, male 36.3
GTEX-11ZVC-0726-SM-5FQT9 50-59 years, female 36.2
GTEX-146FH-1526-SM-5NQBU 50-59 years, female 36.1
GTEX-13N2G-0926-SM-5IFGJ 60-69 years, male 35.2
GTEX-QDVN-0826-SM-48TZ2 50-59 years, male 34.1
GTEX-12WSI-0226-SM-5GCNA 50-59 years, male 34.0
GTEX-13112-1426-SM-5EGH8 50-59 years, male 33.0
GTEX-13NZB-0626-SM-5IFH6 30-39 years, male 32.9
GTEX-147F4-1426-SM-5LUA8 50-59 years, male 32.9
GTEX-ZVT4-0626-SM-5E45T 50-59 years, female 32.7
GTEX-SJXC-1226-SM-4DM78 60-69 years, male 32.3
GTEX-11GSP-0626-SM-5986T 60-69 years, female 31.8
GTEX-ZAB4-0826-SM-5LU9D 40-49 years, male 31.4
GTEX-11NUK-1226-SM-5P9GM 50-59 years, male 31.3
GTEX-13O3O-1826-SM-5IFGW 60-69 years, female 31.2
GTEX-11ZTS-1426-SM-5EQMM 60-69 years, female 30.6
GTEX-144GM-1326-SM-5LU5E 20-29 years, male 29.6
GTEX-WZTO-0626-SM-4PQYY 40-49 years, male 28.1
GTEX-131XE-0326-SM-5LZVO 50-59 years, male 28.0
GTEX-XBEC-1526-SM-4AT68 50-59 years, male 27.5
GTEX-RNOR-1426-SM-48FDJ 50-59 years, female 27.3
GTEX-RN64-1826-SM-48FDV 50-59 years, male 26.5
GTEX-145LU-1326-SM-5LU9N 50-59 years, male 26.2
GTEX-Q2AG-1126-SM-48U1P 40-49 years, female 25.3
GTEX-X261-1726-SM-4PQYT 50-59 years, male 25.1
GTEX-11ZUS-2526-SM-59872 30-39 years, male 24.7
GTEX-X4XY-1626-SM-46MVN 60-69 years, male 20.6
GTEX-12ZZZ-1326-SM-59HKW 60-69 years, male 8.7
Show all

LIVER - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

197.7

FANTOM5 sample id

Sample description

Tags Per Million

Liver
Tags Per Million: 197.7
FF:10018-101C9 64,69,70 years, mixed 197.7

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