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ABCD4
  • TISSUE

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TISSUE ATLAS PRIMARY DATA PROSTATE

GENE/PROTEIN

Antibody validation


Dictionary

Prostate

Tissue proteome

Prostate

PROSTATE - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:4.0TPM
GTEx:13.0RPKM
FANTOM5:23.1Tags Per Million

PROSTATE - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA003396

 

Glandular cells

Low  
 
 
 

PROSTATE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

4.0

overview Male, age 62 Sample 1
TPM: 1.6
Cell types%
Glandular cells: 30
Smooth muscle cells: 55
Skeletal muscle cells: 5
Other cell types: 10
N/A Male, age 65 Sample 2
TPM: 4
Cell types%
Glandular cells: 20
Smooth muscle cells: 60
Other cell types: 20
overview Male, age 65 Sample 3
TPM: 6.4
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 68 Sample 4
TPM: 2
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 60 Sample 5
TPM: 2.7
Cell types%
Glandular cells: 40
Smooth muscle cells: 55
Other cell types: 5
overview Male, age 66 Sample 6
TPM: 4.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 45
Other cell types: 5
overview Male, age 63 Sample 7
TPM: 6
Cell types%
Glandular cells: 60
Smooth muscle cells: 35
Other cell types: 5
overview Male, age 66 Sample 8
TPM: 6.7
Cell types%
Glandular cells: 65
Smooth muscle cells: 30
Other cell types: 5
overview Male, age 58 Sample 9
TPM: 4.2
Cell types%
Glandular cells: 45
Smooth muscle cells: 50
Other cell types: 5

PROSTATE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

13.0

GTEx sample id

Sample description

RPKM

Prostate
RPKM: 13.0
Samples: 106

Max RPKM: 25.0
Min RPKM: 6.5
Std RPKM: 3.5
Median RPKM: 12.8
GTEX-NPJ8-2426-SM-3MJHL 40-49 years, male 25.0
GTEX-ZTTD-2726-SM-57WFA 50-59 years, male 21.4
GTEX-RWSA-2026-SM-47JX8 40-49 years, male 20.8
GTEX-11O72-2726-SM-5HL6K 40-49 years, male 20.5
GTEX-13FHO-2826-SM-5K7ZA 60-69 years, male 20.3
GTEX-13NYS-1026-SM-5KLZT 60-69 years, male 20.0
GTEX-11DYG-2526-SM-5N9BB 60-69 years, male 19.6
GTEX-UTHO-2726-SM-4JBH9 60-69 years, male 19.2
GTEX-11OF3-1726-SM-5GU5Q 60-69 years, male 18.8
GTEX-145LV-1226-SM-5S2QH 50-59 years, male 17.4
GTEX-U412-2026-SM-4DXSI 60-69 years, male 17.4
GTEX-14ABY-0726-SM-5Q5DF 50-59 years, male 17.2
GTEX-13N2G-1826-SM-5KM1I 60-69 years, male 17.1
GTEX-11NSD-0826-SM-5986S 20-29 years, male 17.0
GTEX-111FC-2026-SM-5GZYO 60-69 years, male 16.7
GTEX-132NY-2826-SM-5P9G2 60-69 years, male 16.7
GTEX-XOTO-2826-SM-4B65I 50-59 years, male 16.7
GTEX-13OW8-0426-SM-5J2NR 60-69 years, male 16.4
GTEX-13G51-2326-SM-5LZXV 60-69 years, male 15.9
GTEX-RM2N-1126-SM-48FCY 50-59 years, male 15.9
GTEX-144GM-0826-SM-5O98R 20-29 years, male 15.4
GTEX-OOBJ-2026-SM-3NB1R 60-69 years, male 15.4
GTEX-U4B1-1426-SM-4DXTX 40-49 years, male 15.4
GTEX-XAJ8-0626-SM-47JY4 40-49 years, male 15.3
GTEX-13O61-1726-SM-5KM46 60-69 years, male 15.0
GTEX-1399R-0526-SM-5IJEF 30-39 years, male 14.9
GTEX-S95S-1026-SM-4B64M 60-69 years, male 14.9
GTEX-146FQ-1726-SM-5QGPX 30-39 years, male 14.8
GTEX-WFON-1626-SM-4LVMV 40-49 years, male 14.8
GTEX-13O21-1126-SM-5N9EV 50-59 years, male 14.7
GTEX-V955-1826-SM-4JBIL 60-69 years, male 14.7
GTEX-11WQK-2726-SM-5EQMU 50-59 years, male 14.6
GTEX-11ZUS-2126-SM-5N9E6 30-39 years, male 14.4
GTEX-14BMV-2326-SM-5RQJ4 50-59 years, male 14.4
GTEX-QV44-1526-SM-4R1KI 50-59 years, male 14.3
GTEX-12ZZZ-2026-SM-5LZWJ 60-69 years, male 14.2
GTEX-139T6-1526-SM-5P9G6 50-59 years, male 14.1
GTEX-QEG4-2226-SM-4R1JM 30-39 years, male 14.1
GTEX-OIZH-2026-SM-3NB1M 50-59 years, male 14.0
GTEX-QMRM-1426-SM-4R1K8 50-59 years, male 13.9
GTEX-T8EM-1826-SM-4DM7F 40-49 years, male 13.9
GTEX-WZTO-0926-SM-4PQZ3 40-49 years, male 13.8
GTEX-XQ3S-2526-SM-4BOOG 20-29 years, male 13.8
GTEX-YJ8A-1126-SM-5IFJU 20-29 years, male 13.7
GTEX-145LT-0626-SM-5O99E 40-49 years, male 13.6
GTEX-REY6-2126-SM-48FD9 60-69 years, male 13.4
GTEX-S33H-1826-SM-4AD65 30-39 years, male 13.4
GTEX-ZZ64-0926-SM-5E44L 20-29 years, male 13.3
GTEX-V1D1-1926-SM-4JBGX 50-59 years, male 13.2
GTEX-WFG8-1826-SM-4LVM4 20-29 years, male 13.2
GTEX-Y8E4-2126-SM-5RQHO 40-49 years, male 13.2
GTEX-117YW-1426-SM-5EGGO 50-59 years, male 12.9
GTEX-ZLFU-1726-SM-4WWBU 40-49 years, male 12.8
GTEX-111CU-1526-SM-5N9FS 50-59 years, male 12.7
GTEX-111YS-1726-SM-5GIED 60-69 years, male 12.7
GTEX-WK11-2626-SM-4OOSK 50-59 years, male 12.6
GTEX-PLZ6-1126-SM-3P5ZR 30-39 years, male 12.5
GTEX-WH7G-1726-SM-4LVKY 40-49 years, male 12.4
GTEX-1399T-1226-SM-5P9J5 60-69 years, male 12.1
GTEX-S4Q7-1026-SM-4AD75 20-29 years, male 12.1
GTEX-131XF-1926-SM-5DUW4 60-69 years, male 12.0
GTEX-SJXC-2026-SM-4DM6N 60-69 years, male 11.9
GTEX-QLQ7-1326-SM-4R1JY 60-69 years, male 11.8
GTEX-11TUW-2126-SM-5GU7B 60-69 years, male 11.7
GTEX-SNMC-0926-SM-4DM5U 20-29 years, male 11.7
GTEX-XPVG-2026-SM-4B65E 50-59 years, male 11.6
GTEX-ZPU1-2026-SM-57WFI 40-49 years, male 11.6
GTEX-11TT1-2026-SM-5EQM8 20-29 years, male 11.5
GTEX-U8XE-2526-SM-4E3IT 30-39 years, male 11.5
GTEX-148VJ-1826-SM-5Q5DV 70-79 years, male 11.3
GTEX-13FXS-2826-SM-5LZYC 50-59 years, male 11.1
GTEX-X5EB-1826-SM-4E3K8 40-49 years, male 11.1
GTEX-XMK1-1026-SM-4B65H 40-49 years, male 11.1
GTEX-ZY6K-1526-SM-5GZXE 50-59 years, male 11.1
GTEX-12C56-1326-SM-5FQSV 20-29 years, male 11.0
GTEX-YF7O-1926-SM-4W1YQ 50-59 years, male 10.9
GTEX-WOFM-0326-SM-4OOSL 20-29 years, male 10.8
GTEX-13RTJ-2126-SM-5S2PZ 60-69 years, male 10.7
GTEX-Y9LG-1826-SM-4VBQC 30-39 years, male 10.7
GTEX-XGQ4-1826-SM-4AT6F 50-59 years, male 10.6
GTEX-ZTX8-1026-SM-5EGHD 20-29 years, male 10.6
GTEX-NFK9-2226-SM-3MJGP 40-49 years, male 10.4
GTEX-Q2AI-1126-SM-48U19 40-49 years, male 10.4
GTEX-13FTW-1226-SM-5LZZ1 40-49 years, male 10.3
GTEX-11P7K-0626-SM-5985Z 30-39 years, male 10.2
GTEX-S3XE-1326-SM-4AD4H 50-59 years, male 9.9
GTEX-SNOS-1026-SM-4DM4Y 40-49 years, male 9.7
GTEX-WFG7-1826-SM-3GIL1 20-29 years, male 9.6
GTEX-117YX-1526-SM-5H12T 50-59 years, male 9.4
GTEX-ZUA1-2826-SM-59HLE 40-49 years, male 9.4
GTEX-11EQ9-1726-SM-5HL6U 30-39 years, male 9.3
GTEX-VJYA-1226-SM-3GIJ6 60-69 years, male 9.1
GTEX-YB5E-1826-SM-5IFI4 40-49 years, male 9.0
GTEX-QV31-1026-SM-4R1K3 30-39 years, male 8.8
GTEX-11P82-1126-SM-5BC5K 20-29 years, male 8.7
GTEX-U3ZM-0926-SM-4DXSW 40-49 years, male 8.5
GTEX-12BJ1-1226-SM-5LUAE 60-69 years, male 8.2
GTEX-132QS-1126-SM-5P9GC 60-69 years, male 8.1
GTEX-ZDYS-1226-SM-5IJF3 50-59 years, male 8.1
GTEX-14C5O-2826-SM-5RQI6 60-69 years, male 7.9
GTEX-OOBK-2025-SM-3LK5S 40-49 years, male 7.9
GTEX-13111-1326-SM-5GCNO 50-59 years, male 7.8
GTEX-ZT9W-1626-SM-4YCDQ 50-59 years, male 7.7
GTEX-ZVP2-0826-SM-59HJ6 50-59 years, male 7.1
GTEX-12696-2226-SM-5EQ65 60-69 years, male 6.5
GTEX-14E6E-1126-SM-5S2R4 30-39 years, male 6.5
Show all

PROSTATE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

23.1

FANTOM5 sample id

Sample description

Tags Per Million

Prostate
Tags Per Million: 23.1
FF:10022-101D4 73,79,93 years, male 23.1

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The Human Protein Atlas project is funded
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