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TISSUE ATLAS PRIMARY DATA BREAST

GENE/PROTEIN

Antibody validation


Dictionary

Breast

BREAST - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:1.8TPM
GTEx:4.8RPKM
FANTOM5:20.2Tags Per Million

BREAST - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Adipocytes:Low
Glandular cells:High
Myoepithelial cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA007982

 

Antibody HPA011933

 

Adipocytes

Low   Not detected  

Glandular cells

High   Not detected  

Myoepithelial cells

Medium   Not detected  
   
   

BREAST - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

1.8

overview Female, age 52 Sample 1
TPM: 2.9
Cell types%
Glandular cells: 15
Adipocytes: 5
Other cell types: 80
overview Female, age 80 Sample 2
TPM: 2.5
Cell types%
Glandular cells: 5
Adipocytes: 15
Other cell types: 80
overview Female, age 47 Sample 3
TPM: 0.8
Cell types%
Glandular cells: 5
Adipocytes: 5
Other cell types: 90
overview Female, age 38 Sample 4
TPM: 1
Cell types%
Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

4.8

GTEx sample id

Sample description

RPKM

Breast - Mammary Tissue
RPKM: 4.8
Samples: 214

Max RPKM: 33.5
Min RPKM: 0.0
Std RPKM: 6.5
Median RPKM: 2.3
GTEX-UTHO-1026-SM-3GAF7 60-69 years, male 33.5
GTEX-R53T-1526-SM-48FEK 50-59 years, female 29.7
GTEX-XGQ4-0926-SM-4AT4U 50-59 years, male 28.0
GTEX-11DXZ-1926-SM-5GZZL 50-59 years, male 27.3
GTEX-117YX-1426-SM-5H12H 50-59 years, male 26.8
GTEX-11P82-1326-SM-5HL62 20-29 years, male 24.7
GTEX-PSDG-1626-SM-48TCQ 50-59 years, male 24.5
GTEX-ZAB4-2526-SM-5HL8M 40-49 years, male 24.4
GTEX-12KS4-0126-SM-5Q5A5 30-39 years, male 24.2
GTEX-144GM-0926-SM-5O994 20-29 years, male 21.9
GTEX-Y8E4-1626-SM-5S2MW 40-49 years, male 21.0
GTEX-ZQG8-0726-SM-5P9H9 60-69 years, female 18.0
GTEX-QMRM-1626-SM-4R1KV 50-59 years, male 17.4
GTEX-XMK1-1126-SM-4IHJ8 40-49 years, male 17.0
GTEX-YB5K-1626-SM-5IFIN 40-49 years, female 16.2
GTEX-REY6-2426-SM-48FF5 60-69 years, male 15.8
GTEX-11ZTT-2326-SM-5EQLG 60-69 years, female 15.7
GTEX-YB5E-1726-SM-5IFJ3 40-49 years, male 15.0
GTEX-T6MO-0326-SM-32QOK 40-49 years, female 14.8
GTEX-ZPIC-1126-SM-5BC7F 40-49 years, female 14.8
GTEX-12BJ1-1826-SM-5HL9N 60-69 years, male 14.7
GTEX-TKQ2-1826-SM-33HB2 50-59 years, male 14.7
GTEX-ZDYS-1126-SM-5K7UB 50-59 years, male 14.4
GTEX-11NSD-0926-SM-5N9DR 20-29 years, male 13.1
GTEX-145ME-1526-SM-5Q5F2 40-49 years, female 13.1
GTEX-ZLFU-2126-SM-4WWEV 40-49 years, male 12.2
GTEX-13FTX-1126-SM-5N9EN 20-29 years, female 12.0
GTEX-WFON-1826-SM-3GILG 40-49 years, male 11.9
GTEX-ZYT6-0126-SM-5E45J 30-39 years, male 11.9
GTEX-Y5V6-2126-SM-4WWFX 60-69 years, male 11.3
GTEX-139T6-1626-SM-5PNYZ 50-59 years, male 11.1
GTEX-X4XY-0926-SM-4E3JD 60-69 years, male 10.7
GTEX-14E6E-1326-SM-5S2NR 30-39 years, male 10.2
GTEX-S33H-0326-SM-4AD6N 30-39 years, male 9.9
GTEX-U3ZN-1926-SM-4DXSG 30-39 years, female 9.5
GTEX-ZA64-1526-SM-5CVMD 20-29 years, male 9.3
GTEX-ZT9W-2026-SM-51MRA 50-59 years, male 9.1
GTEX-TML8-1226-SM-32QON 40-49 years, female 9.0
GTEX-WY7C-2726-SM-3NB3P 50-59 years, male 8.5
GTEX-ZQUD-1926-SM-51MSA 30-39 years, male 8.2
GTEX-13O61-1826-SM-5KM4I 60-69 years, male 8.0
GTEX-S4UY-0726-SM-4AD6X 40-49 years, female 7.8
GTEX-13FTW-1426-SM-5LZWZ 40-49 years, male 7.6
GTEX-YEC3-1026-SM-5IFI5 50-59 years, male 7.5
GTEX-13CF3-2126-SM-5IFJP 60-69 years, female 6.7
GTEX-QEL4-2126-SM-447AE 50-59 years, male 6.7
GTEX-U412-1826-SM-4DXTJ 60-69 years, male 6.7
GTEX-11I78-2226-SM-5PNYA 50-59 years, female 6.5
GTEX-11P81-1926-SM-5BC53 30-39 years, female 6.3
GTEX-Y114-2026-SM-4TT7L 50-59 years, female 6.3
GTEX-ZDTT-2126-SM-5S2OJ 60-69 years, male 6.3
GTEX-ZYWO-2326-SM-5GZY4 40-49 years, female 6.3
GTEX-R55D-0826-SM-48FEA 50-59 years, male 6.0
GTEX-132NY-0826-SM-5K7Y7 60-69 years, male 5.9
GTEX-XQ3S-1326-SM-4BOPQ 20-29 years, male 5.9
GTEX-1399U-1826-SM-5PNZ1 50-59 years, female 5.8
GTEX-YFCO-1826-SM-4W1YH 40-49 years, male 5.8
GTEX-13PVQ-1026-SM-5KM3M 50-59 years, male 5.6
GTEX-SE5C-2126-SM-4BRUJ 40-49 years, female 5.6
GTEX-S4Q7-1126-SM-4AD6R 20-29 years, male 5.4
GTEX-11ZUS-0826-SM-5FQUY 30-39 years, male 5.3
GTEX-XV7Q-2326-SM-4BRVZ 40-49 years, female 5.2
GTEX-ZZ64-1226-SM-5E43R 20-29 years, male 5.1
GTEX-11O72-2126-SM-5N9FO 40-49 years, male 4.6
GTEX-XYKS-1326-SM-4BRUN 60-69 years, female 4.5
GTEX-ZUA1-1526-SM-59HLS 40-49 years, male 4.5
GTEX-1211K-1926-SM-5EQLB 60-69 years, female 4.4
GTEX-U8XE-0826-SM-4E3J1 30-39 years, male 4.4
GTEX-ZDXO-0126-SM-5S2ND 60-69 years, male 4.4
GTEX-11ONC-2126-SM-5HL6E 60-69 years, male 4.2
GTEX-Y9LG-1426-SM-5IFJZ 30-39 years, male 4.2
GTEX-ZV6S-1826-SM-5NQ8D 40-49 years, female 4.2
GTEX-132AR-0826-SM-5EGK6 50-59 years, female 4.1
GTEX-XQ8I-2426-SM-4WAXY 50-59 years, male 4.0
GTEX-RUSQ-2026-SM-4GIAK 50-59 years, male 3.9
GTEX-14AS3-1626-SM-5S2OY 40-49 years, female 3.7
GTEX-1117F-2826-SM-5GZXL 60-69 years, female 3.6
GTEX-133LE-1726-SM-5K7VQ 20-29 years, female 3.5
GTEX-13W3W-1226-SM-5LU4H 60-69 years, female 3.5
GTEX-11EQ9-1826-SM-5Q5AJ 30-39 years, male 3.3
GTEX-TKQ1-0226-SM-33HB5 30-39 years, male 3.3
GTEX-YJ8O-2226-SM-5IFHW 40-49 years, female 3.3
GTEX-13N1W-0626-SM-5MR4U 70-79 years, male 3.2
GTEX-145MN-1926-SM-5SIAI 30-39 years, male 3.2
GTEX-ZVT4-1026-SM-57WC4 50-59 years, female 3.2
GTEX-117XS-1926-SM-5GICO 60-69 years, male 3.0
GTEX-1192X-2326-SM-5987X 50-59 years, male 3.0
GTEX-11DXY-2326-SM-5GICW 60-69 years, male 3.0
GTEX-13S86-1226-SM-5S2OA 40-49 years, male 3.0
GTEX-144GL-2026-SM-5LU3O 50-59 years, male 3.0
GTEX-ZVTK-0326-SM-51MRR 20-29 years, male 3.0
GTEX-11TUW-1826-SM-5BC5D 60-69 years, male 2.9
GTEX-145MO-0826-SM-5NQBL 60-69 years, male 2.9
GTEX-146FH-0826-SM-5SI8T 50-59 years, female 2.9
GTEX-Y3IK-2326-SM-4WWDT 50-59 years, female 2.8
GTEX-ZYW4-0826-SM-5GIDG 60-69 years, male 2.8
GTEX-X261-0626-SM-3NMD9 50-59 years, male 2.7
GTEX-Y5LM-1726-SM-4VDSX 40-49 years, female 2.7
GTEX-ZYFC-0826-SM-5E44K 50-59 years, male 2.7
GTEX-13N11-1726-SM-5J1OJ 50-59 years, female 2.6
GTEX-13OW8-0226-SM-5K7UP 60-69 years, male 2.6
GTEX-S32W-2026-SM-4AD6E 50-59 years, female 2.6
GTEX-T5JW-2026-SM-4DM63 20-29 years, female 2.4
GTEX-TMMY-0726-SM-33HBE 40-49 years, female 2.4
GTEX-11DZ1-0326-SM-5N9BN 50-59 years, male 2.3
GTEX-1313W-0826-SM-5EQ4T 50-59 years, female 2.3
GTEX-XUW1-2326-SM-4BOO5 50-59 years, female 2.3
GTEX-Y3I4-1526-SM-4TT7K 50-59 years, male 2.3
GTEX-ZV7C-1826-SM-5NQ83 50-59 years, male 2.3
GTEX-1122O-1226-SM-5H113 60-69 years, female 2.1
GTEX-11DXW-0626-SM-5N9ER 40-49 years, male 2.0
GTEX-Y5V5-2126-SM-4WWFO 60-69 years, female 2.0
GTEX-Y8LW-1626-SM-5IFHX 50-59 years, female 2.0
GTEX-UJHI-1426-SM-3DB9C 50-59 years, female 1.9
GTEX-WI4N-1426-SM-3LK7H 40-49 years, female 1.8
GTEX-ZLV1-1426-SM-4WWES 60-69 years, female 1.8
GTEX-11GSO-1926-SM-5A5K3 60-69 years, male 1.7
GTEX-12WSM-1726-SM-5BC6J 60-69 years, male 1.7
GTEX-WRHU-0326-SM-3MJFY 50-59 years, female 1.6
GTEX-11LCK-2426-SM-5HL5F 30-39 years, male 1.5
GTEX-111YS-1926-SM-5GICC 60-69 years, male 1.4
GTEX-QVJO-1826-SM-447C9 60-69 years, female 1.4
GTEX-WXYG-2226-SM-4E3IM 50-59 years, female 1.4
GTEX-12WSB-0626-SM-59HJO 60-69 years, female 1.3
GTEX-139T8-0826-SM-5L3DE 60-69 years, male 1.3
GTEX-139TU-0626-SM-5KM3X 60-69 years, male 1.3
GTEX-13D11-1026-SM-5IJFB 50-59 years, female 1.3
GTEX-XBED-1626-SM-47JYN 60-69 years, male 1.3
GTEX-ZF3C-2326-SM-5S2MZ 50-59 years, female 1.2
GTEX-12WSN-1326-SM-5GCNT 40-49 years, male 1.1
GTEX-1314G-1226-SM-5BC6D 30-39 years, male 1.1
GTEX-UPK5-2326-SM-3P5Z8 40-49 years, male 1.1
GTEX-X15G-1626-SM-3NMB3 50-59 years, female 1.1
GTEX-147F4-2826-SM-5NQBN 50-59 years, male 1.0
GTEX-RWS6-1926-SM-47JXY 60-69 years, female 1.0
GTEX-T2YK-2226-SM-32QPT 50-59 years, male 1.0
GTEX-ZVE2-1226-SM-5NQ8R 50-59 years, male 1.0
GTEX-ZZPU-0626-SM-5E43T 50-59 years, female 1.0
GTEX-12WSK-2226-SM-5GCO5 40-49 years, female 0.9
GTEX-14753-2426-SM-5LU8U 60-69 years, male 0.9
GTEX-S7SE-0826-SM-4AT4D 50-59 years, male 0.9
GTEX-XMD1-0826-SM-4AT52 60-69 years, male 0.9
GTEX-ZTTD-1026-SM-51MRD 50-59 years, male 0.9
GTEX-12ZZX-1126-SM-5EGKB 40-49 years, female 0.8
GTEX-13113-1726-SM-5GCOO 60-69 years, female 0.8
GTEX-13CF2-2026-SM-5K7VI 60-69 years, male 0.8
GTEX-QEG5-0726-SM-4R1JQ 20-29 years, male 0.8
GTEX-XUJ4-1926-SM-4BOOV 60-69 years, female 0.8
GTEX-Y111-2026-SM-4SOJA 50-59 years, male 0.8
GTEX-11NV4-2026-SM-5N9DG 60-69 years, male 0.7
GTEX-11OF3-1926-SM-59889 60-69 years, male 0.7
GTEX-11WQK-2426-SM-5GU5C 50-59 years, male 0.7
GTEX-WOFL-0826-SM-3MJG1 60-69 years, male 0.7
GTEX-ZF29-1926-SM-5S2P1 60-69 years, female 0.7
GTEX-ZWKS-2826-SM-5NQ74 30-39 years, male 0.7
GTEX-13W46-0826-SM-5LU3H 50-59 years, male 0.6
GTEX-T6MN-0726-SM-32PML 50-59 years, male 0.6
GTEX-1269C-2426-SM-5FQSN 60-69 years, female 0.5
GTEX-S4P3-1326-SM-4AD6V 50-59 years, female 0.5
GTEX-T2IS-1526-SM-32QPR 20-29 years, female 0.5
GTEX-ZVT2-1826-SM-5NQ8W 50-59 years, female 0.5
GTEX-ZVZQ-0826-SM-51MRF 60-69 years, female 0.5
GTEX-11EMC-2026-SM-5A5JV 60-69 years, female 0.4
GTEX-11TT1-2126-SM-5GU5Y 20-29 years, male 0.4
GTEX-13O3Q-2226-SM-5KM4O 50-59 years, male 0.4
GTEX-U3ZH-1426-SM-4DXSR 30-39 years, male 0.4
GTEX-VUSG-2226-SM-4KKZO 50-59 years, male 0.4
GTEX-W5X1-2326-SM-3GIL6 40-49 years, female 0.4
GTEX-WYJK-1326-SM-3NB2T 50-59 years, male 0.4
GTEX-WYVS-1726-SM-3NMAY 40-49 years, female 0.4
GTEX-XOT4-0726-SM-4GIAW 60-69 years, female 0.4
GTEX-ZXES-0826-SM-5E43C 30-39 years, female 0.4
GTEX-ZY6K-1626-SM-5GZWV 50-59 years, male 0.4
GTEX-11EI6-0626-SM-5985T 60-69 years, male 0.3
GTEX-131YS-0626-SM-5EGKL 60-69 years, female 0.3
GTEX-13OW5-2226-SM-5L3HC 60-69 years, male 0.3
GTEX-13PL6-2926-SM-5L3I2 40-49 years, female 0.3
GTEX-13QIC-2326-SM-5LU5N 60-69 years, female 0.3
GTEX-145LT-0726-SM-5S2VM 40-49 years, male 0.3
GTEX-Q2AG-0326-SM-48U1O 40-49 years, female 0.3
GTEX-XMD2-0926-SM-4WWEF 60-69 years, female 0.3
GTEX-ZF2S-2026-SM-5E461 50-59 years, female 0.3
GTEX-11EM3-1326-SM-5N9C6 20-29 years, female 0.2
GTEX-11WQC-1726-SM-5GU4W 60-69 years, male 0.2
GTEX-132Q8-1426-SM-5EGK7 60-69 years, male 0.2
GTEX-13NZ8-0126-SM-5IJCT 60-69 years, female 0.2
GTEX-QDT8-0626-SM-48TYW 30-39 years, female 0.2
GTEX-R3RS-0626-SM-48FE1 40-49 years, female 0.2
GTEX-RU72-0626-SM-46MUI 50-59 years, female 0.2
GTEX-S341-1526-SM-4AD6K 40-49 years, female 0.2
GTEX-T5JC-2126-SM-32PMO 20-29 years, male 0.2
GTEX-X4EP-2926-SM-3P5YQ 60-69 years, female 0.2
GTEX-ZC5H-2626-SM-5J2MG 40-49 years, female 0.2
GTEX-ZEX8-2226-SM-57WC6 50-59 years, male 0.2
GTEX-11GS4-2126-SM-5A5KR 60-69 years, male 0.1
GTEX-11PRG-0826-SM-5EQ6A 50-59 years, male 0.1
GTEX-131XW-0726-SM-5EGK3 50-59 years, female 0.1
GTEX-13FHO-0826-SM-5L3E8 60-69 years, male 0.1
GTEX-13FTY-2226-SM-5J1ND 40-49 years, female 0.1
GTEX-13NZB-2126-SM-5MR4Y 30-39 years, male 0.1
GTEX-R55F-1726-SM-2TF4R 50-59 years, male 0.1
GTEX-VJWN-0726-SM-3GIJ8 50-59 years, female 0.1
GTEX-WYBS-0926-SM-3NM94 60-69 years, female 0.1
GTEX-XUZC-1626-SM-4BRVP 30-39 years, female 0.1
GTEX-YFC4-1426-SM-5IFJG 40-49 years, female 0.1
GTEX-ZAJG-0626-SM-5HL8X 50-59 years, female 0.1
GTEX-ZU9S-1926-SM-5NQBP 30-39 years, male 0.1
GTEX-11P7K-0726-SM-5EGKX 30-39 years, male 0.0
GTEX-13NZ9-1026-SM-5MR5K 50-59 years, male 0.0
GTEX-13O3O-0826-SM-5K7WE 60-69 years, female 0.0
GTEX-13O3P-0826-SM-5L3DH 50-59 years, male 0.0
GTEX-14ABY-2126-SM-5QGQZ 50-59 years, male 0.0
GTEX-SIU7-1626-SM-4BRUK 50-59 years, male 0.0
GTEX-ZTX8-1226-SM-4YCE9 20-29 years, male 0.0
Show all

BREAST - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

20.2

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 20.2
FF:10080-102A8 77 years, female 20.2

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