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PSMA1
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TISSUE ATLAS PRIMARY DATA STOMACH

GENE/PROTEIN

Antibody validation


Dictionary

Stomach, lower
Stomach, upper

Tissue proteome

Stomach

STOMACH - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:52.1TPM
GTEx:9.1RPKM

STOMACH 1 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA037646

 

Antibody HPA043891

 

Antibody CAB033765

 

Glandular cells

Medium   Medium   Medium  
     
     
     

STOMACH 2 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA037646

 

Antibody HPA043891

 

Antibody CAB033765

 

Glandular cells

High   Medium   Medium  
     
     
     

STOMACH - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

52.1

overview Female, age 33 Sample 1
TPM: 44
Cell types%
Glandular cells: 60
Smooth muscle cells: 5
Other cell types: 35
N/A Male, age 82 Sample 2
TPM: 58.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 5
Other cell types: 30
overview Male, age 71 Sample 3
TPM: 55.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 5
Other cell types: 45
overview Female, age 66 Sample 4
TPM: 50.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 10
Other cell types: 40

STOMACH - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

9.1

GTEx sample id

Sample description

RPKM

Stomach
RPKM: 9.1
Samples: 193

Max RPKM: 17.9
Min RPKM: 4.9
Std RPKM: 2.2
Median RPKM: 8.9
GTEX-U4B1-1026-SM-4DXT1 40-49 years, male 17.9
GTEX-WHPG-0426-SM-4M1XW 50-59 years, male 15.7
GTEX-1339X-1426-SM-5K7YO 40-49 years, male 14.7
GTEX-146FH-2126-SM-5SI9U 50-59 years, female 14.0
GTEX-Y5LM-1326-SM-5RQIS 40-49 years, female 13.9
GTEX-ZV6S-0926-SM-57WGB 40-49 years, female 13.7
GTEX-132AR-2426-SM-5IFFD 50-59 years, female 13.6
GTEX-T8EM-1226-SM-4DM5J 40-49 years, male 13.3
GTEX-133LE-1326-SM-5IFGO 20-29 years, female 13.2
GTEX-11WQK-2626-SM-5EQ4K 50-59 years, male 13.1
GTEX-131XG-1226-SM-5EGH9 50-59 years, female 13.1
GTEX-ZYVF-2726-SM-5GID4 50-59 years, female 13.1
GTEX-11TT1-0726-SM-5GU5A 20-29 years, male 13.0
GTEX-ZTX8-0426-SM-59HLG 20-29 years, male 13.0
GTEX-13X6H-1626-SM-5Q5CT 50-59 years, female 12.8
GTEX-POMQ-0826-SM-3P61H 20-29 years, female 12.6
GTEX-QCQG-0526-SM-48U2A 50-59 years, female 12.6
GTEX-12WSJ-0926-SM-5P9JD 40-49 years, female 12.5
GTEX-PWN1-1526-SM-48TDA 40-49 years, female 12.3
GTEX-P4PQ-1526-SM-3NMCK 60-69 years, male 12.2
GTEX-P4QT-1526-SM-3NMCT 50-59 years, female 12.2
GTEX-R55C-1026-SM-48FCM 40-49 years, male 12.1
GTEX-11I78-1726-SM-5A5M3 50-59 years, female 12.0
GTEX-12BJ1-1726-SM-5HL9B 60-69 years, male 11.9
GTEX-13O61-1126-SM-5L3FI 60-69 years, male 11.9
GTEX-TMMY-1626-SM-4DXTY 40-49 years, female 11.7
GTEX-WFG7-1326-SM-4LMK1 20-29 years, male 11.5
GTEX-11DXX-1326-SM-5GIDZ 60-69 years, female 11.4
GTEX-13RTK-0226-SM-5RQHR 20-29 years, male 11.3
GTEX-PWOO-1226-SM-48TCO 40-49 years, female 11.3
GTEX-WH7G-1526-SM-4LVMX 40-49 years, male 11.3
GTEX-11VI4-0326-SM-5EQ6L 40-49 years, female 11.2
GTEX-S7SF-0626-SM-4AD4V 20-29 years, female 11.2
GTEX-XAJ8-0326-SM-47JYI 40-49 years, male 11.2
GTEX-R55G-1126-SM-48FDG 40-49 years, female 11.1
GTEX-QDVN-1226-SM-48TZ5 50-59 years, male 11.0
GTEX-YEC3-1426-101806-SM-5PNXX 50-59 years, male 10.9
GTEX-11P7K-1726-SM-5GU6F 30-39 years, male 10.8
GTEX-12C56-0526-SM-5FQST 20-29 years, male 10.8
GTEX-1399U-1626-SM-5P9J3 50-59 years, female 10.8
GTEX-R55D-1526-SM-48FEJ 50-59 years, male 10.8
GTEX-XUJ4-1226-SM-4BOPD 60-69 years, female 10.8
GTEX-Y114-1226-SM-4TT88 50-59 years, female 10.8
GTEX-13111-1226-SM-5GCNC 50-59 years, male 10.7
GTEX-TKQ1-0526-SM-4DXTG 30-39 years, male 10.7
GTEX-WFG8-1326-SM-4LVN3 20-29 years, male 10.7
GTEX-OIZH-1526-SM-3NB1J 50-59 years, male 10.6
GTEX-SIU7-1426-SM-4BRWT 50-59 years, male 10.6
GTEX-Q2AH-1126-SM-48TZM 40-49 years, male 10.5
GTEX-UPIC-1826-SM-4IHKC 20-29 years, female 10.5
GTEX-UJHI-1026-SM-4IHJP 50-59 years, female 10.4
GTEX-132QS-1826-SM-5IFFN 60-69 years, male 10.3
GTEX-1399S-1626-SM-5P9GI 30-39 years, female 10.3
GTEX-U8T8-1226-SM-4E3IH 60-69 years, male 10.3
GTEX-XBEW-1826-SM-4RTWX 40-49 years, male 10.3
GTEX-11EQ9-1226-SM-5987E 30-39 years, male 10.2
GTEX-131XE-2226-SM-5PNYX 50-59 years, male 10.2
GTEX-S4P3-0726-SM-4AD57 50-59 years, female 10.2
GTEX-XPVG-1526-SM-4B66C 50-59 years, male 10.2
GTEX-QDVJ-1426-SM-48U1Y 50-59 years, male 10.1
GTEX-ZPIC-2026-SM-57WG3 40-49 years, female 10.1
GTEX-14BMU-1126-SM-5RQJ8 20-29 years, female 10.0
GTEX-SNMC-0626-SM-4DM6H 20-29 years, male 10.0
GTEX-139D8-2326-SM-5IFGE 30-39 years, female 9.7
GTEX-13N1W-2026-SM-5K7YU 70-79 years, male 9.7
GTEX-11NUK-2426-SM-5BC4U 50-59 years, male 9.6
GTEX-145ME-1026-SM-5O9B4 40-49 years, female 9.6
GTEX-OHPK-1526-SM-3MJGM 50-59 years, female 9.6
GTEX-SNOS-0826-SM-4DM5N 40-49 years, male 9.6
GTEX-WEY5-1226-SM-4LMIQ 40-49 years, female 9.6
GTEX-13FTX-0726-SM-5N9BI 20-29 years, female 9.5
GTEX-13OVI-2426-SM-5KM4J 60-69 years, female 9.5
GTEX-13QBU-1126-SM-5LU44 40-49 years, female 9.5
GTEX-S341-0626-SM-4AD5T 40-49 years, female 9.5
GTEX-WFJO-1126-SM-4LVLZ 30-39 years, male 9.5
GTEX-XV7Q-1326-SM-4BRWM 40-49 years, female 9.5
GTEX-11EM3-1026-SM-5A5KL 20-29 years, female 9.4
GTEX-145MN-1326-SM-5NQ9S 30-39 years, male 9.4
GTEX-P4PP-1526-SM-3P61M 30-39 years, female 9.4
GTEX-1211K-1426-SM-5FQTF 60-69 years, female 9.3
GTEX-131XF-1226-SM-5HL8V 60-69 years, male 9.3
GTEX-146FR-2026-SM-5NQAI 60-69 years, female 9.3
GTEX-S4Q7-0726-SM-4AD5F 20-29 years, male 9.3
GTEX-V1D1-1726-SM-4JBHB 50-59 years, male 9.3
GTEX-ZP4G-1226-SM-4WWCJ 20-29 years, female 9.3
GTEX-UPK5-2126-SM-4JBJK 40-49 years, male 9.2
GTEX-111CU-0926-SM-5EGIK 50-59 years, male 9.1
GTEX-11P82-0726-SM-5PNYL 20-29 years, male 9.1
GTEX-13O3Q-2126-SM-5KM4C 50-59 years, male 9.1
GTEX-PLZ6-0826-SM-3P61K 30-39 years, male 9.1
GTEX-R53T-1226-SM-48FCT 50-59 years, female 9.1
GTEX-ZLFU-1326-SM-4WWET 40-49 years, male 9.1
GTEX-TKQ2-0926-SM-4DXU5 50-59 years, male 9.0
GTEX-Y9LG-1026-SM-5IFJN 30-39 years, male 9.0
GTEX-13U4I-2526-SM-5SI8Z 40-49 years, female 8.9
GTEX-OOBJ-1526-SM-3NB1Q 60-69 years, male 8.9
GTEX-QMRM-1126-SM-447BN 50-59 years, male 8.9
GTEX-RM2N-0826-SM-48FD3 50-59 years, male 8.9
GTEX-ZY6K-0726-SM-5A5L8 50-59 years, male 8.9
GTEX-ZZPU-1426-SM-5GZZ6 50-59 years, female 8.9
GTEX-13D11-2126-SM-5IFH2 50-59 years, female 8.8
GTEX-PWCY-0926-SM-48TD7 20-29 years, female 8.8
GTEX-Q2AI-0826-SM-48TZO 40-49 years, male 8.8
GTEX-T5JC-1926-SM-4DM6Q 20-29 years, male 8.8
GTEX-T5JW-0926-SM-4DM5K 20-29 years, female 8.8
GTEX-ZQUD-0826-SM-57WDQ 30-39 years, male 8.8
GTEX-13FTW-1726-SM-5KM2B 40-49 years, male 8.7
GTEX-NFK9-1526-SM-3LK7B 40-49 years, male 8.7
GTEX-ZZ64-0426-SM-5E43F 20-29 years, male 8.7
GTEX-QXCU-1926-SM-48FE4 50-59 years, male 8.6
GTEX-YFCO-0826-SM-5LUAG 40-49 years, male 8.6
GTEX-ZV7C-1626-SM-5NQ7E 50-59 years, male 8.6
GTEX-13PVQ-2126-SM-5L3FW 50-59 years, male 8.5
GTEX-144GN-1226-SM-5O991 50-59 years, male 8.5
GTEX-13CF3-1926-SM-5K7WF 60-69 years, female 8.4
GTEX-QV31-0626-SM-447C5 30-39 years, male 8.4
GTEX-Y3I4-1626-SM-4TT7W 50-59 years, male 8.4
GTEX-ZVZP-1726-SM-5GZWY 50-59 years, male 8.4
GTEX-145MO-2226-SM-5Q5BN 60-69 years, male 8.2
GTEX-117YX-1026-SM-5H11V 50-59 years, male 8.1
GTEX-O5YW-1526-SM-3MJGL 50-59 years, male 8.1
GTEX-QLQ7-0826-SM-447B3 60-69 years, male 8.1
GTEX-YEC4-1426-SM-5IFHS 40-49 years, male 8.1
GTEX-S4Z8-1226-SM-4AD6W 60-69 years, male 8.0
GTEX-Y3IK-1426-SM-4YCES 50-59 years, female 8.0
GTEX-RU1J-0526-SM-46MUT 20-29 years, female 7.9
GTEX-XBED-1226-SM-4AT5V 60-69 years, male 7.9
GTEX-12696-1726-SM-5EQLH 60-69 years, male 7.8
GTEX-12WSK-1426-SM-5CVNN 40-49 years, female 7.8
GTEX-13O21-0926-SM-5IFGT 50-59 years, male 7.8
GTEX-WRHK-0626-SM-4MVOE 20-29 years, female 7.8
GTEX-XQ8I-2026-SM-4BOOL 50-59 years, male 7.8
GTEX-ZT9W-1526-SM-4YCDE 50-59 years, male 7.8
GTEX-12WSD-2326-SM-59HKQ 60-69 years, female 7.7
GTEX-S95S-0826-SM-4B64N 60-69 years, male 7.7
GTEX-YJ8A-1526-SM-5P9FT 20-29 years, male 7.7
GTEX-ZDYS-1926-SM-5HL59 50-59 years, male 7.7
GTEX-ZE7O-3026-SM-51MS4 50-59 years, female 7.7
GTEX-117YW-2226-SM-5N9DB 50-59 years, male 7.6
GTEX-13113-0726-SM-5LZUF 60-69 years, female 7.6
GTEX-13FH7-1026-SM-5IJGF 50-59 years, female 7.6
GTEX-13S7M-1826-SM-5RQK6 60-69 years, female 7.6
GTEX-14BMV-2226-SM-5RQHX 50-59 years, male 7.6
GTEX-P78B-1826-SM-3P5YX 40-49 years, female 7.6
GTEX-WHWD-1426-SM-4OORU 50-59 years, male 7.6
GTEX-XUZC-0726-SM-4BOPH 30-39 years, female 7.6
GTEX-ZA64-0826-SM-5HL9U 20-29 years, male 7.6
GTEX-ZVT2-1626-SM-51MRC 50-59 years, female 7.6
GTEX-Q734-1026-SM-48U16 40-49 years, female 7.5
GTEX-S3XE-1026-SM-4AD4O 50-59 years, male 7.5
GTEX-ZXES-1426-SM-5NQ8S 30-39 years, female 7.5
GTEX-S4UY-1626-SM-4AD55 40-49 years, female 7.4
GTEX-U3ZN-2026-SM-4DXUC 30-39 years, female 7.4
GTEX-ZYY3-1726-SM-5EGH3 60-69 years, female 7.3
GTEX-111YS-1126-SM-5GZYQ 60-69 years, male 7.2
GTEX-1122O-1926-SM-5EGIQ 60-69 years, female 7.2
GTEX-OXRK-1626-SM-3NB17 50-59 years, female 7.2
GTEX-PW2O-1226-SM-48TCH 20-29 years, male 7.2
GTEX-T6MO-0726-SM-4DM58 40-49 years, female 7.2
GTEX-ZYFG-1326-SM-5GICJ 60-69 years, female 7.2
GTEX-13QJ3-2726-SM-5SI6L 50-59 years, male 7.1
GTEX-SUCS-0926-SM-4DM4Z 70-79 years, male 7.1
GTEX-RTLS-2626-SM-46MUJ 60-69 years, female 7.0
GTEX-Y8E4-1526-SM-4WWDI 40-49 years, male 7.0
GTEX-ZLV1-0826-SM-4WWEQ 60-69 years, female 7.0
GTEX-ZPU1-1626-SM-4WWB2 40-49 years, male 7.0
GTEX-QLQW-0726-SM-447AA 30-39 years, male 6.9
GTEX-WFON-1126-SM-4LVMA 40-49 years, male 6.9
GTEX-ZF2S-1426-SM-57WET 50-59 years, female 6.9
GTEX-V955-1326-SM-4JBHR 60-69 years, male 6.7
GTEX-W5WG-1726-SM-4LMI5 50-59 years, female 6.7
GTEX-Y8LW-0826-SM-4WWDO 50-59 years, female 6.7
GTEX-UJMC-1226-SM-4IHLI 50-59 years, male 6.6
GTEX-ZVP2-1626-SM-5GU5D 50-59 years, male 6.6
GTEX-13OW6-2526-SM-5IJEC 50-59 years, male 6.4
GTEX-144GM-1726-SM-5O9AS 20-29 years, male 6.4
GTEX-12WSG-2026-SM-5FQUU 50-59 years, female 6.3
GTEX-X15G-1126-SM-4PQZG 50-59 years, female 6.3
GTEX-145LT-1426-SM-5O9B3 40-49 years, male 6.2
GTEX-VJYA-1026-SM-4KL21 60-69 years, male 6.2
GTEX-PX3G-1526-SM-48U11 20-29 years, female 6.1
GTEX-1399R-1126-SM-5IFIO 30-39 years, male 6.0
GTEX-QV44-1226-SM-4R1KE 50-59 years, male 6.0
GTEX-11GSP-2126-SM-5HL5E 60-69 years, female 5.9
GTEX-RWS6-0926-SM-47JXE 60-69 years, female 5.8
GTEX-ZVT3-2126-SM-59HL2 60-69 years, female 5.7
GTEX-WZTO-2126-SM-4PQYW 40-49 years, male 5.6
GTEX-139YR-1926-SM-5LZXM 50-59 years, male 5.5
GTEX-XXEK-0826-SM-4BRWG 50-59 years, male 5.5
GTEX-11EI6-2426-SM-5PNVS 60-69 years, male 5.4
GTEX-ZAB4-1526-SM-5CVN7 40-49 years, male 5.3
GTEX-11NSD-1426-SM-5HL67 20-29 years, male 5.1
GTEX-Y5V6-1326-SM-4VDTF 60-69 years, male 4.9
Show all

STOMACH - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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The Human Protein Atlas project is funded
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