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Antibodies

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TISSUE ATLAS PRIMARY DATA ENDOMETRIUM

GENE/PROTEIN

Antibody validation


Dictionary

Endometrium

Tissue proteome

Endometrium

ENDOMETRIUM - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:9.3TPM
GTEx:3.2RPKM
FANTOM5:35.4Tags Per Million

ENDOMETRIUM 1 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in endometrial stroma:Low
Glandular cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA013349

 

Antibody CAB025994

 

Cells in endometrial stroma

Low   Low  

Glandular cells

High   Low  
   
   
   

ENDOMETRIUM 2 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in endometrial stroma:Not detected
Glandular cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA013349

 

Antibody CAB025994

 

Cells in endometrial stroma

Not detected   Not detected  

Glandular cells

High   Low  
   
   
   

ENDOMETRIUM - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

9.3

overview Female, age 34 Sample 1
TPM: 7.1
Cell types%
Glandular cells: 5
Stromal cells: 25
Smooth muscle cells: 65
Other cell types: 5
overview Female, age 56 Sample 2
TPM: 6.9
Cell types%
Glandular cells: 5
Stromal cells: 15
Smooth muscle cells: 75
Other cell types: 5
overview Female, age 40 Sample 3
TPM: 11.8
Cell types%
Glandular cells: 5
Stromal cells: 20
Smooth muscle cells: 70
Other cell types: 5
overview Female, age 60 Sample 4
TPM: 6.6
Cell types%
Glandular cells: 5
Stromal cells: 20
Smooth muscle cells: 75
Other cell types: 0
overview Female, age 83 Sample 5
TPM: 14.1
Cell types%
Glandular cells: 5
Stromal cells: 10
Smooth muscle cells: 80
Other cell types: 5

ENDOMETRIUM - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

3.2

GTEx sample id

Sample description

RPKM

Uterus - Endometrium
RPKM: 3.2
Samples: 14

Max RPKM: 4.4
Min RPKM: 2.5
Std RPKM: 0.5
Median RPKM: 3.2
GTEX-ZVT2-0426-SM-5E44S 50-59 years, female 4.4
GTEX-11EM3-1926-SM-5987U 20-29 years, female 4.1
GTEX-T6MO-1526-SM-4DM57 40-49 years, female 3.7
GTEX-ZTPG-2026-SM-5O999 20-29 years, female 3.5
GTEX-Y114-1826-SM-4TT87 50-59 years, female 3.4
GTEX-PWN1-2026-SM-48TD9 40-49 years, female 3.3
GTEX-R55G-1626-SM-48FF4 40-49 years, female 3.2
GTEX-U3ZN-0726-SM-4DXT5 30-39 years, female 3.2
GTEX-XUZC-0926-SM-4BOQF 30-39 years, female 3.0
GTEX-T5JW-1526-SM-4DM5E 20-29 years, female 2.8
GTEX-13QBU-1626-SM-5LU4S 40-49 years, female 2.6
GTEX-P78B-2526-SM-3P5ZY 40-49 years, female 2.5
GTEX-PX3G-2026-SM-48U1H 20-29 years, female 2.5
GTEX-S32W-1426-SM-4AD66 50-59 years, female 2.5
Show all

ENDOMETRIUM - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

35.4

FANTOM5 sample id

Sample description

Tags Per Million

Uterus
Tags Per Million: 35.4
FF:10100-102D1 23-63 years, female 35.4

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