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Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival, using best separation (to the left) and median separation (to the right). Patients were divided based on level of expression into one of the two groups "low" or "high". Below each Kaplan-Meier plot, corresponding expression cutoff, 5-year survival for patients with high expression, 5-year survival for patients with low expression and log-rank P value are displayed. For melanoma and glioma, 3-year survival is shown. The survival analysis is described in Assays & Annotation.
The tabs at the top of the survival analysis section can be used to switch between the different cancer subtypes.
Best separation
Median separation
Expression cutoffi
5-year survival for patients with higher expression than the expression cutoff.
102.1 FPKM
58.8 FPKM
3-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
62%
26%
3-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
30%
58%
Log-rank P valuei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
The Scatter Survival plot shows the clinical status for all individuals in the patient cohort, based on the same data as in the Kaplan-Meier plots. Living patients are shown in blue and deceased patients in red. The x-axis shows the expression levels (FPKM) of the investigated gene at the time of diagnosis and the y-axis shows the number of years of survival (living years) after the diagnosis.
Individual patient data is displayed in an interactive plot and can be filtered by clicking on one or several category buttons to the left. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be changed to "x linear" by clicking on the "x log" button on the left. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
Stage:
TCGA RNA samplesi
RNA-seq data is reported as median FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average FPKM
71.0
Number of samples
102
Samples
Sample
Description
FPKM
TCGA-XV-A9W5-01A
51 years, male, white, stage:i/ii nos
367.5
TCGA-EB-A41A-01A
90 years, male, white, stage:iic
252.8
TCGA-GN-A26C-01A
77 years, male, white, stage:iiic
208.2
TCGA-EB-A550-01A
75 years, female, white, stage:iic
205.1
TCGA-EB-A42Z-01A
49 years, male, asian, stage:iiic
196.2
TCGA-BF-A3DJ-01A
36 years, female, white, stage:iiib
192.5
TCGA-EB-A51B-01A
53 years, male, white, stage:iic
183.2
TCGA-BF-A1Q0-01A
80 years, male, white, stage:iic
179.9
TCGA-XV-A9W2-01A
81 years, male, white, stage:i
177.1
TCGA-FR-A2OS-01A
49 years, female, white, stage:iic
170.8
TCGA-FR-A3R1-01A
69 years, male, white, stage:iic
165.5
TCGA-BF-A1PV-01A
74 years, female, white, stage:iic
146.5
TCGA-ER-A196-01A
64 years, female, white, stage:iic
140.9
TCGA-BF-AAOU-01A
73 years, female, white, stage:iic
137.5
TCGA-XV-AAZV-01A
56 years, female, white, stage:ii
128.0
TCGA-EB-A85I-01A
66 years, male, white, stage:iic
126.1
TCGA-EB-A82B-01A
58 years, female, asian, stage:iii
123.8
TCGA-FS-A1ZN-01A
43 years, male, white, stage:iiia
123.3
TCGA-EB-A44P-01A
58 years, female, white, stage:iic
121.9
TCGA-EB-A24D-01A
72 years, male, white, stage:iiib
119.6
TCGA-EB-A299-01A
63 years, male, white, stage:iia
118.9
TCGA-EB-A3Y6-01A
56 years, female, white, stage:iic
111.6
TCGA-GN-A4U5-01A
61 years, female, white, stage:ib
106.7
TCGA-ER-A2NB-01A
57 years, male, white, stage:iiib
97.5
TCGA-EB-A5UM-01A
48 years, female, white, stage:iic
97.5
TCGA-EB-A5SE-01A
73 years, male, white, stage:iib
96.4
TCGA-BF-A5ES-01A
76 years, female, white, stage:iic
91.8
TCGA-EB-A82C-01A
70 years, female, asian, stage:iic
89.7
TCGA-EB-A4P0-01A
82 years, male, white, stage:iic
89.3
TCGA-XV-AAZW-01A
62 years, female, white, stage:ii
87.0
TCGA-EB-A3XE-01A
77 years, female, white, stage:iia
86.8
TCGA-EB-A44N-01A
59 years, male, white, stage:iic
86.0
TCGA-BF-A5EQ-01A
63 years, male, white, stage:iic
83.3
TCGA-EB-A3XF-01A
57 years, male, white, stage:iic
81.6
TCGA-BF-AAOX-01A
83 years, male, white, stage:iic
80.4
TCGA-EB-A4IQ-01A
42 years, female, asian, stage:iiib
79.4
TCGA-EB-A5VU-01A
56 years, male, asian, stage:iiib
78.5
TCGA-GN-A263-01A
24 years, male, white, stage:iv
77.9
TCGA-ER-A19K-01A
79 years, female, white, stage:iic
77.9
TCGA-EB-A24C-01A
56 years, male, white
77.3
TCGA-D3-A5GT-01A
43 years, male, white, stage:iiic
74.1
TCGA-GF-A769-01A
39 years, male, white, stage:iic
72.3
TCGA-BF-A1PU-01A
46 years, female, white, stage:iic
68.5
TCGA-BF-A3DN-01A
81 years, female, white, stage:iiic
67.8
TCGA-EB-A4XL-01A
56 years, female, white, stage:iic
66.4
TCGA-GF-A2C7-01A
48 years, male, white, stage:iic
66.0
TCGA-D9-A3Z4-01A
54 years, male, white, stage:iiic
63.3
TCGA-EB-A6QZ-01A
76 years, female, white, stage:iia
62.0
TCGA-EB-A6R0-01A
58 years, female, white, stage:iic
61.7
TCGA-EB-A4IS-01A
77 years, male, white, stage:iib
61.7
TCGA-EB-A6QY-01A
71 years, male, white, stage:iic
60.9
TCGA-BF-AAP2-01A
62 years, male, white, stage:iib
56.8
TCGA-EB-A57M-01A
56 years, male, asian, stage:iiib
56.6
TCGA-EB-A3XB-01A
63 years, male, white, stage:ii
55.0
TCGA-BF-A1PX-01A
56 years, male, white, stage:iiib
52.9
TCGA-D9-A4Z5-01A
68 years, male, white, stage:iib
52.8
TCGA-EB-A3XC-01A
74 years, male, white, stage:iic
47.8
TCGA-EB-A551-01A
78 years, female, white, stage:iiic
46.8
TCGA-XV-A9VZ-01A
90 years, female, white, stage:ii
46.5
TCGA-EB-A3HV-01A
37 years, male, white, stage:iic
46.5
TCGA-FR-A728-01A
54 years, female, white, stage:iiib
46.1
TCGA-GN-A8LN-01A
68 years, male, white, stage:iic
44.0
TCGA-FW-A5DX-01A
71 years, male, white, stage:iiic
40.9
TCGA-FR-A726-01A
90 years, male, white, stage:iic
39.8
TCGA-BF-A5EO-01A
65 years, male, white, stage:iic
39.3
TCGA-D9-A4Z3-01A
73 years, female, white, stage:iiic
35.3
TCGA-HR-A5NC-01A
90 years, female
34.7
TCGA-IH-A3EA-01A
61 years, male, white, stage:iic
33.8
TCGA-BF-A1PZ-01A
71 years, female, white, stage:iib
33.7
TCGA-BF-A5EP-01A
75 years, female, white, stage:iiic
33.7
TCGA-EB-A4OZ-01A
42 years, female, white, stage:iiic
31.5
TCGA-EB-A3XD-01A
53 years, female, white, stage:iic
28.6
TCGA-BF-AAP7-01A
76 years, female, white, stage:iic
28.4
TCGA-EB-A42Y-01A
73 years, female, asian, stage:iic
27.4
TCGA-ER-A194-01A
77 years, male, white
26.8
TCGA-EB-A1NK-01A
48 years, male, white, stage:iic
25.8
TCGA-EB-A5SF-01A
78 years, female, white, stage:iic
23.1
TCGA-EB-A97M-01A
66 years, male, white, stage:iic
17.7
TCGA-BF-A9VF-01A
77 years, male, white, stage:iic
16.7
TCGA-EB-A85J-01A
66 years, female, white, stage:iib
16.2
TCGA-ER-A42H-01A
77 years, male, white
15.8
TCGA-WE-A8K4-01A
85 years, male, white, stage:iib
15.3
TCGA-EB-A5FP-01A
65 years, female, white, stage:iv
13.2
TCGA-D9-A4Z2-01A
50 years, male, white, stage:iiic
12.5
TCGA-BF-AAP4-01A
61 years, male, white, stage:iic
11.7
TCGA-ER-A19T-01A
51 years, male, white, stage:iv
10.0
TCGA-EB-A431-01A
34 years, male, white, stage:iic
9.8
TCGA-BF-A3DL-01A
84 years, female, white, stage:iiib
9.3
TCGA-BF-AAP1-01A
86 years, male, white, stage:iic
8.9
TCGA-BF-A5ER-01A
63 years, male, white, stage:iic
8.3
TCGA-EB-A41B-01A
76 years, female, white, stage:iic
8.2
TCGA-XV-AAZY-01A
76 years, female, white, stage:iiic
8.0
TCGA-YG-AA3N-01A
67 years, male, stage:iic
7.2
TCGA-EB-A44O-01A
69 years, male, white, stage:iib
6.2
TCGA-ER-A2NF-01A
53 years, male, white, stage:iiib
6.1
TCGA-BF-AAP8-01A
58 years, male, white, stage:iic
6.0
TCGA-BF-A3DM-01A
63 years, male, white, stage:iia
4.7
TCGA-EB-A553-01A
62 years, male, white, stage:iic
4.2
TCGA-BF-AAP6-01A
55 years, male, white, stage:iii
4.0
TCGA-EB-A3Y7-01A
86 years, female, white, stage:iiib
2.7
TCGA-DA-A960-01A
73 years, male, white, stage:iib
1.5
TCGA-EB-A4OY-01A
65 years, female, white, stage:iiib
0.7
Show all
MELANOMA - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.