We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • HUMAN PATHOLOGY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
ANXA1
  • premium

    TISSUE

  • premium

    CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA STOMACH

GENE/PROTEIN

Antibody validation


Dictionary

Stomach, lower
Stomach, upper

Tissue proteome

Stomach

STOMACH - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:75.0TPM
GTEx:23.4RPKM

STOMACH 1 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA011271

 

Antibody HPA011272

 

Antibody CAB013023

 

Antibody CAB035987

 

Antibody CAB058693

 

Glandular cells

Not detected   Not detected   Medium   Not detected   Not detected  
         
         
         

STOMACH 2 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA011271

 

Antibody HPA011272

 

Antibody CAB013023

 

Antibody CAB035987

 

Antibody CAB058693

 

Glandular cells

Not detected   Not detected   Medium   Not detected   Not detected  
         
         
         

STOMACH - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

75.0

overview Female, age 33 Sample 1
TPM: 45.8
Cell types%
Glandular cells: 60
Smooth muscle cells: 5
Other cell types: 35
N/A Male, age 82 Sample 2
TPM: 63.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 5
Other cell types: 30
overview Male, age 71 Sample 3
TPM: 132
Cell types%
Glandular cells: 50
Smooth muscle cells: 5
Other cell types: 45
overview Female, age 66 Sample 4
TPM: 58.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 10
Other cell types: 40

STOMACH - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

23.4

GTEx sample id

Sample description

RPKM

Stomach
RPKM: 23.4
Samples: 193

Max RPKM: 127.5
Min RPKM: 3.2
Std RPKM: 21.3
Median RPKM: 16.4
GTEX-WFJO-1126-SM-4LVLZ 30-39 years, male 127.5
GTEX-13OVI-2426-SM-5KM4J 60-69 years, female 91.1
GTEX-S4P3-0726-SM-4AD57 50-59 years, female 87.2
GTEX-ZE7O-3026-SM-51MS4 50-59 years, female 87.0
GTEX-UPK5-2126-SM-4JBJK 40-49 years, male 85.1
GTEX-11EQ9-1226-SM-5987E 30-39 years, male 82.1
GTEX-WH7G-1526-SM-4LVMX 40-49 years, male 80.9
GTEX-11P82-0726-SM-5PNYL 20-29 years, male 78.0
GTEX-UJHI-1026-SM-4IHJP 50-59 years, female 76.2
GTEX-ZPIC-2026-SM-57WG3 40-49 years, female 75.9
GTEX-ZYVF-2726-SM-5GID4 50-59 years, female 72.8
GTEX-146FH-2126-SM-5SI9U 50-59 years, female 69.5
GTEX-13QJ3-2726-SM-5SI6L 50-59 years, male 69.1
GTEX-12C56-0526-SM-5FQST 20-29 years, male 65.5
GTEX-SIU7-1426-SM-4BRWT 50-59 years, male 63.8
GTEX-132AR-2426-SM-5IFFD 50-59 years, female 58.5
GTEX-13RTK-0226-SM-5RQHR 20-29 years, male 55.4
GTEX-Y8E4-1526-SM-4WWDI 40-49 years, male 52.5
GTEX-P4QT-1526-SM-3NMCT 50-59 years, female 50.6
GTEX-13111-1226-SM-5GCNC 50-59 years, male 50.2
GTEX-11WQK-2626-SM-5EQ4K 50-59 years, male 50.0
GTEX-R55C-1026-SM-48FCM 40-49 years, male 49.4
GTEX-R55G-1126-SM-48FDG 40-49 years, female 48.1
GTEX-SNOS-0826-SM-4DM5N 40-49 years, male 47.9
GTEX-11VI4-0326-SM-5EQ6L 40-49 years, female 46.5
GTEX-Y114-1226-SM-4TT88 50-59 years, female 45.7
GTEX-Y5LM-1326-SM-5RQIS 40-49 years, female 45.7
GTEX-1211K-1426-SM-5FQTF 60-69 years, female 45.2
GTEX-13O3Q-2126-SM-5KM4C 50-59 years, male 42.9
GTEX-ZTX8-0426-SM-59HLG 20-29 years, male 42.3
GTEX-Y3I4-1626-SM-4TT7W 50-59 years, male 42.0
GTEX-131XE-2226-SM-5PNYX 50-59 years, male 39.8
GTEX-ZVT3-2126-SM-59HL2 60-69 years, female 39.4
GTEX-13X6H-1626-SM-5Q5CT 50-59 years, female 39.0
GTEX-T8EM-1226-SM-4DM5J 40-49 years, male 38.5
GTEX-146FR-2026-SM-5NQAI 60-69 years, female 38.3
GTEX-11P7K-1726-SM-5GU6F 30-39 years, male 38.0
GTEX-13O61-1126-SM-5L3FI 60-69 years, male 37.1
GTEX-14BMV-2226-SM-5RQHX 50-59 years, male 37.1
GTEX-R55D-1526-SM-48FEJ 50-59 years, male 35.9
GTEX-13N1W-2026-SM-5K7YU 70-79 years, male 35.3
GTEX-WZTO-2126-SM-4PQYW 40-49 years, male 34.0
GTEX-11EI6-2426-SM-5PNVS 60-69 years, male 33.9
GTEX-11EM3-1026-SM-5A5KL 20-29 years, female 32.7
GTEX-12WSJ-0926-SM-5P9JD 40-49 years, female 32.4
GTEX-S4Z8-1226-SM-4AD6W 60-69 years, male 32.2
GTEX-ZV6S-0926-SM-57WGB 40-49 years, female 31.1
GTEX-WHPG-0426-SM-4M1XW 50-59 years, male 30.3
GTEX-TKQ1-0526-SM-4DXTG 30-39 years, male 29.0
GTEX-XAJ8-0326-SM-47JYI 40-49 years, male 28.9
GTEX-OIZH-1526-SM-3NB1J 50-59 years, male 28.7
GTEX-XBEW-1826-SM-4RTWX 40-49 years, male 28.5
GTEX-WEY5-1226-SM-4LMIQ 40-49 years, female 28.2
GTEX-TKQ2-0926-SM-4DXU5 50-59 years, male 28.0
GTEX-1339X-1426-SM-5K7YO 40-49 years, male 27.4
GTEX-P4PQ-1526-SM-3NMCK 60-69 years, male 27.3
GTEX-T5JC-1926-SM-4DM6Q 20-29 years, male 27.1
GTEX-ZYY3-1726-SM-5EGH3 60-69 years, female 26.6
GTEX-PLZ6-0826-SM-3P61K 30-39 years, male 26.5
GTEX-13QBU-1126-SM-5LU44 40-49 years, female 26.4
GTEX-NFK9-1526-SM-3LK7B 40-49 years, male 25.7
GTEX-139D8-2326-SM-5IFGE 30-39 years, female 25.4
GTEX-13FH7-1026-SM-5IJGF 50-59 years, female 24.8
GTEX-RU1J-0526-SM-46MUT 20-29 years, female 24.1
GTEX-133LE-1326-SM-5IFGO 20-29 years, female 24.0
GTEX-S4UY-1626-SM-4AD55 40-49 years, female 23.4
GTEX-U8T8-1226-SM-4E3IH 60-69 years, male 23.4
GTEX-1399U-1626-SM-5P9J3 50-59 years, female 23.2
GTEX-ZQUD-0826-SM-57WDQ 30-39 years, male 23.1
GTEX-T6MO-0726-SM-4DM58 40-49 years, female 22.6
GTEX-11GSP-2126-SM-5HL5E 60-69 years, female 22.4
GTEX-139YR-1926-SM-5LZXM 50-59 years, male 22.1
GTEX-S4Q7-0726-SM-4AD5F 20-29 years, male 21.4
GTEX-QCQG-0526-SM-48U2A 50-59 years, female 20.9
GTEX-QXCU-1926-SM-48FE4 50-59 years, male 20.9
GTEX-12BJ1-1726-SM-5HL9B 60-69 years, male 20.2
GTEX-U4B1-1026-SM-4DXT1 40-49 years, male 20.2
GTEX-YEC3-1426-101806-SM-5PNXX 50-59 years, male 20.1
GTEX-145MO-2226-SM-5Q5BN 60-69 years, male 20.0
GTEX-YJ8A-1526-SM-5P9FT 20-29 years, male 19.6
GTEX-Y9LG-1026-SM-5IFJN 30-39 years, male 19.5
GTEX-ZZPU-1426-SM-5GZZ6 50-59 years, female 19.0
GTEX-PWCY-0926-SM-48TD7 20-29 years, female 18.8
GTEX-XV7Q-1326-SM-4BRWM 40-49 years, female 18.6
GTEX-XPVG-1526-SM-4B66C 50-59 years, male 18.3
GTEX-UPIC-1826-SM-4IHKC 20-29 years, female 18.1
GTEX-131XG-1226-SM-5EGH9 50-59 years, female 17.6
GTEX-POMQ-0826-SM-3P61H 20-29 years, female 17.6
GTEX-13CF3-1926-SM-5K7WF 60-69 years, female 17.2
GTEX-13S7M-1826-SM-5RQK6 60-69 years, female 17.1
GTEX-145LT-1426-SM-5O9B3 40-49 years, male 17.0
GTEX-ZY6K-0726-SM-5A5L8 50-59 years, male 17.0
GTEX-12WSK-1426-SM-5CVNN 40-49 years, female 16.8
GTEX-117YX-1026-SM-5H11V 50-59 years, male 16.7
GTEX-OOBJ-1526-SM-3NB1Q 60-69 years, male 16.7
GTEX-RTLS-2626-SM-46MUJ 60-69 years, female 16.4
GTEX-S7SF-0626-SM-4AD4V 20-29 years, female 16.4
GTEX-Q734-1026-SM-48U16 40-49 years, female 16.0
GTEX-QMRM-1126-SM-447BN 50-59 years, male 16.0
GTEX-WRHK-0626-SM-4MVOE 20-29 years, female 15.3
GTEX-ZA64-0826-SM-5HL9U 20-29 years, male 15.2
GTEX-OHPK-1526-SM-3MJGM 50-59 years, female 14.7
GTEX-13U4I-2526-SM-5SI8Z 40-49 years, female 14.6
GTEX-QDVN-1226-SM-48TZ5 50-59 years, male 14.4
GTEX-QV31-0626-SM-447C5 30-39 years, male 14.2
GTEX-OXRK-1626-SM-3NB17 50-59 years, female 14.1
GTEX-SNMC-0626-SM-4DM6H 20-29 years, male 14.1
GTEX-12WSD-2326-SM-59HKQ 60-69 years, female 13.9
GTEX-ZZ64-0426-SM-5E43F 20-29 years, male 13.8
GTEX-XUJ4-1226-SM-4BOPD 60-69 years, female 13.7
GTEX-WHWD-1426-SM-4OORU 50-59 years, male 13.6
GTEX-ZF2S-1426-SM-57WET 50-59 years, female 13.5
GTEX-11NUK-2426-SM-5BC4U 50-59 years, male 12.8
GTEX-O5YW-1526-SM-3MJGL 50-59 years, male 12.5
GTEX-PW2O-1226-SM-48TCH 20-29 years, male 12.5
GTEX-117YW-2226-SM-5N9DB 50-59 years, male 12.3
GTEX-V955-1326-SM-4JBHR 60-69 years, male 12.2
GTEX-WFG7-1326-SM-4LMK1 20-29 years, male 11.7
GTEX-P78B-1826-SM-3P5YX 40-49 years, female 11.5
GTEX-ZLV1-0826-SM-4WWEQ 60-69 years, female 11.2
GTEX-V1D1-1726-SM-4JBHB 50-59 years, male 11.1
GTEX-U3ZN-2026-SM-4DXUC 30-39 years, female 11.0
GTEX-14BMU-1126-SM-5RQJ8 20-29 years, female 10.9
GTEX-111CU-0926-SM-5EGIK 50-59 years, male 10.8
GTEX-111YS-1126-SM-5GZYQ 60-69 years, male 10.6
GTEX-11DXX-1326-SM-5GIDZ 60-69 years, female 10.6
GTEX-11TT1-0726-SM-5GU5A 20-29 years, male 10.6
GTEX-13D11-2126-SM-5IFH2 50-59 years, female 10.6
GTEX-ZXES-1426-SM-5NQ8S 30-39 years, female 10.6
GTEX-13PVQ-2126-SM-5L3FW 50-59 years, male 10.5
GTEX-Y5V6-1326-SM-4VDTF 60-69 years, male 10.2
GTEX-SUCS-0926-SM-4DM4Z 70-79 years, male 9.9
GTEX-13OW6-2526-SM-5IJEC 50-59 years, male 9.8
GTEX-Y3IK-1426-SM-4YCES 50-59 years, female 9.8
GTEX-S341-0626-SM-4AD5T 40-49 years, female 9.7
GTEX-12WSG-2026-SM-5FQUU 50-59 years, female 9.6
GTEX-131XF-1226-SM-5HL8V 60-69 years, male 9.6
GTEX-13O21-0926-SM-5IFGT 50-59 years, male 9.6
GTEX-PWN1-1526-SM-48TDA 40-49 years, female 9.1
GTEX-Q2AH-1126-SM-48TZM 40-49 years, male 9.1
GTEX-13FTW-1726-SM-5KM2B 40-49 years, male 9.0
GTEX-145ME-1026-SM-5O9B4 40-49 years, female 8.9
GTEX-QLQ7-0826-SM-447B3 60-69 years, male 8.9
GTEX-W5WG-1726-SM-4LMI5 50-59 years, female 8.7
GTEX-132QS-1826-SM-5IFFN 60-69 years, male 8.6
GTEX-YEC4-1426-SM-5IFHS 40-49 years, male 8.4
GTEX-TMMY-1626-SM-4DXTY 40-49 years, female 8.3
GTEX-1399R-1126-SM-5IFIO 30-39 years, male 8.2
GTEX-ZP4G-1226-SM-4WWCJ 20-29 years, female 8.1
GTEX-QV44-1226-SM-4R1KE 50-59 years, male 8.0
GTEX-ZVZP-1726-SM-5GZWY 50-59 years, male 8.0
GTEX-QDVJ-1426-SM-48U1Y 50-59 years, male 7.8
GTEX-QLQW-0726-SM-447AA 30-39 years, male 7.7
GTEX-S3XE-1026-SM-4AD4O 50-59 years, male 7.7
GTEX-11I78-1726-SM-5A5M3 50-59 years, female 7.6
GTEX-R53T-1226-SM-48FCT 50-59 years, female 7.6
GTEX-WFG8-1326-SM-4LVN3 20-29 years, male 7.6
GTEX-RM2N-0826-SM-48FD3 50-59 years, male 7.3
GTEX-1122O-1926-SM-5EGIQ 60-69 years, female 7.0
GTEX-144GN-1226-SM-5O991 50-59 years, male 7.0
GTEX-XQ8I-2026-SM-4BOOL 50-59 years, male 6.8
GTEX-ZVP2-1626-SM-5GU5D 50-59 years, male 6.7
GTEX-XUZC-0726-SM-4BOPH 30-39 years, female 6.6
GTEX-ZAB4-1526-SM-5CVN7 40-49 years, male 6.6
GTEX-ZV7C-1626-SM-5NQ7E 50-59 years, male 6.5
GTEX-YFCO-0826-SM-5LUAG 40-49 years, male 6.4
GTEX-13113-0726-SM-5LZUF 60-69 years, female 6.3
GTEX-XBED-1226-SM-4AT5V 60-69 years, male 6.3
GTEX-Q2AI-0826-SM-48TZO 40-49 years, male 6.1
GTEX-T5JW-0926-SM-4DM5K 20-29 years, female 6.1
GTEX-PWOO-1226-SM-48TCO 40-49 years, female 6.0
GTEX-XXEK-0826-SM-4BRWG 50-59 years, male 6.0
GTEX-WFON-1126-SM-4LVMA 40-49 years, male 5.9
GTEX-1399S-1626-SM-5P9GI 30-39 years, female 5.7
GTEX-145MN-1326-SM-5NQ9S 30-39 years, male 5.7
GTEX-ZVT2-1626-SM-51MRC 50-59 years, female 5.7
GTEX-ZYFG-1326-SM-5GICJ 60-69 years, female 5.4
GTEX-ZLFU-1326-SM-4WWET 40-49 years, male 5.3
GTEX-11NSD-1426-SM-5HL67 20-29 years, male 5.2
GTEX-Y8LW-0826-SM-4WWDO 50-59 years, female 5.2
GTEX-S95S-0826-SM-4B64N 60-69 years, male 5.0
GTEX-ZT9W-1526-SM-4YCDE 50-59 years, male 4.9
GTEX-P4PP-1526-SM-3P61M 30-39 years, female 4.8
GTEX-VJYA-1026-SM-4KL21 60-69 years, male 4.8
GTEX-ZPU1-1626-SM-4WWB2 40-49 years, male 4.6
GTEX-144GM-1726-SM-5O9AS 20-29 years, male 4.3
GTEX-UJMC-1226-SM-4IHLI 50-59 years, male 4.2
GTEX-PX3G-1526-SM-48U11 20-29 years, female 4.1
GTEX-RWS6-0926-SM-47JXE 60-69 years, female 4.1
GTEX-ZDYS-1926-SM-5HL59 50-59 years, male 3.9
GTEX-X15G-1126-SM-4PQZG 50-59 years, female 3.7
GTEX-12696-1726-SM-5EQLH 60-69 years, male 3.2
GTEX-13FTX-0726-SM-5N9BI 20-29 years, female 3.2
Show all

STOMACH - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.