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TISSUE ATLAS SMALL INTESTINE

GENE/PROTEIN

Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:3.7TPM
GTEx:2.8RPKM
FANTOM5:2.3Tags Per Million

SMALL INTESTINE - Annotated protein expression

Pending normal tissue analysis


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

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Average TPM

3.7

overview Male, age 65 Sample 1
TPM: 2.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39 Sample 2
TPM: 3.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68 Sample 3
TPM: 4.2
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85 Sample 4
TPM: 4.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

2.8

GTEx sample id

Sample description

RPKM

Small Intestine - Terminal Ileum
RPKM: 2.8
Samples: 88

Max RPKM: 10.7
Min RPKM: 0.2
Std RPKM: 1.8
Median RPKM: 2.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 10.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 8.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 6.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 6.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 5.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 5.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 5.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 5.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 5.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 5.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 4.9
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 4.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 4.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 4.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 4.3
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 4.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 4.1
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 4.0
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 3.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 3.8
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 3.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 3.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 3.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 3.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 3.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 3.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 3.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 3.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 3.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 3.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 3.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 3.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 3.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 3.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 2.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 2.9
GTEX-1192X-2526-SM-59868 50-59 years, male 2.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 2.8
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 2.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2.5
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 2.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 2.4
GTEX-ZYWO-1526-SM-5SIAL 40-49 years, female 2.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 2.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 2.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 2.2
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 2.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 2.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 2.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 1.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1.6
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 1.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 1.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 1.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1.0
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 0.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 0.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 0.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 0.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 0.8
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 0.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 0.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 0.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 0.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 0.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 0.2
Show all

SMALL INTESTINE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

2.3

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 2.3
FF:10024-101D6 15,40,85 years, mixed 2.3

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