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TISSUE ATLAS PRIMARY DATA STOMACH

GENE/PROTEIN

Antibody validation


Dictionary

Stomach, lower
Stomach, upper

Tissue proteome

Stomach

STOMACH - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:13.9TPM
GTEx:9.4RPKM

STOMACH 1 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA044914

 

Glandular cells

Not detected  
 
 
 

STOMACH 2 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA044914

 

Glandular cells

Low  
 
 
 

STOMACH - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

13.9

overview Female, age 33 Sample 1
TPM: 12
Cell types%
Glandular cells: 60
Smooth muscle cells: 5
Other cell types: 35
N/A Male, age 82 Sample 2
TPM: 17.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 5
Other cell types: 30
overview Male, age 71 Sample 3
TPM: 9.3
Cell types%
Glandular cells: 50
Smooth muscle cells: 5
Other cell types: 45
overview Female, age 66 Sample 4
TPM: 16.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 10
Other cell types: 40

STOMACH - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

9.4

GTEx sample id

Sample description

RPKM

Stomach
RPKM: 9.4
Samples: 193

Max RPKM: 73.7
Min RPKM: 1.5
Std RPKM: 8.9
Median RPKM: 6.6
GTEX-13QJ3-2726-SM-5SI6L 50-59 years, male 73.7
GTEX-ZE7O-3026-SM-51MS4 50-59 years, female 54.6
GTEX-UPK5-2126-SM-4JBJK 40-49 years, male 42.2
GTEX-11EI6-2426-SM-5PNVS 60-69 years, male 35.3
GTEX-146FH-2126-SM-5SI9U 50-59 years, female 33.6
GTEX-14BMV-2226-SM-5RQHX 50-59 years, male 31.1
GTEX-Y8E4-1526-SM-4WWDI 40-49 years, male 29.6
GTEX-ZYVF-2726-SM-5GID4 50-59 years, female 27.7
GTEX-13O3Q-2126-SM-5KM4C 50-59 years, male 26.3
GTEX-139D8-2326-SM-5IFGE 30-39 years, female 24.8
GTEX-TKQ2-0926-SM-4DXU5 50-59 years, male 24.4
GTEX-XV7Q-1326-SM-4BRWM 40-49 years, female 23.2
GTEX-13111-1226-SM-5GCNC 50-59 years, male 22.4
GTEX-ZPIC-2026-SM-57WG3 40-49 years, female 22.4
GTEX-13OVI-2426-SM-5KM4J 60-69 years, female 21.7
GTEX-146FR-2026-SM-5NQAI 60-69 years, female 21.7
GTEX-131XE-2226-SM-5PNYX 50-59 years, male 19.4
GTEX-139YR-1926-SM-5LZXM 50-59 years, male 19.4
GTEX-132AR-2426-SM-5IFFD 50-59 years, female 18.7
GTEX-13O61-1126-SM-5L3FI 60-69 years, male 18.7
GTEX-WHWD-1426-SM-4OORU 50-59 years, male 18.6
GTEX-UJHI-1026-SM-4IHJP 50-59 years, female 18.5
GTEX-145MO-2226-SM-5Q5BN 60-69 years, male 18.2
GTEX-S4P3-0726-SM-4AD57 50-59 years, female 17.8
GTEX-13N1W-2026-SM-5K7YU 70-79 years, male 17.7
GTEX-11VI4-0326-SM-5EQ6L 40-49 years, female 17.4
GTEX-11P7K-1726-SM-5GU6F 30-39 years, male 16.6
GTEX-POMQ-0826-SM-3P61H 20-29 years, female 15.9
GTEX-T5JC-1926-SM-4DM6Q 20-29 years, male 15.8
GTEX-WZTO-2126-SM-4PQYW 40-49 years, male 15.8
GTEX-XAJ8-0326-SM-47JYI 40-49 years, male 14.9
GTEX-13RTK-0226-SM-5RQHR 20-29 years, male 14.8
GTEX-R55G-1126-SM-48FDG 40-49 years, female 14.6
GTEX-P78B-1826-SM-3P5YX 40-49 years, female 14.1
GTEX-RU1J-0526-SM-46MUT 20-29 years, female 13.6
GTEX-1211K-1426-SM-5FQTF 60-69 years, female 13.5
GTEX-S7SF-0626-SM-4AD4V 20-29 years, female 13.4
GTEX-1399U-1626-SM-5P9J3 50-59 years, female 13.2
GTEX-WFJO-1126-SM-4LVLZ 30-39 years, male 13.2
GTEX-R55D-1526-SM-48FEJ 50-59 years, male 13.0
GTEX-11P82-0726-SM-5PNYL 20-29 years, male 12.7
GTEX-R55C-1026-SM-48FCM 40-49 years, male 12.6
GTEX-QMRM-1126-SM-447BN 50-59 years, male 12.5
GTEX-XBEW-1826-SM-4RTWX 40-49 years, male 12.4
GTEX-ZVT3-2126-SM-59HL2 60-69 years, female 12.3
GTEX-UPIC-1826-SM-4IHKC 20-29 years, female 12.1
GTEX-Y3I4-1626-SM-4TT7W 50-59 years, male 11.8
GTEX-PLZ6-0826-SM-3P61K 30-39 years, male 11.7
GTEX-OOBJ-1526-SM-3NB1Q 60-69 years, male 11.2
GTEX-RTLS-2626-SM-46MUJ 60-69 years, female 11.2
GTEX-SIU7-1426-SM-4BRWT 50-59 years, male 11.1
GTEX-ZTX8-0426-SM-59HLG 20-29 years, male 11.0
GTEX-12WSG-2026-SM-5FQUU 50-59 years, female 10.9
GTEX-ZAB4-1526-SM-5CVN7 40-49 years, male 10.9
GTEX-X15G-1126-SM-4PQZG 50-59 years, female 10.6
GTEX-13X6H-1626-SM-5Q5CT 50-59 years, female 10.3
GTEX-11EQ9-1226-SM-5987E 30-39 years, male 10.1
GTEX-11WQK-2626-SM-5EQ4K 50-59 years, male 10.1
GTEX-ZF2S-1426-SM-57WET 50-59 years, female 10.0
GTEX-S4Z8-1226-SM-4AD6W 60-69 years, male 9.9
GTEX-T8EM-1226-SM-4DM5J 40-49 years, male 9.8
GTEX-12WSD-2326-SM-59HKQ 60-69 years, female 9.7
GTEX-SNOS-0826-SM-4DM5N 40-49 years, male 9.7
GTEX-WRHK-0626-SM-4MVOE 20-29 years, female 9.6
GTEX-12C56-0526-SM-5FQST 20-29 years, male 9.3
GTEX-S4UY-1626-SM-4AD55 40-49 years, female 9.1
GTEX-S3XE-1026-SM-4AD4O 50-59 years, male 8.9
GTEX-13S7M-1826-SM-5RQK6 60-69 years, female 8.6
GTEX-TKQ1-0526-SM-4DXTG 30-39 years, male 8.6
GTEX-VJYA-1026-SM-4KL21 60-69 years, male 8.6
GTEX-XQ8I-2026-SM-4BOOL 50-59 years, male 8.6
GTEX-ZV6S-0926-SM-57WGB 40-49 years, female 8.6
GTEX-1339X-1426-SM-5K7YO 40-49 years, male 8.5
GTEX-NFK9-1526-SM-3LK7B 40-49 years, male 8.4
GTEX-Q734-1026-SM-48U16 40-49 years, female 8.4
GTEX-QLQ7-0826-SM-447B3 60-69 years, male 8.4
GTEX-WH7G-1526-SM-4LVMX 40-49 years, male 8.3
GTEX-OIZH-1526-SM-3NB1J 50-59 years, male 8.2
GTEX-V1D1-1726-SM-4JBHB 50-59 years, male 8.1
GTEX-13D11-2126-SM-5IFH2 50-59 years, female 7.9
GTEX-YJ8A-1526-SM-5P9FT 20-29 years, male 7.9
GTEX-145ME-1026-SM-5O9B4 40-49 years, female 7.8
GTEX-ZZPU-1426-SM-5GZZ6 50-59 years, female 7.8
GTEX-11NUK-2426-SM-5BC4U 50-59 years, male 7.7
GTEX-XPVG-1526-SM-4B66C 50-59 years, male 7.7
GTEX-ZVP2-1626-SM-5GU5D 50-59 years, male 7.7
GTEX-O5YW-1526-SM-3MJGL 50-59 years, male 7.6
GTEX-P4QT-1526-SM-3NMCT 50-59 years, female 7.4
GTEX-QDVN-1226-SM-48TZ5 50-59 years, male 7.4
GTEX-QV44-1226-SM-4R1KE 50-59 years, male 7.3
GTEX-13U4I-2526-SM-5SI8Z 40-49 years, female 7.2
GTEX-U3ZN-2026-SM-4DXUC 30-39 years, female 7.2
GTEX-117YX-1026-SM-5H11V 50-59 years, male 6.9
GTEX-13113-0726-SM-5LZUF 60-69 years, female 6.9
GTEX-PW2O-1226-SM-48TCH 20-29 years, male 6.9
GTEX-13FH7-1026-SM-5IJGF 50-59 years, female 6.8
GTEX-S341-0626-SM-4AD5T 40-49 years, female 6.6
GTEX-Y114-1226-SM-4TT88 50-59 years, female 6.6
GTEX-Y8LW-0826-SM-4WWDO 50-59 years, female 6.6
GTEX-11I78-1726-SM-5A5M3 50-59 years, female 6.4
GTEX-ZLFU-1326-SM-4WWET 40-49 years, male 6.4
GTEX-133LE-1326-SM-5IFGO 20-29 years, female 6.3
GTEX-P4PQ-1526-SM-3NMCK 60-69 years, male 6.3
GTEX-13PVQ-2126-SM-5L3FW 50-59 years, male 6.2
GTEX-QXCU-1926-SM-48FE4 50-59 years, male 6.2
GTEX-12WSJ-0926-SM-5P9JD 40-49 years, female 6.1
GTEX-WHPG-0426-SM-4M1XW 50-59 years, male 6.1
GTEX-Q2AH-1126-SM-48TZM 40-49 years, male 6.0
GTEX-TMMY-1626-SM-4DXTY 40-49 years, female 5.8
GTEX-ZY6K-0726-SM-5A5L8 50-59 years, male 5.7
GTEX-T6MO-0726-SM-4DM58 40-49 years, female 5.6
GTEX-111YS-1126-SM-5GZYQ 60-69 years, male 5.5
GTEX-132QS-1826-SM-5IFFN 60-69 years, male 5.5
GTEX-P4PP-1526-SM-3P61M 30-39 years, female 5.5
GTEX-R53T-1226-SM-48FCT 50-59 years, female 5.5
GTEX-S4Q7-0726-SM-4AD5F 20-29 years, male 5.5
GTEX-S95S-0826-SM-4B64N 60-69 years, male 5.5
GTEX-ZPU1-1626-SM-4WWB2 40-49 years, male 5.4
GTEX-ZYY3-1726-SM-5EGH3 60-69 years, female 5.3
GTEX-ZV7C-1626-SM-5NQ7E 50-59 years, male 5.2
GTEX-11GSP-2126-SM-5HL5E 60-69 years, female 5.1
GTEX-145MN-1326-SM-5NQ9S 30-39 years, male 5.1
GTEX-QV31-0626-SM-447C5 30-39 years, male 5.1
GTEX-V955-1326-SM-4JBHR 60-69 years, male 5.1
GTEX-XXEK-0826-SM-4BRWG 50-59 years, male 5.0
GTEX-XBED-1226-SM-4AT5V 60-69 years, male 4.9
GTEX-ZXES-1426-SM-5NQ8S 30-39 years, female 4.9
GTEX-11EM3-1026-SM-5A5KL 20-29 years, female 4.8
GTEX-PWCY-0926-SM-48TD7 20-29 years, female 4.8
GTEX-13OW6-2526-SM-5IJEC 50-59 years, male 4.7
GTEX-UJMC-1226-SM-4IHLI 50-59 years, male 4.7
GTEX-Y3IK-1426-SM-4YCES 50-59 years, female 4.7
GTEX-ZVZP-1726-SM-5GZWY 50-59 years, male 4.7
GTEX-131XF-1226-SM-5HL8V 60-69 years, male 4.6
GTEX-OXRK-1626-SM-3NB17 50-59 years, female 4.5
GTEX-ZZ64-0426-SM-5E43F 20-29 years, male 4.5
GTEX-13QBU-1126-SM-5LU44 40-49 years, female 4.4
GTEX-14BMU-1126-SM-5RQJ8 20-29 years, female 4.4
GTEX-YEC3-1426-101806-SM-5PNXX 50-59 years, male 4.4
GTEX-ZLV1-0826-SM-4WWEQ 60-69 years, female 4.4
GTEX-1399R-1126-SM-5IFIO 30-39 years, male 4.2
GTEX-RM2N-0826-SM-48FD3 50-59 years, male 4.2
GTEX-WEY5-1226-SM-4LMIQ 40-49 years, female 4.2
GTEX-1399S-1626-SM-5P9GI 30-39 years, female 4.0
GTEX-U4B1-1026-SM-4DXT1 40-49 years, male 4.0
GTEX-WFON-1126-SM-4LVMA 40-49 years, male 4.0
GTEX-YFCO-0826-SM-5LUAG 40-49 years, male 3.9
GTEX-U8T8-1226-SM-4E3IH 60-69 years, male 3.8
GTEX-1122O-1926-SM-5EGIQ 60-69 years, female 3.7
GTEX-Y5V6-1326-SM-4VDTF 60-69 years, male 3.7
GTEX-ZQUD-0826-SM-57WDQ 30-39 years, male 3.7
GTEX-ZYFG-1326-SM-5GICJ 60-69 years, female 3.7
GTEX-11DXX-1326-SM-5GIDZ 60-69 years, female 3.6
GTEX-11NSD-1426-SM-5HL67 20-29 years, male 3.6
GTEX-SUCS-0926-SM-4DM4Z 70-79 years, male 3.6
GTEX-Y9LG-1026-SM-5IFJN 30-39 years, male 3.6
GTEX-ZP4G-1226-SM-4WWCJ 20-29 years, female 3.6
GTEX-QLQW-0726-SM-447AA 30-39 years, male 3.5
GTEX-WFG8-1326-SM-4LVN3 20-29 years, male 3.5
GTEX-144GN-1226-SM-5O991 50-59 years, male 3.4
GTEX-QCQG-0526-SM-48U2A 50-59 years, female 3.3
GTEX-OHPK-1526-SM-3MJGM 50-59 years, female 3.2
GTEX-117YW-2226-SM-5N9DB 50-59 years, male 3.1
GTEX-12696-1726-SM-5EQLH 60-69 years, male 3.1
GTEX-QDVJ-1426-SM-48U1Y 50-59 years, male 3.1
GTEX-SNMC-0626-SM-4DM6H 20-29 years, male 3.1
GTEX-13CF3-1926-SM-5K7WF 60-69 years, female 3.0
GTEX-145LT-1426-SM-5O9B3 40-49 years, male 3.0
GTEX-12BJ1-1726-SM-5HL9B 60-69 years, male 2.9
GTEX-13FTW-1726-SM-5KM2B 40-49 years, male 2.9
GTEX-ZA64-0826-SM-5HL9U 20-29 years, male 2.9
GTEX-131XG-1226-SM-5EGH9 50-59 years, female 2.8
GTEX-RWS6-0926-SM-47JXE 60-69 years, female 2.8
GTEX-ZT9W-1526-SM-4YCDE 50-59 years, male 2.8
GTEX-ZDYS-1926-SM-5HL59 50-59 years, male 2.7
GTEX-ZVT2-1626-SM-51MRC 50-59 years, female 2.7
GTEX-111CU-0926-SM-5EGIK 50-59 years, male 2.6
GTEX-12WSK-1426-SM-5CVNN 40-49 years, female 2.6
GTEX-13FTX-0726-SM-5N9BI 20-29 years, female 2.6
GTEX-PWOO-1226-SM-48TCO 40-49 years, female 2.6
GTEX-YEC4-1426-SM-5IFHS 40-49 years, male 2.6
GTEX-PX3G-1526-SM-48U11 20-29 years, female 2.3
GTEX-XUJ4-1226-SM-4BOPD 60-69 years, female 2.3
GTEX-13O21-0926-SM-5IFGT 50-59 years, male 2.1
GTEX-144GM-1726-SM-5O9AS 20-29 years, male 2.0
GTEX-W5WG-1726-SM-4LMI5 50-59 years, female 1.9
GTEX-11TT1-0726-SM-5GU5A 20-29 years, male 1.8
GTEX-WFG7-1326-SM-4LMK1 20-29 years, male 1.8
GTEX-PWN1-1526-SM-48TDA 40-49 years, female 1.7
GTEX-XUZC-0726-SM-4BOPH 30-39 years, female 1.7
GTEX-Y5LM-1326-SM-5RQIS 40-49 years, female 1.7
GTEX-Q2AI-0826-SM-48TZO 40-49 years, male 1.6
GTEX-T5JW-0926-SM-4DM5K 20-29 years, female 1.5
Show all

STOMACH - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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