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TISSUE ATLAS PRIMARY DATA SALIVARY GLAND

GENE/PROTEIN

Antibody validation


Dictionary

Salivary gland

Tissue proteome

Salivary gland

SALIVARY GLAND - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:26.4TPM
GTEx:37.7RPKM
FANTOM5:92.6Tags Per Million

SALIVARY GLAND - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA001383

 

Antibody CAB000043

 

Antibody CAB020416

 

Antibody CAB062555

 

Glandular cells

Low   Not detected   Low   Not detected  
       
       
       

SALIVARY GLAND - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

26.4

overview Female, age 68 Sample 1
TPM: 37.6
Cell types%
Glandular cells: 45
Ductal cells: 25
Adipocytes: 5
Other cell types: 25
overview Male, age 60 Sample 2
TPM: 20.2
Cell types%
Glandular cells: 55
Ductal cells: 20
Adipocytes: 5
Endothelial cells: 5
Other cell types: 15
overview Female, age 21 Sample 3
TPM: 21.3
Cell types%
Glandular cells: 55
Ductal cells: 15
Adipocytes: 5
Endothelial cells: 5
Other cell types: 20

SALIVARY GLAND - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

37.7

GTEx sample id

Sample description

RPKM

Minor Salivary Gland
RPKM: 37.7
Samples: 57

Max RPKM: 61.6
Min RPKM: 16.8
Std RPKM: 10.1
Median RPKM: 38.8
GTEX-WFJO-2026-SM-4LVM3 30-39 years, male 61.6
GTEX-X261-2426-SM-4PQZU 50-59 years, male 56.5
GTEX-11P81-2026-SM-5P9GT 30-39 years, female 55.9
GTEX-1314G-2026-SM-5LZUM 30-39 years, male 51.7
GTEX-12WSL-2126-SM-5GCNG 50-59 years, male 51.2
GTEX-ZXG5-2826-SM-5NQ8T 60-69 years, male 50.9
GTEX-ZP4G-1926-SM-57WDZ 20-29 years, female 49.8
GTEX-ZPU1-2326-SM-57WEP 40-49 years, male 48.8
GTEX-11ZTS-3026-SM-5EQM7 60-69 years, female 48.4
GTEX-Y111-2626-SM-4TT24 50-59 years, male 48.1
GTEX-1117F-3026-SM-5GZYU 60-69 years, female 46.4
GTEX-13OVI-2326-SM-5KM47 60-69 years, female 44.7
GTEX-13113-1526-SM-5EGHV 60-69 years, female 44.6
GTEX-13JVG-2926-SM-5J2N9 60-69 years, male 44.5
GTEX-XMK1-2626-SM-4B65R 40-49 years, male 44.4
GTEX-13O21-1926-SM-5MR39 50-59 years, male 44.3
GTEX-13QJC-2326-SM-5Q5CD 60-69 years, female 43.7
GTEX-11P82-0926-SM-5986X 20-29 years, male 43.2
GTEX-YB5K-1726-SM-5IFIZ 40-49 years, female 43.2
GTEX-X5EB-1726-SM-4E3J7 40-49 years, male 43.1
GTEX-145ME-1626-SM-5RQI3 40-49 years, female 43.0
GTEX-146FR-1226-SM-5SIA7 60-69 years, female 41.8
GTEX-X15G-2126-SM-4PQZR 50-59 years, female 41.2
GTEX-11EQ9-2026-SM-5P9JI 30-39 years, male 40.9
GTEX-WOFM-2126-SM-4OOSR 20-29 years, male 40.5
GTEX-1339X-2326-SM-5HL5B 40-49 years, male 40.1
GTEX-XGQ4-2626-SM-4AT6B 50-59 years, male 39.7
GTEX-Y5V6-2226-SM-4VDTC 60-69 years, male 39.1
GTEX-13G51-2426-SM-5LZY8 60-69 years, male 38.8
GTEX-WYVS-2026-SM-4RGNS 40-49 years, female 38.7
GTEX-ZA64-1726-SM-5CVMF 20-29 years, male 37.3
GTEX-YF7O-2226-SM-5CVN8 50-59 years, male 37.2
GTEX-11NV4-1926-SM-5N9D4 60-69 years, male 36.7
GTEX-12WSN-2226-SM-5DUXT 40-49 years, male 36.5
GTEX-ZT9W-2126-SM-51MSF 50-59 years, male 35.9
GTEX-13VXT-1726-SM-5IFF5 20-29 years, female 34.1
GTEX-ZQG8-2126-SM-4YCF1 60-69 years, female 34.1
GTEX-X3Y1-1926-SM-4PQZO 40-49 years, male 34.0
GTEX-13OVL-2926-SM-5IFG3 50-59 years, male 33.6
GTEX-13NYB-2426-SM-5IFF4 40-49 years, male 32.9
GTEX-13111-2326-SM-5LZUQ 50-59 years, male 32.5
GTEX-14B4R-1426-SM-5Q5CG 30-39 years, male 30.7
GTEX-111FC-2926-SM-5GZY7 60-69 years, male 29.6
GTEX-1445S-2926-SM-5O993 60-69 years, male 28.6
GTEX-XV7Q-2426-SM-4BRV8 40-49 years, female 28.1
GTEX-Y3I4-1926-SM-4TT8L 50-59 years, male 28.0
GTEX-11ZTT-2226-SM-5CVLP 60-69 years, female 27.5
GTEX-Y5LM-1826-SM-4VDT9 40-49 years, female 27.2
GTEX-11TUW-2426-SM-5EQKB 60-69 years, male 26.9
GTEX-ZE7O-2926-SM-51MSG 50-59 years, female 24.4
GTEX-ZQUD-2126-SM-51MSY 30-39 years, male 23.4
GTEX-13NYC-2626-SM-5K7VN 60-69 years, male 22.8
GTEX-12WSM-1826-SM-5BC64 60-69 years, male 22.3
GTEX-131XF-2826-SM-5EGKH 60-69 years, male 21.1
GTEX-ZC5H-2726-SM-5KLZW 40-49 years, female 21.0
GTEX-13CF2-2426-SM-5LZYL 60-69 years, male 19.3
GTEX-11WQK-2926-SM-5EQKT 50-59 years, male 16.8
Show all

SALIVARY GLAND - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

92.6

FANTOM5 sample id

Sample description

Tags Per Million

Salivary gland
Tags Per Million: 92.6
FF:10093-102C3 16-60 years, mixed 92.6

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