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TISSUE ATLAS PRIMARY DATA SMALL INTESTINE

GENE/PROTEIN

Antibody validation


Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:12.2TPM
GTEx:22.8RPKM
FANTOM5:34.9Tags Per Million

SMALL INTESTINE - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB016075

 

Glandular cells

Low  
 
 
 

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

12.2

overview Male, age 65 Sample 1
TPM: 12
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39 Sample 2
TPM: 16.8
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68 Sample 3
TPM: 10.6
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85 Sample 4
TPM: 9.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

22.8

GTEx sample id

Sample description

RPKM

Small Intestine - Terminal Ileum
RPKM: 22.8
Samples: 88

Max RPKM: 139.1
Min RPKM: 3.6
Std RPKM: 20.1
Median RPKM: 18.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 139.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 101.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 78.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 74.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 66.5
GTEX-1192X-2526-SM-59868 50-59 years, male 50.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 43.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 37.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 36.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 35.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 33.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 33.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 32.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 31.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 31.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 29.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 27.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 26.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 26.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 25.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 25.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 24.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 24.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 24.3
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 24.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 23.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 23.4
GTEX-ZYWO-1526-SM-5SIAL 40-49 years, female 21.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 21.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 21.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 21.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 21.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 20.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 20.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 20.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 20.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 20.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 20.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 19.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 18.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 18.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 18.6
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 18.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 18.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 17.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 17.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 17.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 17.6
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 17.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 16.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 16.2
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 15.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 14.8
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 14.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 14.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 14.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 14.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 14.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 14.3
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 13.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 13.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 13.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 13.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 13.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 13.4
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 13.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 13.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 13.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 12.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 12.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 11.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 11.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 11.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 10.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 10.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 10.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 9.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 9.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 8.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 8.3
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 8.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 7.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 7.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 6.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 6.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 4.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 3.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 3.6
Show all

SMALL INTESTINE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

34.9

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 34.9
FF:10024-101D6 15,40,85 years, mixed 34.9

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.