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TISSUE ATLAS CEREBRAL CORTEX

GENE/PROTEIN

Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:36.9TPM
GTEx:15.0RPKM

CEREBRAL CORTEX - Annotated protein expression

Pending normal tissue analysis


CEREBRAL CORTEX - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

36.9

N/A Male, age 5 Sample 1
TPM: 31
overview Female, age 40 Sample 2
TPM: 46.7
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70 Sample 3
TPM: 33.2
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

15.0

GTEx sample id

Sample description

RPKM

Brain - Cortex
RPKM: 15.0
Samples: 114

Max RPKM: 44.4
Min RPKM: 7.1
Std RPKM: 5.1
Median RPKM: 13.4
GTEX-11TTK-2926-SM-5PNYP 60-69 years, female 44.4
GTEX-13NYC-2826-SM-5K7WR 60-69 years, male 35.1
GTEX-13NYS-3126-SM-5KLYV 60-69 years, male 32.1
GTEX-11OC5-0726-SM-5P9JK 60-69 years, male 25.9
GTEX-WWYW-3126-SM-3NB39 50-59 years, female 24.4
GTEX-11WQK-3026-SM-5EQL6 50-59 years, male 24.2
GTEX-11O72-2926-SM-5BC4V 40-49 years, male 23.4
GTEX-11OF3-2926-SM-5HL78 60-69 years, male 23.3
GTEX-1445S-3026-SM-5O9BR 60-69 years, male 23.1
GTEX-ZAJG-3126-SM-5HL9J 50-59 years, female 22.8
GTEX-X585-3026-SM-46MWF 50-59 years, male 22.7
GTEX-R55F-1326-SM-5S2V4 50-59 years, male 22.3
GTEX-144FL-3026-SM-5O99C 50-59 years, male 22.0
GTEX-WHSE-3026-SM-3P5ZH 20-29 years, male 20.8
GTEX-ZYFD-3026-SM-5E44C 50-59 years, male 20.7
GTEX-ZZPT-3026-SM-5GZXH 50-59 years, male 20.5
GTEX-13OVJ-2826-SM-5L3GW 50-59 years, female 19.7
GTEX-132Q8-3026-SM-5PNVG 60-69 years, male 18.5
GTEX-NPJ7-2726-SM-2I3FT 60-69 years, female 18.2
GTEX-NPJ8-1526-SM-2D7VU 40-49 years, male 18.1
GTEX-1192X-3126-SM-5N9BY 50-59 years, male 17.6
GTEX-OXRN-2426-SM-2I5EQ 50-59 years, male 17.3
GTEX-13FXS-3126-SM-5J2NN 50-59 years, male 16.8
GTEX-X4XX-3026-SM-3NMB2 60-69 years, male 16.7
GTEX-13FHO-3026-SM-5J1O9 60-69 years, male 16.3
GTEX-UTHO-3026-SM-3GAFB 60-69 years, male 16.1
GTEX-13PVQ-3026-SM-5SI93 50-59 years, male 15.7
GTEX-14BMV-3026-SM-5S2PQ 50-59 years, male 15.3
GTEX-13OW8-2826-SM-5L3GC 60-69 years, male 15.2
GTEX-12ZZY-3026-SM-5GCOU 60-69 years, male 15.1
GTEX-13O3O-3126-SM-5KM3H 60-69 years, female 15.1
GTEX-13OVH-3026-SM-5MR4N 70-79 years, male 15.1
GTEX-ZVT3-3026-SM-5E43N 60-69 years, female 15.1
GTEX-N7MT-1126-SM-5SI7V 60-69 years, female 14.9
GTEX-1117F-3226-SM-5N9CT 60-69 years, female 14.8
GTEX-13G51-3026-SM-5IJB8 60-69 years, male 14.8
GTEX-XLM4-3026-SM-4AT6L 60-69 years, male 14.8
GTEX-12ZZZ-3026-SM-5BC67 60-69 years, male 14.7
GTEX-13X6K-2926-SM-5Q5D5 60-69 years, female 14.6
GTEX-QVUS-2826-SM-3GADB 60-69 years, female 14.5
GTEX-YFC4-3126-SM-5PNV6 40-49 years, female 14.5
GTEX-11DXY-3226-SM-5GIDE 60-69 years, male 14.3
GTEX-T5JC-2426-SM-3NMDB 20-29 years, male 14.2
GTEX-1128S-2726-SM-5H12C 60-69 years, female 14.1
GTEX-12WSH-3026-SM-5CVNI 50-59 years, male 14.1
GTEX-145MG-3026-SM-5RQJA 50-59 years, male 14.1
GTEX-14A5I-2926-SM-5Q5CQ 50-59 years, female 14.1
GTEX-13JUV-2926-SM-5LZX7 40-49 years, female 13.9
GTEX-11EI6-3026-SM-5GZZO 60-69 years, male 13.8
GTEX-11GSO-2926-SM-5HL73 60-69 years, male 13.7
GTEX-13FHP-3026-SM-5IJBS 50-59 years, male 13.7
GTEX-13OW6-3026-SM-5J2MI 50-59 years, male 13.7
GTEX-ZAK1-3026-SM-5S2MJ 50-59 years, female 13.7
GTEX-13IVO-2926-SM-5L3CZ 70-79 years, male 13.6
GTEX-14ASI-3026-SM-5S2PN 60-69 years, male 13.6
GTEX-QDT8-2926-SM-32PKC 30-39 years, female 13.6
GTEX-RNOR-2326-SM-2TF4I 50-59 years, female 13.5
GTEX-13NYB-3026-SM-5IJD7 40-49 years, male 13.4
GTEX-111FC-3126-SM-5GZZ2 60-69 years, male 13.3
GTEX-11NUK-2926-SM-5A5MD 50-59 years, male 13.3
GTEX-145LS-3126-SM-5Q5BY 60-69 years, female 13.3
GTEX-ZE7O-3126-SM-5HL5X 50-59 years, female 13.3
GTEX-11DXW-1126-SM-5H12Q 40-49 years, male 13.2
GTEX-13QIC-2926-SM-5J2NF 60-69 years, female 13.2
GTEX-13S7M-3126-SM-5RQJQ 60-69 years, female 13.2
GTEX-12ZZW-2926-SM-5LZUP 50-59 years, male 13.1
GTEX-1399T-3026-SM-5KLZC 60-69 years, male 13.1
GTEX-13JVG-3126-SM-5L3FH 60-69 years, male 13.1
GTEX-QVJO-1426-SM-2S1QY 60-69 years, female 13.1
GTEX-12ZZX-2926-SM-5GCOQ 40-49 years, female 13.0
GTEX-PWO3-0926-SM-2I5EY 60-69 years, female 13.0
GTEX-ZUA1-3026-SM-59HJC 40-49 years, male 12.9
GTEX-13VXU-2926-SM-5LU5C 50-59 years, male 12.8
GTEX-Q2AG-2926-SM-2HMJ3 40-49 years, female 12.8
GTEX-WL46-2926-SM-3LK82 50-59 years, male 12.7
GTEX-11ONC-2926-SM-5P9JM 60-69 years, male 12.6
GTEX-1313W-3126-SM-5LZUI 50-59 years, female 12.6
GTEX-144GL-3026-SM-5Q5CW 50-59 years, male 12.6
GTEX-145MH-3026-SM-5Q5DZ 50-59 years, male 12.6
GTEX-PVOW-2526-SM-2XCF7 40-49 years, male 12.6
GTEX-11GS4-3126-SM-5A5LH 60-69 years, male 12.5
GTEX-WVLH-3026-SM-3MJG9 50-59 years, male 12.5
GTEX-145MF-2726-SM-5O995 50-59 years, male 12.3
GTEX-RU72-3026-SM-5SI7Y 50-59 years, female 12.2
GTEX-WZTO-2926-SM-3NM9I 40-49 years, male 12.2
GTEX-131YS-3126-SM-5KLYT 60-69 years, female 12.1
GTEX-13FLW-1426-SM-5K7YE 50-59 years, male 12.0
GTEX-13SLX-3126-SM-5S2Q5 50-59 years, female 12.0
GTEX-117XS-3026-SM-5N9CA 60-69 years, male 11.9
GTEX-12WSC-3026-SM-5GCNF 50-59 years, male 11.9
GTEX-QMR6-1426-SM-32PLA 50-59 years, male 11.9
GTEX-13OW7-3026-SM-5L3GY 50-59 years, male 11.8
GTEX-11GSP-3226-SM-5986O 60-69 years, female 11.7
GTEX-11ZUS-2926-SM-5FQSL 30-39 years, male 11.7
GTEX-13O3Q-2926-SM-5KM45 50-59 years, male 11.7
GTEX-13PL6-3126-SM-5LUAR 40-49 years, female 11.7
GTEX-11EMC-3226-SM-5EGKW 60-69 years, female 11.6
GTEX-XOTO-3026-SM-4B65M 50-59 years, male 11.6
GTEX-139T8-1026-SM-5J2MC 60-69 years, male 11.5
GTEX-12WSD-3126-SM-5HL7P 60-69 years, female 11.4
GTEX-131XW-3126-SM-5LZUC 50-59 years, female 11.4
GTEX-T6MN-2626-SM-32PMQ 50-59 years, male 11.4
GTEX-11PRG-2926-SM-5987A 50-59 years, male 11.2
GTEX-Y8DK-0826-SM-4TT3T 60-69 years, male 11.2
GTEX-12126-1026-SM-5P9JJ 20-29 years, male 11.1
GTEX-YJ89-3026-SM-5IFJI 60-69 years, male 11.1
GTEX-13X6J-3026-SM-5Q5CU 50-59 years, male 11.0
GTEX-Z93S-2926-SM-57WB9 50-59 years, male 11.0
GTEX-12WSA-2926-SM-5EQ4D 60-69 years, male 10.9
GTEX-147GR-3026-SM-5S2ML 60-69 years, male 10.9
GTEX-TSE9-3026-SM-3DB76 60-69 years, female 10.9
GTEX-Y111-2726-SM-4TT3N 50-59 years, male 10.2
GTEX-T2IS-3026-SM-32QPM 20-29 years, female 10.0
GTEX-11NV4-2126-SM-5N9DS 60-69 years, male 7.1
Show all
Brain - Frontal Cortex (BA9)
RPKM: 15.0
Samples: 108

Max RPKM: 35.5
Min RPKM: 8.0
Std RPKM: 4.3
Median RPKM: 14.4
GTEX-1445S-0011-R10a-SM-5PNWB 60-69 years, male 35.5
GTEX-13NYS-0011-R10a-SM-5MR4S 60-69 years, male 30.5
GTEX-147F4-0011-R10b-SM-5S2WC 50-59 years, male 28.2
GTEX-X4EP-0011-R10B-SM-4QASJ 60-69 years, female 26.6
GTEX-NPJ7-0011-R10A-SM-2I3E5 60-69 years, female 24.6
GTEX-NL4W-0011-R10A-SM-2I3DY 50-59 years, male 24.2
GTEX-WWYW-0011-R10A-SM-3NB35 50-59 years, female 23.2
GTEX-13N2G-0011-R10a-SM-5MR34 60-69 years, male 23.1
GTEX-13OVJ-0011-R10b-SM-5L3HT 50-59 years, female 23.1
GTEX-13QJC-0011-R10a-SM-5SI63 60-69 years, female 20.2
GTEX-13X6K-0011-R10a-SM-5P9JR 60-69 years, female 18.6
GTEX-X4XX-0011-R10B-SM-46MWO 60-69 years, male 18.6
GTEX-12WSF-0011-R10a-SM-5LZVH 70-79 years, male 18.5
GTEX-132Q8-0011-R10b-SM-5DUWZ 60-69 years, male 18.5
GTEX-11WQK-0011-R10a-SM-5BC6R 50-59 years, male 18.3
GTEX-NPJ8-0011-R10A-SM-2YUMO 40-49 years, male 18.0
GTEX-13OW8-0011-R10a-SM-5L3H6 60-69 years, male 17.9
GTEX-13N1W-0011-R10b-SM-5MR4H 70-79 years, male 17.8
GTEX-XMD1-0011-R10A-SM-4AT4A 60-69 years, male 17.7
GTEX-13CZV-0011-R10b-SM-5LZYD 60-69 years, male 17.2
GTEX-14ASI-0011-R10b-SM-5S2VZ 60-69 years, male 16.9
GTEX-13O3O-0011-R10a-SM-5LUA9 60-69 years, female 16.8
GTEX-ZF28-0011-R10a-SM-4WWEH 60-69 years, male 16.8
GTEX-X585-0011-R10A-SM-46MUY 50-59 years, male 16.6
GTEX-14BIL-0011-R10a-SM-5SI75 50-59 years, male 16.2
GTEX-13FHO-0011-R10b-SM-5J2MM 60-69 years, male 15.9
GTEX-13SLW-0011-R10a-SM-5S2UI 70-79 years, male 15.9
GTEX-P44H-0011-R10A-SM-2XCEK 40-49 years, male 15.9
GTEX-QVUS-0011-R10A-SM-3GIK3 60-69 years, female 15.9
GTEX-13RTJ-0011-R10b-SM-5O9CW 60-69 years, male 15.8
GTEX-N7MT-0011-R10A-SM-2I3E1 60-69 years, female 15.7
GTEX-NL3H-0011-R10A-SM-2I3E9 60-69 years, male 15.7
GTEX-13SLX-0011-R10a-SM-5P9HV 50-59 years, female 15.6
GTEX-Q2AG-0011-R10A-SM-2HMLA 40-49 years, female 15.6
GTEX-QVJO-0011-R10A-SM-2S1QJ 60-69 years, female 15.5
GTEX-XLM4-0011-R10A-SM-4AT5P 60-69 years, male 15.5
GTEX-YFC4-0011-R10a-SM-4SOK5 40-49 years, female 15.5
GTEX-RVPU-0011-R10A-SM-2XCAH 50-59 years, male 15.4
GTEX-WVLH-0011-R10A-SM-3MJFM 50-59 years, male 15.3
GTEX-13OW6-0011-R10a-SM-5L3HE 50-59 years, male 15.2
GTEX-13O3Q-0011-R10b-SM-5KM39 50-59 years, male 15.1
GTEX-12WSE-0011-R10b-SM-5P9JV 20-29 years, male 15.0
GTEX-131XH-0011-R10a-SM-5EGLJ 50-59 years, male 15.0
GTEX-OXRN-0011-R10A-SM-2I5GC 50-59 years, male 15.0
GTEX-11H98-0011-R10b-SM-5NQ98 50-59 years, male 14.9
GTEX-12WSH-0011-R10a-SM-5LZUS 50-59 years, male 14.8
GTEX-QMR6-0011-R10A-SM-32PKO 50-59 years, male 14.8
GTEX-13QIC-0011-R10a-SM-5O9C7 60-69 years, female 14.7
GTEX-145MH-0011-R10b-SM-5PNUK 50-59 years, male 14.7
GTEX-13JUV-0011-R10b-SM-5LZXR 40-49 years, female 14.6
GTEX-13S7M-0011-R10b-SM-5PNZB 60-69 years, female 14.6
GTEX-13X6I-0011-R10a-SM-5PNWI 60-69 years, male 14.6
GTEX-T5JC-0011-R10A-SM-32PM2 20-29 years, male 14.6
GTEX-145MG-0011-R10a-SM-5PNWG 50-59 years, male 14.4
GTEX-14BIN-0011-R10a-SM-5S2UA 50-59 years, female 14.4
GTEX-12ZZX-0011-R10b-SM-5DUWK 40-49 years, female 14.3
GTEX-12ZZY-0011-R10b-SM-5HL7W 60-69 years, male 14.3
GTEX-147GR-0011-R10b-SM-5S2UM 60-69 years, male 14.3
GTEX-13OVL-0011-R10a-SM-5L3GS 50-59 years, male 14.1
GTEX-13OW7-0011-R10a-SM-5L3H3 50-59 years, male 14.0
GTEX-12WSC-0011-R10a-SM-5GU57 50-59 years, male 13.9
GTEX-QDT8-0011-R10A-SM-32PKG 30-39 years, female 13.9
GTEX-ZAB4-0011-R10a-SM-4SOKH 40-49 years, male 13.9
GTEX-S7SE-0011-R10A-SM-2XCDF 50-59 years, male 13.6
GTEX-T6MN-0011-R10A-SM-32QP7 50-59 years, male 13.6
GTEX-145LS-0011-R10a-SM-5PNUQ 60-69 years, female 13.5
GTEX-131YS-0011-R10b-SM-5EQ5N 60-69 years, female 13.4
GTEX-13FLV-0011-R10b-SM-5LZZ2 50-59 years, male 13.4
GTEX-13FLW-0011-R10b-SM-5LZZF 50-59 years, male 13.4
GTEX-1313W-0011-R10b-SM-5DUXA 50-59 years, female 13.3
GTEX-WL46-0011-R10A-SM-3MJFQ 50-59 years, male 13.3
GTEX-X261-0011-R10B-SM-4E3JT 50-59 years, male 13.3
GTEX-ZVZQ-0011-R10b-SM-51MRT 60-69 years, female 13.2
GTEX-Y8DK-0011-R10A-SM-4SOK1 60-69 years, male 13.1
GTEX-ZUA1-0011-R10a-SM-51MT6 40-49 years, male 13.1
GTEX-13X6J-0011-R10b-SM-5PNWA 50-59 years, male 13.0
GTEX-12WSM-0011-R10a-SM-5DUWV 60-69 years, male 12.9
GTEX-12WSA-0011-R10b-SM-5P9ET 60-69 years, male 12.8
GTEX-13FXS-0011-R10a-SM-5J2MA 50-59 years, male 12.8
GTEX-N7MS-0011-R10A-SM-2HMJK 60-69 years, male 12.8
GTEX-YJ89-0011-R10a-SM-4SOK9 60-69 years, male 12.8
GTEX-145LU-0011-R10a-SM-5PNWJ 50-59 years, male 12.7
GTEX-WZTO-0011-R10B-SM-4E3KB 40-49 years, male 12.7
GTEX-12126-0011-R10b-SM-5BC6T 20-29 years, male 12.6
GTEX-Z93S-0011-R10a-SM-4RGNM 50-59 years, male 12.5
GTEX-12ZZZ-0011-R10a-SM-5P9HC 60-69 years, male 12.4
GTEX-11GSP-0011-R10a-SM-5NQ7J 60-69 years, female 12.3
GTEX-ZDXO-0011-R10a-SM-4WWD8 60-69 years, male 12.3
GTEX-11WQC-0011-R10a-SM-57WCT 60-69 years, male 12.1
GTEX-13FTZ-0011-R10b-SM-5KLZS 60-69 years, male 12.0
GTEX-ZVT3-0011-R10b-SM-57WB6 60-69 years, female 12.0
GTEX-13NYB-0011-R10a-SM-5KM43 40-49 years, male 11.8
GTEX-13JVG-0011-R10b-SM-5KM2P 60-69 years, male 11.1
GTEX-OXRO-0011-R10A-SM-2I5EH 60-69 years, female 10.9
GTEX-12WSD-0011-R10b-SM-5GU79 60-69 years, female 10.6
GTEX-12ZZW-0011-R10b-SM-5HL9X 50-59 years, male 10.6
GTEX-13G51-0011-R10b-SM-5LZYF 60-69 years, male 10.6
GTEX-131XW-0011-R10a-SM-5DUVA 50-59 years, female 10.2
GTEX-TSE9-0011-R10A-SM-3DB7O 60-69 years, female 10.0
GTEX-ZE7O-0011-R10a-SM-57WAZ 50-59 years, female 10.0
GTEX-13NZA-0011-R10b-SM-5KM54 60-69 years, male 9.9
GTEX-11ZUS-0011-R10b-SM-5BC79 30-39 years, male 9.8
GTEX-1477Z-0011-R10b-SM-5S2RF 60-69 years, male 9.7
GTEX-ZV68-0011-R10a-SM-51MT7 50-59 years, female 9.5
GTEX-139TS-0011-R10a-SM-5K7TU 60-69 years, male 9.3
GTEX-14753-0011-R10b-SM-5S2WE 60-69 years, male 9.3
GTEX-13IVO-0011-R10a-SM-5LZY3 70-79 years, male 9.2
GTEX-ZXG5-0011-R10a-SM-57WDD 60-69 years, male 8.0
Show all

CEREBRAL CORTEX - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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