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TISSUE ATLAS PRIMARY DATA STOMACH

GENE/PROTEIN

Antibody validation


Dictionary

Stomach, lower
Stomach, upper

Tissue proteome

Stomach

STOMACH - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:43.9TPM
GTEx:17.7RPKM

STOMACH 1 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA041014

 

Antibody HPA043228

 

Glandular cells

Medium   High  
   
   
   

STOMACH 2 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Not available
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA041014

 

Glandular cells

High  
 
 
 

STOMACH - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

43.9

overview Female, age 33 Sample 1
TPM: 42.5
Cell types%
Glandular cells: 60
Smooth muscle cells: 5
Other cell types: 35
N/A Male, age 82 Sample 2
TPM: 42
Cell types%
Glandular cells: 65
Smooth muscle cells: 5
Other cell types: 30
overview Male, age 71 Sample 3
TPM: 34.1
Cell types%
Glandular cells: 50
Smooth muscle cells: 5
Other cell types: 45
overview Female, age 66 Sample 4
TPM: 56.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 10
Other cell types: 40

STOMACH - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

17.7

GTEx sample id

Sample description

RPKM

Stomach
RPKM: 17.7
Samples: 193

Max RPKM: 39.0
Min RPKM: 2.8
Std RPKM: 8.3
Median RPKM: 18.2
GTEX-RWS6-0926-SM-47JXE 60-69 years, female 39.0
GTEX-S95S-0826-SM-4B64N 60-69 years, male 36.4
GTEX-XUZC-0726-SM-4BOPH 30-39 years, female 34.0
GTEX-XQ8I-2026-SM-4BOOL 50-59 years, male 33.9
GTEX-WFON-1126-SM-4LVMA 40-49 years, male 33.6
GTEX-Q2AI-0826-SM-48TZO 40-49 years, male 33.4
GTEX-1399S-1626-SM-5P9GI 30-39 years, female 32.9
GTEX-Y8LW-0826-SM-4WWDO 50-59 years, female 32.2
GTEX-UJMC-1226-SM-4IHLI 50-59 years, male 31.9
GTEX-T6MO-0726-SM-4DM58 40-49 years, female 31.5
GTEX-OOBJ-1526-SM-3NB1Q 60-69 years, male 31.3
GTEX-S4UY-1626-SM-4AD55 40-49 years, female 31.2
GTEX-13O21-0926-SM-5IFGT 50-59 years, male 31.0
GTEX-ZYFG-1326-SM-5GICJ 60-69 years, female 31.0
GTEX-144GN-1226-SM-5O991 50-59 years, male 29.9
GTEX-S341-0626-SM-4AD5T 40-49 years, female 29.6
GTEX-XBED-1226-SM-4AT5V 60-69 years, male 29.3
GTEX-ZT9W-1526-SM-4YCDE 50-59 years, male 29.0
GTEX-V955-1326-SM-4JBHR 60-69 years, male 28.9
GTEX-U3ZN-2026-SM-4DXUC 30-39 years, female 28.4
GTEX-ZP4G-1226-SM-4WWCJ 20-29 years, female 27.9
GTEX-QV44-1226-SM-4R1KE 50-59 years, male 27.7
GTEX-13FTX-0726-SM-5N9BI 20-29 years, female 27.6
GTEX-ZLV1-0826-SM-4WWEQ 60-69 years, female 27.6
GTEX-ZV7C-1626-SM-5NQ7E 50-59 years, male 27.5
GTEX-SUCS-0926-SM-4DM4Z 70-79 years, male 27.2
GTEX-ZF2S-1426-SM-57WET 50-59 years, female 27.1
GTEX-T5JW-0926-SM-4DM5K 20-29 years, female 27.0
GTEX-NFK9-1526-SM-3LK7B 40-49 years, male 26.9
GTEX-VJYA-1026-SM-4KL21 60-69 years, male 26.9
GTEX-1399R-1126-SM-5IFIO 30-39 years, male 26.7
GTEX-X15G-1126-SM-4PQZG 50-59 years, female 26.6
GTEX-11I78-1726-SM-5A5M3 50-59 years, female 26.5
GTEX-PW2O-1226-SM-48TCH 20-29 years, male 26.5
GTEX-13FH7-1026-SM-5IJGF 50-59 years, female 26.2
GTEX-145MN-1326-SM-5NQ9S 30-39 years, male 26.0
GTEX-QV31-0626-SM-447C5 30-39 years, male 26.0
GTEX-OHPK-1526-SM-3MJGM 50-59 years, female 25.7
GTEX-145LT-1426-SM-5O9B3 40-49 years, male 25.4
GTEX-TMMY-1626-SM-4DXTY 40-49 years, female 25.1
GTEX-132QS-1826-SM-5IFFN 60-69 years, male 24.7
GTEX-11NSD-1426-SM-5HL67 20-29 years, male 24.6
GTEX-13113-0726-SM-5LZUF 60-69 years, female 24.4
GTEX-S3XE-1026-SM-4AD4O 50-59 years, male 24.4
GTEX-YFCO-0826-SM-5LUAG 40-49 years, male 24.2
GTEX-Q734-1026-SM-48U16 40-49 years, female 24.1
GTEX-117YX-1026-SM-5H11V 50-59 years, male 23.9
GTEX-QLQW-0726-SM-447AA 30-39 years, male 23.8
GTEX-V1D1-1726-SM-4JBHB 50-59 years, male 23.8
GTEX-QLQ7-0826-SM-447B3 60-69 years, male 23.7
GTEX-P4PP-1526-SM-3P61M 30-39 years, female 23.5
GTEX-13D11-2126-SM-5IFH2 50-59 years, female 23.4
GTEX-111CU-0926-SM-5EGIK 50-59 years, male 23.1
GTEX-WHWD-1426-SM-4OORU 50-59 years, male 23.1
GTEX-P78B-1826-SM-3P5YX 40-49 years, female 23.0
GTEX-ZVP2-1626-SM-5GU5D 50-59 years, male 23.0
GTEX-QCQG-0526-SM-48U2A 50-59 years, female 22.9
GTEX-ZXES-1426-SM-5NQ8S 30-39 years, female 22.6
GTEX-1122O-1926-SM-5EGIQ 60-69 years, female 22.4
GTEX-131XF-1226-SM-5HL8V 60-69 years, male 22.4
GTEX-YEC4-1426-SM-5IFHS 40-49 years, male 22.4
GTEX-PX3G-1526-SM-48U11 20-29 years, female 22.3
GTEX-11DXX-1326-SM-5GIDZ 60-69 years, female 22.2
GTEX-Y5V6-1326-SM-4VDTF 60-69 years, male 22.2
GTEX-ZLFU-1326-SM-4WWET 40-49 years, male 22.2
GTEX-ZZ64-0426-SM-5E43F 20-29 years, male 22.2
GTEX-145ME-1026-SM-5O9B4 40-49 years, female 21.7
GTEX-11EM3-1026-SM-5A5KL 20-29 years, female 21.6
GTEX-PWCY-0926-SM-48TD7 20-29 years, female 21.5
GTEX-RM2N-0826-SM-48FD3 50-59 years, male 21.5
GTEX-W5WG-1726-SM-4LMI5 50-59 years, female 21.4
GTEX-ZY6K-0726-SM-5A5L8 50-59 years, male 21.4
GTEX-WFG8-1326-SM-4LVN3 20-29 years, male 21.1
GTEX-ZDYS-1926-SM-5HL59 50-59 years, male 21.1
GTEX-ZVT2-1626-SM-51MRC 50-59 years, female 21.0
GTEX-XBEW-1826-SM-4RTWX 40-49 years, male 20.8
GTEX-111YS-1126-SM-5GZYQ 60-69 years, male 20.5
GTEX-133LE-1326-SM-5IFGO 20-29 years, female 20.5
GTEX-13FTW-1726-SM-5KM2B 40-49 years, male 20.2
GTEX-ZZPU-1426-SM-5GZZ6 50-59 years, female 20.1
GTEX-PWOO-1226-SM-48TCO 40-49 years, female 20.0
GTEX-XXEK-0826-SM-4BRWG 50-59 years, male 20.0
GTEX-12696-1726-SM-5EQLH 60-69 years, male 19.9
GTEX-WRHK-0626-SM-4MVOE 20-29 years, female 19.8
GTEX-13U4I-2526-SM-5SI8Z 40-49 years, female 19.7
GTEX-Y9LG-1026-SM-5IFJN 30-39 years, male 19.7
GTEX-SNMC-0626-SM-4DM6H 20-29 years, male 19.6
GTEX-1339X-1426-SM-5K7YO 40-49 years, male 19.5
GTEX-ZQUD-0826-SM-57WDQ 30-39 years, male 19.4
GTEX-139D8-2326-SM-5IFGE 30-39 years, female 19.2
GTEX-ZVZP-1726-SM-5GZWY 50-59 years, male 18.9
GTEX-11TT1-0726-SM-5GU5A 20-29 years, male 18.8
GTEX-XUJ4-1226-SM-4BOPD 60-69 years, female 18.8
GTEX-Y3IK-1426-SM-4YCES 50-59 years, female 18.6
GTEX-POMQ-0826-SM-3P61H 20-29 years, female 18.3
GTEX-12WSK-1426-SM-5CVNN 40-49 years, female 18.2
GTEX-XV7Q-1326-SM-4BRWM 40-49 years, female 18.2
GTEX-12WSJ-0926-SM-5P9JD 40-49 years, female 18.0
GTEX-ZA64-0826-SM-5HL9U 20-29 years, male 17.7
GTEX-S4Q7-0726-SM-4AD5F 20-29 years, male 17.6
GTEX-WFG7-1326-SM-4LMK1 20-29 years, male 17.6
GTEX-QDVN-1226-SM-48TZ5 50-59 years, male 17.4
GTEX-12WSD-2326-SM-59HKQ 60-69 years, female 17.3
GTEX-ZAB4-1526-SM-5CVN7 40-49 years, male 17.2
GTEX-OXRK-1626-SM-3NB17 50-59 years, female 17.0
GTEX-13QBU-1126-SM-5LU44 40-49 years, female 16.9
GTEX-12WSG-2026-SM-5FQUU 50-59 years, female 16.7
GTEX-14BMU-1126-SM-5RQJ8 20-29 years, female 16.7
GTEX-ZPU1-1626-SM-4WWB2 40-49 years, male 16.7
GTEX-13X6H-1626-SM-5Q5CT 50-59 years, female 16.6
GTEX-QDVJ-1426-SM-48U1Y 50-59 years, male 16.6
GTEX-O5YW-1526-SM-3MJGL 50-59 years, male 16.4
GTEX-13CF3-1926-SM-5K7WF 60-69 years, female 16.2
GTEX-Q2AH-1126-SM-48TZM 40-49 years, male 16.2
GTEX-QXCU-1926-SM-48FE4 50-59 years, male 15.7
GTEX-SNOS-0826-SM-4DM5N 40-49 years, male 15.3
GTEX-144GM-1726-SM-5O9AS 20-29 years, male 15.1
GTEX-R53T-1226-SM-48FCT 50-59 years, female 15.1
GTEX-WEY5-1226-SM-4LMIQ 40-49 years, female 15.0
GTEX-QMRM-1126-SM-447BN 50-59 years, male 14.9
GTEX-ZYY3-1726-SM-5EGH3 60-69 years, female 14.9
GTEX-T8EM-1226-SM-4DM5J 40-49 years, male 14.8
GTEX-RTLS-2626-SM-46MUJ 60-69 years, female 14.6
GTEX-145MO-2226-SM-5Q5BN 60-69 years, male 14.3
GTEX-U4B1-1026-SM-4DXT1 40-49 years, male 14.3
GTEX-PWN1-1526-SM-48TDA 40-49 years, female 14.1
GTEX-Y3I4-1626-SM-4TT7W 50-59 years, male 14.0
GTEX-Y8E4-1526-SM-4WWDI 40-49 years, male 13.9
GTEX-11GSP-2126-SM-5HL5E 60-69 years, female 13.6
GTEX-UPIC-1826-SM-4IHKC 20-29 years, female 13.6
GTEX-13RTK-0226-SM-5RQHR 20-29 years, male 13.0
GTEX-14BMV-2226-SM-5RQHX 50-59 years, male 12.9
GTEX-Y5LM-1326-SM-5RQIS 40-49 years, female 12.7
GTEX-139YR-1926-SM-5LZXM 50-59 years, male 12.6
GTEX-13OW6-2526-SM-5IJEC 50-59 years, male 12.6
GTEX-12BJ1-1726-SM-5HL9B 60-69 years, male 12.3
GTEX-132AR-2426-SM-5IFFD 50-59 years, female 11.8
GTEX-SIU7-1426-SM-4BRWT 50-59 years, male 11.7
GTEX-13PVQ-2126-SM-5L3FW 50-59 years, male 11.2
GTEX-131XG-1226-SM-5EGH9 50-59 years, female 11.1
GTEX-WH7G-1526-SM-4LVMX 40-49 years, male 10.9
GTEX-WZTO-2126-SM-4PQYW 40-49 years, male 10.7
GTEX-13S7M-1826-SM-5RQK6 60-69 years, female 10.3
GTEX-R55D-1526-SM-48FEJ 50-59 years, male 10.1
GTEX-13QJ3-2726-SM-5SI6L 50-59 years, male 9.8
GTEX-R55C-1026-SM-48FCM 40-49 years, male 9.8
GTEX-WHPG-0426-SM-4M1XW 50-59 years, male 9.8
GTEX-RU1J-0526-SM-46MUT 20-29 years, female 9.7
GTEX-ZVT3-2126-SM-59HL2 60-69 years, female 9.7
GTEX-146FR-2026-SM-5NQAI 60-69 years, female 9.3
GTEX-131XE-2226-SM-5PNYX 50-59 years, male 9.0
GTEX-PLZ6-0826-SM-3P61K 30-39 years, male 8.8
GTEX-T5JC-1926-SM-4DM6Q 20-29 years, male 8.6
GTEX-XAJ8-0326-SM-47JYI 40-49 years, male 8.6
GTEX-OIZH-1526-SM-3NB1J 50-59 years, male 8.5
GTEX-U8T8-1226-SM-4E3IH 60-69 years, male 8.5
GTEX-11EI6-2426-SM-5PNVS 60-69 years, male 8.3
GTEX-13O61-1126-SM-5L3FI 60-69 years, male 8.2
GTEX-13OVI-2426-SM-5KM4J 60-69 years, female 8.1
GTEX-13O3Q-2126-SM-5KM4C 50-59 years, male 7.9
GTEX-YJ8A-1526-SM-5P9FT 20-29 years, male 7.9
GTEX-1211K-1426-SM-5FQTF 60-69 years, female 7.8
GTEX-S7SF-0626-SM-4AD4V 20-29 years, female 7.8
GTEX-S4P3-0726-SM-4AD57 50-59 years, female 7.6
GTEX-117YW-2226-SM-5N9DB 50-59 years, male 7.5
GTEX-P4PQ-1526-SM-3NMCK 60-69 years, male 7.2
GTEX-XPVG-1526-SM-4B66C 50-59 years, male 7.1
GTEX-UPK5-2126-SM-4JBJK 40-49 years, male 7.0
GTEX-ZE7O-3026-SM-51MS4 50-59 years, female 7.0
GTEX-11EQ9-1226-SM-5987E 30-39 years, male 6.8
GTEX-11NUK-2426-SM-5BC4U 50-59 years, male 6.8
GTEX-11VI4-0326-SM-5EQ6L 40-49 years, female 6.8
GTEX-P4QT-1526-SM-3NMCT 50-59 years, female 6.8
GTEX-R55G-1126-SM-48FDG 40-49 years, female 6.7
GTEX-1399U-1626-SM-5P9J3 50-59 years, female 6.6
GTEX-TKQ2-0926-SM-4DXU5 50-59 years, male 6.4
GTEX-YEC3-1426-101806-SM-5PNXX 50-59 years, male 6.3
GTEX-UJHI-1026-SM-4IHJP 50-59 years, female 6.2
GTEX-WFJO-1126-SM-4LVLZ 30-39 years, male 5.9
GTEX-TKQ1-0526-SM-4DXTG 30-39 years, male 5.7
GTEX-12C56-0526-SM-5FQST 20-29 years, male 5.6
GTEX-146FH-2126-SM-5SI9U 50-59 years, female 5.5
GTEX-S4Z8-1226-SM-4AD6W 60-69 years, male 5.4
GTEX-ZTX8-0426-SM-59HLG 20-29 years, male 5.4
GTEX-11P7K-1726-SM-5GU6F 30-39 years, male 5.2
GTEX-ZPIC-2026-SM-57WG3 40-49 years, female 4.9
GTEX-ZV6S-0926-SM-57WGB 40-49 years, female 4.7
GTEX-ZYVF-2726-SM-5GID4 50-59 years, female 4.6
GTEX-13N1W-2026-SM-5K7YU 70-79 years, male 4.4
GTEX-11WQK-2626-SM-5EQ4K 50-59 years, male 4.0
GTEX-13111-1226-SM-5GCNC 50-59 years, male 3.8
GTEX-11P82-0726-SM-5PNYL 20-29 years, male 3.7
GTEX-Y114-1226-SM-4TT88 50-59 years, female 2.8
Show all

STOMACH - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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