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TISSUE ATLAS PRIMARY DATA TESTIS

GENE/PROTEIN

Antibody validation


Dictionary

Testis

Tissue proteome

Testis

TESTIS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:154.3TPM
GTEx:53.8RPKM
FANTOM5:90.0Tags Per Million

TESTIS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in seminiferous ducts:High
Leydig cells:High
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA029018

 

Antibody CAB026381

 

Cells in seminiferous ducts

Low   High  

Leydig cells

High   High  
   
   
   

TESTIS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

154.3

overview Male, age 56 Sample 1
TPM: 134
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34 Sample 2
TPM: 140.5
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25
overview Male, age 62 Sample 3
TPM: 168.4
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 34 Sample 4
TPM: 136.6
Cell types%
Cells in seminiferous ducts: 60
Other cell types: 40
overview Male, age 26 Sample 5
TPM: 168.4
Cell types%
Cells in seminiferous ducts: 55
Other cell types: 45
overview Male, age 50 Sample 6
TPM: 176.3
Cell types%
Cells in seminiferous ducts: 85
Other cell types: 15
overview Male, age 37 Sample 7
TPM: 148.5
Cell types%
Cells in seminiferous ducts: 35
Other cell types: 65
overview Male, age 51 Sample 8
TPM: 173.3
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34 Sample 9
TPM: 143.9
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 26 Sample 10
TPM: 152.8
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25

TESTIS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

53.8

GTEx sample id

Sample description

RPKM

Testis
RPKM: 53.8
Samples: 172

Max RPKM: 71.4
Min RPKM: 34.8
Std RPKM: 6.8
Median RPKM: 54.4
GTEX-11EQ9-1926-SM-5PNVV 30-39 years, male 71.4
GTEX-XGQ4-2026-SM-4AT6G 50-59 years, male 68.7
GTEX-111CU-1726-SM-5EGHM 50-59 years, male 66.9
GTEX-11WQC-2326-SM-5EQKE 60-69 years, male 66.8
GTEX-Q2AI-1226-SM-48U14 40-49 years, male 66.4
GTEX-111YS-2026-SM-5EGGL 60-69 years, male 65.4
GTEX-REY6-0126-SM-48FDT 60-69 years, male 64.6
GTEX-RM2N-1326-SM-48FCW 50-59 years, male 64.5
GTEX-ZDYS-1326-SM-5IJFF 50-59 years, male 64.4
GTEX-11EQ8-1426-SM-5EGJR 60-69 years, male 64.1
GTEX-139TS-1726-SM-5IJG5 60-69 years, male 64.0
GTEX-S4Q7-1226-SM-4AD5I 20-29 years, male 63.8
GTEX-XBED-2026-SM-4AT5D 60-69 years, male 63.7
GTEX-111VG-1926-SM-5GIDO 60-69 years, male 63.3
GTEX-WH7G-1926-SM-4LVMM 40-49 years, male 62.9
GTEX-132QS-1226-SM-5P9GD 60-69 years, male 62.7
GTEX-11NSD-1026-SM-5N9BE 20-29 years, male 62.6
GTEX-TKQ1-0926-SM-4DXU2 30-39 years, male 62.2
GTEX-OXRL-2126-SM-3NM98 50-59 years, male 61.8
GTEX-XBEC-0126-SM-4GIDT 50-59 years, male 61.8
GTEX-13OVL-0426-SM-5IFG6 50-59 years, male 61.3
GTEX-YEC3-1726-SM-5IFIK 50-59 years, male 61.1
GTEX-11ZUS-2726-SM-5FQUA 30-39 years, male 61.0
GTEX-Y111-2426-SM-4TT23 50-59 years, male 60.8
GTEX-144GM-0426-SM-5Q5C8 20-29 years, male 60.6
GTEX-14ABY-0626-SM-5Q5C9 50-59 years, male 60.5
GTEX-OHPM-2126-SM-3LK75 50-59 years, male 60.5
GTEX-13VXU-0726-SM-5J2O7 50-59 years, male 60.3
GTEX-ZV7C-2026-SM-5NQ8F 50-59 years, male 60.2
GTEX-11DXZ-2126-SM-59881 50-59 years, male 60.1
GTEX-145MO-0126-SM-5S2QU 60-69 years, male 60.1
GTEX-PW2O-1426-SM-48TCD 20-29 years, male 60.1
GTEX-WK11-0326-SM-4OOS6 50-59 years, male 60.0
GTEX-ZPU1-2126-SM-57WED 40-49 years, male 59.7
GTEX-S3XE-1526-SM-4AD5A 50-59 years, male 59.6
GTEX-N7MS-0126-SM-3TW8O 60-69 years, male 59.2
GTEX-ZTSS-1526-SM-51MTC 40-49 years, male 59.2
GTEX-13FHP-2826-SM-5IJFW 50-59 years, male 59.0
GTEX-X5EB-2026-SM-4E3KA 40-49 years, male 58.9
GTEX-ZT9W-2226-SM-57WFU 50-59 years, male 58.6
GTEX-OOBK-2126-SM-3LK5T 40-49 years, male 58.5
GTEX-11OF3-1826-SM-5987N 60-69 years, male 58.4
GTEX-YB5E-1926-SM-5IFIG 40-49 years, male 58.4
GTEX-12WSH-0326-SM-5GCNH 50-59 years, male 58.3
GTEX-1399R-1626-SM-5P9GG 30-39 years, male 58.0
GTEX-YFCO-1726-SM-4W21S 40-49 years, male 58.0
GTEX-145MH-2326-SM-5O9AW 50-59 years, male 57.9
GTEX-T6MN-2026-SM-4DM7L 50-59 years, male 57.9
GTEX-WHSB-2126-SM-4M1XF 50-59 years, male 57.9
GTEX-ZVZP-2226-SM-57WBF 50-59 years, male 57.9
GTEX-ZZ64-1126-SM-5GZXY 20-29 years, male 57.9
GTEX-11NV4-1726-SM-5N9FC 60-69 years, male 57.7
GTEX-T8EM-0126-SM-4DM5R 40-49 years, male 57.5
GTEX-11EI6-2226-SM-5EGJM 60-69 years, male 57.3
GTEX-117XS-2026-SM-5GID1 60-69 years, male 57.2
GTEX-QEG4-0126-SM-48TZE 30-39 years, male 57.2
GTEX-11GS4-2026-SM-5N9CP 60-69 years, male 56.9
GTEX-13O61-2026-SM-5J2M6 60-69 years, male 56.8
GTEX-145LT-0426-SM-5LUAP 40-49 years, male 56.7
GTEX-ZUA1-2726-SM-59HLJ 40-49 years, male 56.3
GTEX-ZA64-1626-SM-5CVME 20-29 years, male 56.0
GTEX-OIZH-2126-SM-3NB1P 50-59 years, male 55.9
GTEX-QV31-1126-SM-4R1K4 30-39 years, male 55.9
GTEX-S33H-0126-SM-4AD62 30-39 years, male 55.9
GTEX-YEC4-1526-SM-4W1YU 40-49 years, male 55.9
GTEX-ZTX8-1126-SM-51MRM 20-29 years, male 55.9
GTEX-ZVTK-0126-SM-57WDG 20-29 years, male 55.8
GTEX-ZYT6-2726-SM-5GICP 30-39 years, male 55.8
GTEX-11LCK-2326-SM-5HL53 30-39 years, male 55.7
GTEX-V1D1-2126-SM-4JBH4 50-59 years, male 55.6
GTEX-12C56-1426-SM-5FQSW 20-29 years, male 55.5
GTEX-13NZB-2026-SM-5MR4M 30-39 years, male 55.5
GTEX-13OW5-2526-SM-5L3I1 60-69 years, male 55.4
GTEX-144GL-0726-SM-5LU4P 50-59 years, male 55.3
GTEX-Q2AH-1526-SM-48TZG 40-49 years, male 55.1
GTEX-XAJ8-1326-SM-47JYT 40-49 years, male 55.1
GTEX-QV44-1726-SM-4R1KG 50-59 years, male 55.0
GTEX-SNOS-1126-SM-4DM67 40-49 years, male 55.0
GTEX-ZAB5-2426-SM-5CVMW 50-59 years, male 55.0
GTEX-13FTW-1326-SM-5LZZD 40-49 years, male 54.7
GTEX-U3ZH-1526-SM-4DXV1 30-39 years, male 54.7
GTEX-P4QS-2126-SM-3NMCF 60-69 years, male 54.6
GTEX-S7PM-0626-SM-4AD4Q 60-69 years, male 54.5
GTEX-TKQ2-1526-SM-4DXUN 50-59 years, male 54.5
GTEX-WFG8-1926-SM-4LVM1 20-29 years, male 54.5
GTEX-WZTO-0326-SM-4PQYZ 40-49 years, male 54.5
GTEX-S7SE-0326-SM-4AT5Q 50-59 years, male 54.2
GTEX-YF7O-2026-SM-4W1YE 50-59 years, male 54.0
GTEX-139TT-2226-SM-5LZWO 60-69 years, male 53.9
GTEX-UPJH-0126-SM-4IHLL 50-59 years, male 53.8
GTEX-U4B1-1526-SM-4DXSL 40-49 years, male 53.7
GTEX-139T6-1226-SM-5IFFC 50-59 years, male 53.6
GTEX-XMK1-2026-SM-4B65K 40-49 years, male 53.6
GTEX-ZYFC-0126-SM-5GIEH 50-59 years, male 53.6
GTEX-S95S-1126-SM-4B64E 60-69 years, male 53.4
GTEX-WOFM-1126-SM-4OOSB 20-29 years, male 53.4
GTEX-ZQUD-2026-SM-51MSM 30-39 years, male 53.4
GTEX-QMRM-1526-SM-4R1K6 50-59 years, male 53.3
GTEX-13112-0226-SM-5P9IV 50-59 years, male 53.1
GTEX-13N1W-2626-SM-5IJEP 70-79 years, male 53.1
GTEX-12ZZY-0126-SM-5LZV2 60-69 years, male 52.9
GTEX-147JS-0126-SM-5S2TW 60-69 years, male 52.9
GTEX-SNMC-1026-SM-4DM7K 20-29 years, male 52.9
GTEX-QLQW-1026-SM-447A9 30-39 years, male 52.7
GTEX-U3ZM-1626-SM-4DXSK 40-49 years, male 52.7
GTEX-13O21-1226-SM-5J2MK 50-59 years, male 52.6
GTEX-131XE-0426-SM-5IJF4 50-59 years, male 52.4
GTEX-XQ3S-2726-SM-4BOP2 20-29 years, male 52.2
GTEX-OOBJ-2126-SM-3NB1N 60-69 years, male 52.1
GTEX-11NUK-2626-SM-5A5MB 50-59 years, male 52.0
GTEX-Z93S-1726-SM-5HL8G 50-59 years, male 51.9
GTEX-QLQ7-1426-SM-4R1JX 60-69 years, male 51.6
GTEX-R55C-1426-SM-48FED 40-49 years, male 51.5
GTEX-13N2G-0126-SM-5N9DV 60-69 years, male 51.4
GTEX-14753-0626-SM-5Q5CY 60-69 years, male 51.3
GTEX-11O72-0726-SM-5P9GO 40-49 years, male 51.2
GTEX-11TUW-2226-SM-5EQL9 60-69 years, male 51.2
GTEX-12WSL-2326-SM-5DUXQ 50-59 years, male 51.2
GTEX-117YW-1526-SM-5EGGP 50-59 years, male 51.0
GTEX-11P82-1526-SM-5BC5M 20-29 years, male 51.0
GTEX-1212Z-0326-SM-5FQSJ 60-69 years, male 50.9
GTEX-SUCS-1326-SM-4DM5T 70-79 years, male 50.9
GTEX-V955-1926-SM-4KL1L 60-69 years, male 50.9
GTEX-Y8E4-2226-SM-5LU94 40-49 years, male 50.9
GTEX-XPT6-1626-SM-4B655 20-29 years, male 50.6
GTEX-RWSA-2426-SM-47JXR 40-49 years, male 50.5
GTEX-11P7K-1026-SM-5HL6Y 30-39 years, male 50.4
GTEX-Y5V6-1726-SM-4VDSZ 60-69 years, male 50.4
GTEX-RUSQ-2126-SM-47JXK 50-59 years, male 50.3
GTEX-12WSI-2126-SM-5GCMV 50-59 years, male 50.2
GTEX-144GN-1626-SM-5Q5BU 50-59 years, male 50.0
GTEX-WFON-2026-SM-4LVMW 40-49 years, male 49.4
GTEX-PLZ5-1526-SM-3P5ZX 50-59 years, male 49.3
GTEX-13FLW-2126-SM-5N9FD 50-59 years, male 49.2
GTEX-X3Y1-2626-SM-4PQZI 40-49 years, male 49.1
GTEX-R55E-0726-SM-48FCZ 20-29 years, male 48.9
GTEX-11WQK-2826-SM-5EQKH 50-59 years, male 48.6
GTEX-O5YT-2126-SM-3MJGD 20-29 years, male 48.6
GTEX-11TT1-2226-SM-5GU6B 20-29 years, male 48.5
GTEX-ZDTT-2026-SM-5K7TY 60-69 years, male 48.4
GTEX-13111-1526-SM-5EGJX 50-59 years, male 48.3
GTEX-13OW6-0126-SM-5IJGM 50-59 years, male 47.4
GTEX-R55D-0126-SM-48FEL 50-59 years, male 47.4
GTEX-111FC-1926-SM-5GZYC 60-69 years, male 47.2
GTEX-13NYB-2226-SM-5MR58 40-49 years, male 47.2
GTEX-ZT9X-1426-SM-5DUX1 40-49 years, male 47.2
GTEX-12696-0226-SM-5EGL3 60-69 years, male 46.9
GTEX-VJYA-1426-SM-4KL1Y 60-69 years, male 46.9
GTEX-U8XE-0126-SM-4E3I3 30-39 years, male 46.6
GTEX-T5JC-0726-SM-4DM55 20-29 years, male 46.2
GTEX-XPVG-2226-SM-4B65U 50-59 years, male 45.9
GTEX-NFK9-0126-SM-3LK5H 40-49 years, male 45.8
GTEX-QEG5-0126-SM-4R1JR 20-29 years, male 45.1
GTEX-WVLH-2626-SM-4MVNV 50-59 years, male 44.5
GTEX-XLM4-1526-SM-4AT6D 60-69 years, male 44.4
GTEX-Y9LG-1726-SM-4VBQE 30-39 years, male 44.3
GTEX-OIZI-0126-SM-3NB13 40-49 years, male 44.2
GTEX-X261-2326-SM-4PQYU 50-59 years, male 43.7
GTEX-YJ89-0626-SM-4TT3Z 60-69 years, male 43.4
GTEX-13NZA-2526-SM-5IJFX 60-69 years, male 42.7
GTEX-RN64-2326-SM-48FDW 50-59 years, male 42.6
GTEX-1399Q-2826-SM-5IJEZ 40-49 years, male 42.2
GTEX-1339X-1926-SM-5PNVP 40-49 years, male 41.6
GTEX-13O1R-0726-SM-5IJEI 60-69 years, male 40.4
GTEX-13OVH-0726-SM-5N9BU 70-79 years, male 40.2
GTEX-14A6H-2326-SM-5Q5B5 30-39 years, male 38.9
GTEX-12WSM-1326-SM-5GCP9 60-69 years, male 38.8
GTEX-U8T8-1126-SM-4DXUE 60-69 years, male 38.4
GTEX-P4QR-0226-SM-3NMCH 60-69 years, male 38.0
GTEX-147F4-0626-SM-5LUAK 50-59 years, male 35.9
GTEX-11ONC-2226-SM-5HL6D 60-69 years, male 35.5
GTEX-ZAB4-0126-SM-5CVMG 40-49 years, male 34.8
Show all

TESTIS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

90.0

FANTOM5 sample id

Sample description

Tags Per Million

Testis
Tags Per Million: 90.0
FF:10026-101D8 34,53,86 years, male 104.6
FF:10096-102C6 14-64 years, male 75.3

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