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TISSUE ATLAS PRIMARY DATA VAGINA

GENE/PROTEIN

Antibody validation


Dictionary

Vagina

VAGINA - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:20.5RPKM
FANTOM5:32.3Tags Per Million

VAGINA - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Squamous epithelial cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA029018

 

Antibody CAB026381

 

Squamous epithelial cells

Low   Medium  
   
   
   

VAGINA - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


VAGINA - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

20.5

GTEx sample id

Sample description

RPKM

Vagina
RPKM: 20.5
Samples: 96

Max RPKM: 33.0
Min RPKM: 12.1
Std RPKM: 4.0
Median RPKM: 20.5
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 33.0
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 31.1
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 30.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 29.9
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 27.5
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 26.7
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 26.2
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 26.0
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 25.9
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 25.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 25.3
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 25.0
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 25.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 24.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 24.5
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 24.4
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 24.2
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 24.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 23.9
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 23.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 23.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 23.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 23.4
GTEX-UPIC-1426-SM-4IHLQ 20-29 years, female 23.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 23.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 23.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 23.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 22.6
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 22.3
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 22.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 21.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 21.8
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 21.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 21.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 21.5
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 21.3
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 21.3
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 21.2
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 21.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 21.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 21.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 21.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 21.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 20.9
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 20.8
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 20.6
GTEX-12WSB-2426-SM-5EGJC 60-69 years, female 20.5
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 20.5
GTEX-XUJ4-1626-SM-4BONV 60-69 years, female 20.5
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 20.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 20.0
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 19.9
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 19.8
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 19.8
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 19.7
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 19.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 19.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 19.2
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 19.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 19.0
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 18.9
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 18.7
GTEX-Q734-1426-SM-48TZQ 40-49 years, female 18.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 18.6
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 18.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 18.5
GTEX-11I78-2026-SM-5987C 50-59 years, female 18.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 18.4
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 18.3
GTEX-ZYWO-2026-SM-5GIDA 40-49 years, female 18.1
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 18.0
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 17.6
GTEX-NL3G-2526-SM-4SOIE 60-69 years, female 17.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 17.5
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 17.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 17.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 16.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 16.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 16.8
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 16.5
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 16.5
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 16.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 16.3
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 16.1
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 16.0
GTEX-PWOO-2026-SM-48TDE 40-49 years, female 15.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 15.2
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 15.1
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 14.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 14.9
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 14.9
GTEX-QVJO-2526-SM-4R1KB 60-69 years, female 14.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 14.2
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 14.1
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 13.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 12.1
Show all

VAGINA - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

32.3

FANTOM5 sample id

Sample description

Tags Per Million

Vagina
Tags Per Million: 32.3
FF:10204-103F6 68 years, female 32.3

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.