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ABCG1
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TISSUE ATLAS PRIMARY DATA LIVER

GENE/PROTEIN

Antibody validation


Dictionary

Liver

Tissue proteome

Liver

LIVER - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

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HPA:3.3TPM
GTEx:1.1RPKM
FANTOM5:10.5Tags Per Million

LIVER - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Bile duct cells:Not detected
Hepatocytes:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA031470

 

Antibody HPA031471

 

Bile duct cells

Not detected   Not detected  

Hepatocytes

Medium   Low  
   
   
   

LIVER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

3.3

N/A Female, age 60 Sample 1
TPM: 3.4
overview Male, age 54 Sample 2
TPM: 3.2
Cell types%
Hepatocytes: 80
Fibroblasts: 15
Other cell types: 5
overview Male, age 74 Sample 3
TPM: 2.1
Cell types%
Hepatocytes: 85
Fibroblasts: 5
Other cell types: 10
overview Female, age 62 Sample 4
TPM: 2.4
Cell types%
Hepatocytes: 70
Fibroblasts: 10
Other cell types: 20
overview Male, age 78 Sample 5
TPM: 2.9
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Male, age 53 Sample 6
TPM: 4.8
Cell types%
Hepatocytes: 80
Fibroblasts: 5
Other cell types: 15
overview Male, age 77 Sample 7
TPM: 3.4
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Female, age 72 Sample 8
TPM: 4
Cell types%
Hepatocytes: 50
Fibroblasts: 10
Other cell types: 40
overview Male, age 70 Sample 9
TPM: 1.3
Cell types%
Hepatocytes: 65
Fibroblasts: 10
Other cell types: 25
overview Female, age 23 Sample 10
TPM: 5.1
Cell types%
Hepatocytes: 70
Fibroblasts: 5
Other cell types: 25

LIVER - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

1.1

GTEx sample id

Sample description

RPKM

Liver
RPKM: 1.1
Samples: 119

Max RPKM: 5.5
Min RPKM: 0.1
Std RPKM: 0.9
Median RPKM: 0.8
GTEX-14DAQ-1726-SM-5S2R2 60-69 years, female 5.5
GTEX-ZYT6-0626-SM-5E45V 30-39 years, male 4.8
GTEX-ZTPG-1426-SM-51MT3 20-29 years, female 4.3
GTEX-ZAB4-0826-SM-5LU9D 40-49 years, male 4.1
GTEX-12696-0826-SM-5EGGE 60-69 years, male 3.9
GTEX-131YS-1626-SM-5HL6C 60-69 years, female 3.5
GTEX-12KS4-1326-SM-5LUB3 30-39 years, male 2.8
GTEX-12WSG-0626-SM-5FQTQ 50-59 years, female 2.8
GTEX-ZYY3-0626-SM-5NQ6W 60-69 years, female 2.6
GTEX-145LU-1326-SM-5LU9N 50-59 years, male 2.5
GTEX-WYVS-1926-SM-4PQZ2 40-49 years, female 2.4
GTEX-131XE-0326-SM-5LZVO 50-59 years, male 2.2
GTEX-14C38-1526-SM-5RQJ7 50-59 years, male 2.2
GTEX-12WSD-1426-SM-5GCN9 60-69 years, female 2.1
GTEX-UTHO-2426-SM-4JBHD 60-69 years, male 2.1
GTEX-11GSP-0626-SM-5986T 60-69 years, female 2.0
GTEX-WFON-1726-SM-4LVMQ 40-49 years, male 2.0
GTEX-YB5E-0326-SM-5IFHU 40-49 years, male 2.0
GTEX-11NV4-1326-SM-5HL6V 60-69 years, male 1.9
GTEX-13112-1426-SM-5EGH8 50-59 years, male 1.9
GTEX-13OW6-2626-SM-5IFF2 50-59 years, male 1.8
GTEX-11DXZ-0126-SM-5EGGY 50-59 years, male 1.7
GTEX-11NUK-1226-SM-5P9GM 50-59 years, male 1.7
GTEX-11ZUS-2526-SM-59872 30-39 years, male 1.6
GTEX-XOTO-0826-SM-4B65O 50-59 years, male 1.6
GTEX-11EQ9-0526-SM-5A5JZ 30-39 years, male 1.5
GTEX-REY6-1226-SM-48FDR 60-69 years, male 1.5
GTEX-RM2N-1926-SM-48FCU 50-59 years, male 1.5
GTEX-13N11-0926-SM-5IJG2 50-59 years, female 1.4
GTEX-ZF2S-3026-SM-4WWCH 50-59 years, female 1.4
GTEX-139YR-0226-SM-5IFEM 50-59 years, male 1.3
GTEX-144GM-1326-SM-5LU5E 20-29 years, male 1.3
GTEX-S32W-1926-SM-4AD63 50-59 years, female 1.3
GTEX-QEL4-1226-SM-447A4 50-59 years, male 1.2
GTEX-RWSA-1426-SM-47JXA 40-49 years, male 1.2
GTEX-X3Y1-2726-SM-4PQZH 40-49 years, male 1.2
GTEX-ZF29-2026-SM-4WWB7 60-69 years, female 1.2
GTEX-146FH-1526-SM-5NQBU 50-59 years, female 1.1
GTEX-Q734-0326-SM-48U15 40-49 years, female 1.1
GTEX-S4Z8-0526-SM-4AD4T 60-69 years, male 1.1
GTEX-YECK-1926-SM-4W21H 60-69 years, male 1.1
GTEX-13FLV-0326-SM-5N9DJ 50-59 years, male 1.0
GTEX-RNOR-1426-SM-48FDJ 50-59 years, female 1.0
GTEX-Z9EW-0426-SM-5CVM9 40-49 years, male 1.0
GTEX-ZPU1-0826-SM-57WG2 40-49 years, male 1.0
GTEX-1399R-1226-SM-5P9GF 30-39 years, male 0.9
GTEX-13NZ9-1326-SM-5MR3V 50-59 years, male 0.9
GTEX-1497J-0726-SM-5Q5D1 60-69 years, male 0.9
GTEX-OOBJ-0826-SM-3NB2K 60-69 years, male 0.9
GTEX-QESD-2026-SM-447BI 20-29 years, male 0.9
GTEX-UPK5-1426-SM-4JBHH 40-49 years, male 0.9
GTEX-ZVT3-1626-SM-5GU66 60-69 years, female 0.9
GTEX-11WQC-0726-SM-5EQMR 60-69 years, male 0.8
GTEX-13113-1326-SM-5GCOI 60-69 years, female 0.8
GTEX-13PVR-0126-SM-5S2PY 60-69 years, female 0.8
GTEX-13SLX-1226-SM-5S2Q6 50-59 years, female 0.8
GTEX-147F4-1426-SM-5LUA8 50-59 years, male 0.8
GTEX-QDVN-0826-SM-48TZ2 50-59 years, male 0.8
GTEX-QEG4-1826-SM-4R1JN 30-39 years, male 0.8
GTEX-QV44-0326-SM-4R1KD 50-59 years, male 0.8
GTEX-S33H-1626-SM-4AD68 30-39 years, male 0.8
GTEX-VUSG-0126-SM-4KL1X 50-59 years, male 0.8
GTEX-WZTO-0626-SM-4PQYY 40-49 years, male 0.8
GTEX-YEC4-0826-SM-5P9FV 40-49 years, male 0.8
GTEX-ZAB5-0426-SM-5CVMI 50-59 years, male 0.8
GTEX-131XH-0626-SM-5LZWH 50-59 years, male 0.7
GTEX-13FTW-1126-SM-5J2NV 40-49 years, male 0.7
GTEX-13VXU-0926-SM-5IFFH 50-59 years, male 0.7
GTEX-147JS-1126-SM-5RQIW 60-69 years, male 0.7
GTEX-P78B-1326-SM-3P611 40-49 years, female 0.7
GTEX-PX3G-0826-SM-48TZS 20-29 years, female 0.7
GTEX-Q2AG-1126-SM-48U1P 40-49 years, female 0.7
GTEX-RU72-1426-SM-46MUF 50-59 years, female 0.7
GTEX-TKQ2-1726-SM-4DXUP 50-59 years, male 0.7
GTEX-U3ZN-0226-SM-3DB8D 30-39 years, female 0.7
GTEX-UPIC-0926-SM-4IHLV 20-29 years, female 0.7
GTEX-X261-1726-SM-4PQYT 50-59 years, male 0.7
GTEX-ZVT4-0626-SM-5E45T 50-59 years, female 0.7
GTEX-139TU-0826-SM-5IJFG 60-69 years, male 0.6
GTEX-13QJC-0726-SM-5RQJK 60-69 years, female 0.6
GTEX-XBEC-1526-SM-4AT68 50-59 years, male 0.6
GTEX-1212Z-0226-SM-59HLF 60-69 years, male 0.5
GTEX-12WSM-0726-SM-5GCOW 60-69 years, male 0.5
GTEX-13N2G-0926-SM-5IFGJ 60-69 years, male 0.5
GTEX-14E1K-0326-SM-5S2PE 50-59 years, male 0.5
GTEX-R53T-0326-SM-48FEC 50-59 years, female 0.5
GTEX-RN64-1826-SM-48FDV 50-59 years, male 0.5
GTEX-SJXC-1226-SM-4DM78 60-69 years, male 0.5
GTEX-T6MN-1226-SM-3NMA5 50-59 years, male 0.5
GTEX-X4EP-1026-SM-4QAS5 60-69 years, female 0.5
GTEX-Y5LM-0426-SM-4VBRO 40-49 years, female 0.5
GTEX-11OF3-0726-SM-5BC4Z 60-69 years, male 0.4
GTEX-11ZTS-1426-SM-5EQMM 60-69 years, female 0.4
GTEX-1269C-0626-SM-5FQSS 60-69 years, female 0.4
GTEX-12WSL-0226-SM-5CVMJ 50-59 years, male 0.4
GTEX-139TS-1426-SM-5IFJD 60-69 years, male 0.4
GTEX-13NYB-1026-SM-5IFH3 40-49 years, male 0.4
GTEX-14A5I-1726-SM-5QGQ5 50-59 years, female 0.4
GTEX-RTLS-1326-SM-46MUN 60-69 years, female 0.4
GTEX-WQUQ-1926-SM-4OOSA 60-69 years, male 0.4
GTEX-X4XY-1626-SM-46MVN 60-69 years, male 0.4
GTEX-Y5V5-0926-SM-4VBPZ 60-69 years, female 0.4
GTEX-YFC4-1526-SM-5IFJS 40-49 years, female 0.4
GTEX-ZVP2-0626-SM-51MSO 50-59 years, male 0.4
GTEX-ZZPU-0426-SM-5GZYH 50-59 years, female 0.4
GTEX-12WSI-0226-SM-5GCNA 50-59 years, male 0.3
GTEX-12ZZZ-1326-SM-59HKW 60-69 years, male 0.3
GTEX-132NY-0926-SM-5P9G3 60-69 years, male 0.3
GTEX-1399T-0826-SM-5IFES 60-69 years, male 0.3
GTEX-145MO-2326-SM-5NQ9K 60-69 years, male 0.3
GTEX-14AS3-0126-SM-5Q5F4 40-49 years, female 0.3
GTEX-X4EO-1126-SM-4QARQ 60-69 years, female 0.3
GTEX-11DXY-0526-SM-5EGGQ 60-69 years, male 0.2
GTEX-11ZVC-0726-SM-5FQT9 50-59 years, female 0.2
GTEX-13NZB-0626-SM-5IFH6 30-39 years, male 0.2
GTEX-145MF-0826-SM-5QGQA 50-59 years, male 0.2
GTEX-14753-1626-SM-5NQ9L 60-69 years, male 0.2
GTEX-13FTZ-0726-SM-5IFFY 60-69 years, male 0.1
GTEX-13O3O-1826-SM-5IFGW 60-69 years, female 0.1
Show all

LIVER - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

10.5

FANTOM5 sample id

Sample description

Tags Per Million

Liver
Tags Per Million: 10.5
FF:10018-101C9 64,69,70 years, mixed 10.5

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