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TISSUE ATLAS PRIMARY DATA LIVER

GENE/PROTEIN

Antibody validation


Dictionary

Liver

Tissue proteome

Liver

LIVER - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:68.5TPM
GTEx:29.3RPKM
FANTOM5:220.4Tags Per Million

LIVER - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Bile duct cells:Medium
Hepatocytes:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB018702

 

Antibody CAB069993

 

Bile duct cells

Medium   High  

Hepatocytes

Low   Medium  
   
   
   

LIVER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

68.5

N/A Female, age 60 Sample 1
TPM: 69.7
overview Male, age 54 Sample 2
TPM: 76.3
Cell types%
Hepatocytes: 80
Fibroblasts: 15
Other cell types: 5
overview Male, age 74 Sample 3
TPM: 75.8
Cell types%
Hepatocytes: 85
Fibroblasts: 5
Other cell types: 10
overview Female, age 62 Sample 4
TPM: 74.9
Cell types%
Hepatocytes: 70
Fibroblasts: 10
Other cell types: 20
overview Male, age 78 Sample 5
TPM: 48.4
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Male, age 53 Sample 6
TPM: 67.9
Cell types%
Hepatocytes: 80
Fibroblasts: 5
Other cell types: 15
overview Male, age 77 Sample 7
TPM: 98.7
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Female, age 72 Sample 8
TPM: 47.3
Cell types%
Hepatocytes: 50
Fibroblasts: 10
Other cell types: 40
overview Male, age 70 Sample 9
TPM: 54.2
Cell types%
Hepatocytes: 65
Fibroblasts: 10
Other cell types: 25
overview Female, age 23 Sample 10
TPM: 72.2
Cell types%
Hepatocytes: 70
Fibroblasts: 5
Other cell types: 25

LIVER - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

29.3

GTEx sample id

Sample description

RPKM

Liver
RPKM: 29.3
Samples: 119

Max RPKM: 108.0
Min RPKM: 5.4
Std RPKM: 18.5
Median RPKM: 23.5
GTEX-144GM-1326-SM-5LU5E 20-29 years, male 108.0
GTEX-QDVN-0826-SM-48TZ2 50-59 years, male 89.3
GTEX-S32W-1926-SM-4AD63 50-59 years, female 77.5
GTEX-X4XY-1626-SM-46MVN 60-69 years, male 72.4
GTEX-ZTPG-1426-SM-51MT3 20-29 years, female 68.2
GTEX-14C38-1526-SM-5RQJ7 50-59 years, male 65.6
GTEX-1497J-0726-SM-5Q5D1 60-69 years, male 64.3
GTEX-131XE-0326-SM-5LZVO 50-59 years, male 63.7
GTEX-RWSA-1426-SM-47JXA 40-49 years, male 62.1
GTEX-YB5E-0326-SM-5IFHU 40-49 years, male 59.1
GTEX-QEL4-1226-SM-447A4 50-59 years, male 58.8
GTEX-VUSG-0126-SM-4KL1X 50-59 years, male 57.6
GTEX-ZPU1-0826-SM-57WG2 40-49 years, male 55.6
GTEX-TKQ2-1726-SM-4DXUP 50-59 years, male 52.8
GTEX-13N11-0926-SM-5IJG2 50-59 years, female 52.0
GTEX-RM2N-1926-SM-48FCU 50-59 years, male 51.4
GTEX-13O3O-1826-SM-5IFGW 60-69 years, female 50.0
GTEX-13NZ9-1326-SM-5MR3V 50-59 years, male 49.6
GTEX-12WSG-0626-SM-5FQTQ 50-59 years, female 48.4
GTEX-YEC4-0826-SM-5P9FV 40-49 years, male 47.4
GTEX-Y5LM-0426-SM-4VBRO 40-49 years, female 47.0
GTEX-13FTW-1126-SM-5J2NV 40-49 years, male 45.2
GTEX-146FH-1526-SM-5NQBU 50-59 years, female 45.2
GTEX-11EQ9-0526-SM-5A5JZ 30-39 years, male 43.3
GTEX-12WSL-0226-SM-5CVMJ 50-59 years, male 43.2
GTEX-Z9EW-0426-SM-5CVM9 40-49 years, male 40.7
GTEX-REY6-1226-SM-48FDR 60-69 years, male 40.6
GTEX-12696-0826-SM-5EGGE 60-69 years, male 39.4
GTEX-R53T-0326-SM-48FEC 50-59 years, female 39.0
GTEX-13PVR-0126-SM-5S2PY 60-69 years, female 37.6
GTEX-139YR-0226-SM-5IFEM 50-59 years, male 37.5
GTEX-S4Z8-0526-SM-4AD4T 60-69 years, male 37.2
GTEX-ZF29-2026-SM-4WWB7 60-69 years, female 37.2
GTEX-Q734-0326-SM-48U15 40-49 years, female 35.2
GTEX-U3ZN-0226-SM-3DB8D 30-39 years, female 35.2
GTEX-X4EP-1026-SM-4QAS5 60-69 years, female 33.7
GTEX-ZAB5-0426-SM-5CVMI 50-59 years, male 33.5
GTEX-ZVP2-0626-SM-51MSO 50-59 years, male 33.4
GTEX-132NY-0926-SM-5P9G3 60-69 years, male 31.8
GTEX-QESD-2026-SM-447BI 20-29 years, male 31.6
GTEX-14AS3-0126-SM-5Q5F4 40-49 years, female 31.2
GTEX-WFON-1726-SM-4LVMQ 40-49 years, male 30.9
GTEX-UTHO-2426-SM-4JBHD 60-69 years, male 30.6
GTEX-P78B-1326-SM-3P611 40-49 years, female 30.4
GTEX-1399R-1226-SM-5P9GF 30-39 years, male 29.5
GTEX-ZYY3-0626-SM-5NQ6W 60-69 years, female 29.0
GTEX-WYVS-1926-SM-4PQZ2 40-49 years, female 27.8
GTEX-X3Y1-2726-SM-4PQZH 40-49 years, male 27.4
GTEX-UPK5-1426-SM-4JBHH 40-49 years, male 27.1
GTEX-13113-1326-SM-5GCOI 60-69 years, female 26.8
GTEX-X4EO-1126-SM-4QARQ 60-69 years, female 26.5
GTEX-S33H-1626-SM-4AD68 30-39 years, male 26.4
GTEX-ZZPU-0426-SM-5GZYH 50-59 years, female 26.2
GTEX-14E1K-0326-SM-5S2PE 50-59 years, male 25.8
GTEX-ZF2S-3026-SM-4WWCH 50-59 years, female 25.8
GTEX-11DXZ-0126-SM-5EGGY 50-59 years, male 25.4
GTEX-ZVT4-0626-SM-5E45T 50-59 years, female 25.4
GTEX-13FLV-0326-SM-5N9DJ 50-59 years, male 24.7
GTEX-ZAB4-0826-SM-5LU9D 40-49 years, male 23.6
GTEX-QV44-0326-SM-4R1KD 50-59 years, male 23.5
GTEX-X261-1726-SM-4PQYT 50-59 years, male 23.5
GTEX-13SLX-1226-SM-5S2Q6 50-59 years, female 23.4
GTEX-UPIC-0926-SM-4IHLV 20-29 years, female 23.4
GTEX-WQUQ-1926-SM-4OOSA 60-69 years, male 23.2
GTEX-145MF-0826-SM-5QGQA 50-59 years, male 22.4
GTEX-12KS4-1326-SM-5LUB3 30-39 years, male 22.0
GTEX-11WQC-0726-SM-5EQMR 60-69 years, male 21.6
GTEX-13N2G-0926-SM-5IFGJ 60-69 years, male 20.8
GTEX-PX3G-0826-SM-48TZS 20-29 years, female 20.8
GTEX-YFC4-1526-SM-5IFJS 40-49 years, female 20.5
GTEX-RU72-1426-SM-46MUF 50-59 years, female 19.5
GTEX-12WSI-0226-SM-5GCNA 50-59 years, male 19.3
GTEX-147JS-1126-SM-5RQIW 60-69 years, male 19.1
GTEX-OOBJ-0826-SM-3NB2K 60-69 years, male 19.0
GTEX-ZYT6-0626-SM-5E45V 30-39 years, male 18.6
GTEX-1399T-0826-SM-5IFES 60-69 years, male 18.2
GTEX-XOTO-0826-SM-4B65O 50-59 years, male 18.2
GTEX-14DAQ-1726-SM-5S2R2 60-69 years, female 17.5
GTEX-139TU-0826-SM-5IJFG 60-69 years, male 17.4
GTEX-QEG4-1826-SM-4R1JN 30-39 years, male 16.9
GTEX-14A5I-1726-SM-5QGQ5 50-59 years, female 16.8
GTEX-139TS-1426-SM-5IFJD 60-69 years, male 16.7
GTEX-ZVT3-1626-SM-5GU66 60-69 years, female 16.7
GTEX-11NUK-1226-SM-5P9GM 50-59 years, male 16.6
GTEX-13OW6-2626-SM-5IFF2 50-59 years, male 16.5
GTEX-12WSM-0726-SM-5GCOW 60-69 years, male 16.1
GTEX-12WSD-1426-SM-5GCN9 60-69 years, female 16.0
GTEX-13QJC-0726-SM-5RQJK 60-69 years, female 16.0
GTEX-13NZB-0626-SM-5IFH6 30-39 years, male 15.9
GTEX-147F4-1426-SM-5LUA8 50-59 years, male 15.5
GTEX-RTLS-1326-SM-46MUN 60-69 years, female 15.5
GTEX-13NYB-1026-SM-5IFH3 40-49 years, male 14.9
GTEX-13VXU-0926-SM-5IFFH 50-59 years, male 14.9
GTEX-145MO-2326-SM-5NQ9K 60-69 years, male 14.7
GTEX-11DXY-0526-SM-5EGGQ 60-69 years, male 13.9
GTEX-Y5V5-0926-SM-4VBPZ 60-69 years, female 13.8
GTEX-T6MN-1226-SM-3NMA5 50-59 years, male 13.7
GTEX-1212Z-0226-SM-59HLF 60-69 years, male 13.5
GTEX-YECK-1926-SM-4W21H 60-69 years, male 13.5
GTEX-11OF3-0726-SM-5BC4Z 60-69 years, male 13.4
GTEX-13112-1426-SM-5EGH8 50-59 years, male 12.9
GTEX-1269C-0626-SM-5FQSS 60-69 years, female 12.8
GTEX-RNOR-1426-SM-48FDJ 50-59 years, female 12.8
GTEX-XBEC-1526-SM-4AT68 50-59 years, male 12.4
GTEX-14753-1626-SM-5NQ9L 60-69 years, male 12.3
GTEX-Q2AG-1126-SM-48U1P 40-49 years, female 12.1
GTEX-131YS-1626-SM-5HL6C 60-69 years, female 12.0
GTEX-11ZTS-1426-SM-5EQMM 60-69 years, female 11.8
GTEX-11ZVC-0726-SM-5FQT9 50-59 years, female 11.7
GTEX-11GSP-0626-SM-5986T 60-69 years, female 11.5
GTEX-11NV4-1326-SM-5HL6V 60-69 years, male 11.4
GTEX-13FTZ-0726-SM-5IFFY 60-69 years, male 11.4
GTEX-WZTO-0626-SM-4PQYY 40-49 years, male 11.4
GTEX-11ZUS-2526-SM-59872 30-39 years, male 11.1
GTEX-131XH-0626-SM-5LZWH 50-59 years, male 11.1
GTEX-145LU-1326-SM-5LU9N 50-59 years, male 11.0
GTEX-SJXC-1226-SM-4DM78 60-69 years, male 10.5
GTEX-RN64-1826-SM-48FDV 50-59 years, male 9.7
GTEX-12ZZZ-1326-SM-59HKW 60-69 years, male 5.4
Show all

LIVER - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

220.4

FANTOM5 sample id

Sample description

Tags Per Million

Liver
Tags Per Million: 220.4
FF:10018-101C9 64,69,70 years, mixed 220.4

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