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TISSUE ATLAS PRIMARY DATA TESTIS

GENE/PROTEIN

Antibody validation


Dictionary

Testis

Tissue proteome

Testis

TESTIS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:265.5TPM
GTEx:67.1RPKM
FANTOM5:230.8Tags Per Million

TESTIS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in seminiferous ducts:Medium
Leydig cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB018702

 

Antibody CAB069993

 

Cells in seminiferous ducts

Medium   Medium  

Leydig cells

Low   Medium  
   
   
   

TESTIS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

265.5

overview Male, age 56 Sample 1
TPM: 350.1
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34 Sample 2
TPM: 259.1
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25
overview Male, age 62 Sample 3
TPM: 252.6
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 34 Sample 4
TPM: 440.6
Cell types%
Cells in seminiferous ducts: 60
Other cell types: 40
overview Male, age 26 Sample 5
TPM: 233.6
Cell types%
Cells in seminiferous ducts: 55
Other cell types: 45
overview Male, age 50 Sample 6
TPM: 204.7
Cell types%
Cells in seminiferous ducts: 85
Other cell types: 15
overview Male, age 37 Sample 7
TPM: 185.6
Cell types%
Cells in seminiferous ducts: 35
Other cell types: 65
overview Male, age 51 Sample 8
TPM: 226.4
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34 Sample 9
TPM: 282.2
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 26 Sample 10
TPM: 219.8
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25

TESTIS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

67.1

GTEx sample id

Sample description

RPKM

Testis
RPKM: 67.1
Samples: 172

Max RPKM: 124.1
Min RPKM: 20.4
Std RPKM: 19.2
Median RPKM: 65.3
GTEX-WFG8-1926-SM-4LVM1 20-29 years, male 124.1
GTEX-YB5E-1926-SM-5IFIG 40-49 years, male 123.3
GTEX-11TT1-2226-SM-5GU6B 20-29 years, male 122.8
GTEX-11WQK-2826-SM-5EQKH 50-59 years, male 121.1
GTEX-ZTX8-1126-SM-51MRM 20-29 years, male 112.5
GTEX-11P7K-1026-SM-5HL6Y 30-39 years, male 107.7
GTEX-P4QR-0226-SM-3NMCH 60-69 years, male 107.0
GTEX-PLZ5-1526-SM-3P5ZX 50-59 years, male 106.4
GTEX-1339X-1926-SM-5PNVP 40-49 years, male 104.6
GTEX-WFON-2026-SM-4LVMW 40-49 years, male 101.7
GTEX-ZDTT-2026-SM-5K7TY 60-69 years, male 100.2
GTEX-144GN-1626-SM-5Q5BU 50-59 years, male 97.4
GTEX-Y8E4-2226-SM-5LU94 40-49 years, male 96.1
GTEX-S3XE-1526-SM-4AD5A 50-59 years, male 95.7
GTEX-1399Q-2826-SM-5IJEZ 40-49 years, male 92.1
GTEX-13FTW-1326-SM-5LZZD 40-49 years, male 92.1
GTEX-QEG5-0126-SM-4R1JR 20-29 years, male 91.5
GTEX-147F4-0626-SM-5LUAK 50-59 years, male 90.3
GTEX-QLQ7-1426-SM-4R1JX 60-69 years, male 90.3
GTEX-OIZI-0126-SM-3NB13 40-49 years, male 90.0
GTEX-14A6H-2326-SM-5Q5B5 30-39 years, male 88.4
GTEX-WHSB-2126-SM-4M1XF 50-59 years, male 88.3
GTEX-U8T8-1126-SM-4DXUE 60-69 years, male 88.0
GTEX-XGQ4-2026-SM-4AT6G 50-59 years, male 87.4
GTEX-13NYB-2226-SM-5MR58 40-49 years, male 86.8
GTEX-O5YT-2126-SM-3MJGD 20-29 years, male 86.8
GTEX-145LT-0426-SM-5LUAP 40-49 years, male 86.7
GTEX-13OVH-0726-SM-5N9BU 70-79 years, male 86.5
GTEX-ZAB4-0126-SM-5CVMG 40-49 years, male 85.9
GTEX-139T6-1226-SM-5IFFC 50-59 years, male 83.1
GTEX-13OW6-0126-SM-5IJGM 50-59 years, male 82.9
GTEX-13O61-2026-SM-5J2M6 60-69 years, male 82.2
GTEX-RWSA-2426-SM-47JXR 40-49 years, male 81.9
GTEX-S4Q7-1226-SM-4AD5I 20-29 years, male 81.8
GTEX-Y9LG-1726-SM-4VBQE 30-39 years, male 81.5
GTEX-YFCO-1726-SM-4W21S 40-49 years, male 81.5
GTEX-XMK1-2026-SM-4B65K 40-49 years, male 80.8
GTEX-QV44-1726-SM-4R1KG 50-59 years, male 79.4
GTEX-ZT9W-2226-SM-57WFU 50-59 years, male 79.1
GTEX-S33H-0126-SM-4AD62 30-39 years, male 78.9
GTEX-11ONC-2226-SM-5HL6D 60-69 years, male 78.7
GTEX-1399R-1626-SM-5P9GG 30-39 years, male 78.3
GTEX-XPT6-1626-SM-4B655 20-29 years, male 78.1
GTEX-11O72-0726-SM-5P9GO 40-49 years, male 77.7
GTEX-P4QS-2126-SM-3NMCF 60-69 years, male 77.4
GTEX-ZVZP-2226-SM-57WBF 50-59 years, male 77.2
GTEX-13O21-1226-SM-5J2MK 50-59 years, male 77.0
GTEX-XBED-2026-SM-4AT5D 60-69 years, male 77.0
GTEX-YJ89-0626-SM-4TT3Z 60-69 years, male 77.0
GTEX-XPVG-2226-SM-4B65U 50-59 years, male 76.6
GTEX-Q2AH-1526-SM-48TZG 40-49 years, male 76.4
GTEX-TKQ1-0926-SM-4DXU2 30-39 years, male 76.0
GTEX-QMRM-1526-SM-4R1K6 50-59 years, male 75.8
GTEX-YF7O-2026-SM-4W1YE 50-59 years, male 75.6
GTEX-T5JC-0726-SM-4DM55 20-29 years, male 75.2
GTEX-R55C-1426-SM-48FED 40-49 years, male 74.3
GTEX-NFK9-0126-SM-3LK5H 40-49 years, male 74.0
GTEX-VJYA-1426-SM-4KL1Y 60-69 years, male 73.8
GTEX-132QS-1226-SM-5P9GD 60-69 years, male 73.6
GTEX-ZDYS-1326-SM-5IJFF 50-59 years, male 73.6
GTEX-U3ZH-1526-SM-4DXV1 30-39 years, male 72.5
GTEX-12WSM-1326-SM-5GCP9 60-69 years, male 72.2
GTEX-12C56-1426-SM-5FQSW 20-29 years, male 71.9
GTEX-ZUA1-2726-SM-59HLJ 40-49 years, male 71.9
GTEX-139TT-2226-SM-5LZWO 60-69 years, male 71.7
GTEX-U4B1-1526-SM-4DXSL 40-49 years, male 71.6
GTEX-S7SE-0326-SM-4AT5Q 50-59 years, male 71.1
GTEX-QLQW-1026-SM-447A9 30-39 years, male 70.1
GTEX-ZZ64-1126-SM-5GZXY 20-29 years, male 69.9
GTEX-U3ZM-1626-SM-4DXSK 40-49 years, male 69.5
GTEX-X261-2326-SM-4PQYU 50-59 years, male 69.4
GTEX-ZPU1-2126-SM-57WED 40-49 years, male 69.1
GTEX-RN64-2326-SM-48FDW 50-59 years, male 69.0
GTEX-Y5V6-1726-SM-4VDSZ 60-69 years, male 69.0
GTEX-X3Y1-2626-SM-4PQZI 40-49 years, male 68.8
GTEX-ZYT6-2726-SM-5GICP 30-39 years, male 68.8
GTEX-SUCS-1326-SM-4DM5T 70-79 years, male 68.6
GTEX-111YS-2026-SM-5EGGL 60-69 years, male 67.6
GTEX-R55D-0126-SM-48FEL 50-59 years, male 67.3
GTEX-TKQ2-1526-SM-4DXUN 50-59 years, male 67.3
GTEX-OIZH-2126-SM-3NB1P 50-59 years, male 67.2
GTEX-ZVTK-0126-SM-57WDG 20-29 years, male 66.6
GTEX-12WSI-2126-SM-5GCMV 50-59 years, male 66.5
GTEX-SNOS-1126-SM-4DM67 40-49 years, male 66.3
GTEX-YEC4-1526-SM-4W1YU 40-49 years, male 66.1
GTEX-13NZB-2026-SM-5MR4M 30-39 years, male 65.4
GTEX-YEC3-1726-SM-5IFIK 50-59 years, male 65.2
GTEX-111CU-1726-SM-5EGHM 50-59 years, male 64.8
GTEX-11P82-1526-SM-5BC5M 20-29 years, male 64.7
GTEX-ZV7C-2026-SM-5NQ8F 50-59 years, male 64.5
GTEX-T8EM-0126-SM-4DM5R 40-49 years, male 64.3
GTEX-13FLW-2126-SM-5N9FD 50-59 years, male 64.2
GTEX-Q2AI-1226-SM-48U14 40-49 years, male 64.1
GTEX-PW2O-1426-SM-48TCD 20-29 years, male 63.8
GTEX-11EQ9-1926-SM-5PNVV 30-39 years, male 63.3
GTEX-RM2N-1326-SM-48FCW 50-59 years, male 62.9
GTEX-12WSH-0326-SM-5GCNH 50-59 years, male 62.5
GTEX-ZQUD-2026-SM-51MSM 30-39 years, male 62.5
GTEX-1212Z-0326-SM-5FQSJ 60-69 years, male 62.1
GTEX-ZA64-1626-SM-5CVME 20-29 years, male 62.1
GTEX-XLM4-1526-SM-4AT6D 60-69 years, male 61.4
GTEX-U8XE-0126-SM-4E3I3 30-39 years, male 60.2
GTEX-WZTO-0326-SM-4PQYZ 40-49 years, male 60.2
GTEX-11DXZ-2126-SM-59881 50-59 years, male 59.9
GTEX-11EI6-2226-SM-5EGJM 60-69 years, male 59.9
GTEX-ZT9X-1426-SM-5DUX1 40-49 years, male 59.8
GTEX-V955-1926-SM-4KL1L 60-69 years, male 59.4
GTEX-145MH-2326-SM-5O9AW 50-59 years, male 59.2
GTEX-OXRL-2126-SM-3NM98 50-59 years, male 59.2
GTEX-WVLH-2626-SM-4MVNV 50-59 years, male 59.2
GTEX-12ZZY-0126-SM-5LZV2 60-69 years, male 58.5
GTEX-13111-1526-SM-5EGJX 50-59 years, male 58.2
GTEX-OHPM-2126-SM-3LK75 50-59 years, male 58.1
GTEX-XBEC-0126-SM-4GIDT 50-59 years, male 57.7
GTEX-12696-0226-SM-5EGL3 60-69 years, male 57.3
GTEX-131XE-0426-SM-5IJF4 50-59 years, male 57.3
GTEX-SNMC-1026-SM-4DM7K 20-29 years, male 56.9
GTEX-13N2G-0126-SM-5N9DV 60-69 years, male 56.8
GTEX-144GL-0726-SM-5LU4P 50-59 years, male 56.7
GTEX-ZTSS-1526-SM-51MTC 40-49 years, male 56.5
GTEX-111FC-1926-SM-5GZYC 60-69 years, male 56.3
GTEX-147JS-0126-SM-5S2TW 60-69 years, male 56.3
GTEX-ZYFC-0126-SM-5GIEH 50-59 years, male 56.0
GTEX-144GM-0426-SM-5Q5C8 20-29 years, male 55.9
GTEX-145MO-0126-SM-5S2QU 60-69 years, male 55.8
GTEX-13OW5-2526-SM-5L3I1 60-69 years, male 55.3
GTEX-139TS-1726-SM-5IJG5 60-69 years, male 55.0
GTEX-11OF3-1826-SM-5987N 60-69 years, male 54.3
GTEX-11NSD-1026-SM-5N9BE 20-29 years, male 54.1
GTEX-R55E-0726-SM-48FCZ 20-29 years, male 54.1
GTEX-11EQ8-1426-SM-5EGJR 60-69 years, male 53.8
GTEX-117XS-2026-SM-5GID1 60-69 years, male 53.3
GTEX-11NUK-2626-SM-5A5MB 50-59 years, male 53.2
GTEX-XAJ8-1326-SM-47JYT 40-49 years, male 53.0
GTEX-11GS4-2026-SM-5N9CP 60-69 years, male 52.5
GTEX-V1D1-2126-SM-4JBH4 50-59 years, male 51.7
GTEX-UPJH-0126-SM-4IHLL 50-59 years, male 51.5
GTEX-13NZA-2526-SM-5IJFX 60-69 years, male 51.3
GTEX-S95S-1126-SM-4B64E 60-69 years, male 51.1
GTEX-14753-0626-SM-5Q5CY 60-69 years, male 50.3
GTEX-OOBJ-2126-SM-3NB1N 60-69 years, male 50.0
GTEX-13VXU-0726-SM-5J2O7 50-59 years, male 49.8
GTEX-RUSQ-2126-SM-47JXK 50-59 years, male 49.1
GTEX-REY6-0126-SM-48FDT 60-69 years, male 48.6
GTEX-WOFM-1126-SM-4OOSB 20-29 years, male 48.3
GTEX-ZAB5-2426-SM-5CVMW 50-59 years, male 48.0
GTEX-13O1R-0726-SM-5IJEI 60-69 years, male 47.7
GTEX-Z93S-1726-SM-5HL8G 50-59 years, male 47.5
GTEX-13OVL-0426-SM-5IFG6 50-59 years, male 47.3
GTEX-13N1W-2626-SM-5IJEP 70-79 years, male 47.1
GTEX-OOBK-2126-SM-3LK5T 40-49 years, male 46.9
GTEX-117YW-1526-SM-5EGGP 50-59 years, male 46.3
GTEX-S7PM-0626-SM-4AD4Q 60-69 years, male 45.1
GTEX-X5EB-2026-SM-4E3KA 40-49 years, male 44.8
GTEX-12WSL-2326-SM-5DUXQ 50-59 years, male 44.7
GTEX-QV31-1126-SM-4R1K4 30-39 years, male 43.5
GTEX-WH7G-1926-SM-4LVMM 40-49 years, male 43.3
GTEX-Y111-2426-SM-4TT23 50-59 years, male 42.3
GTEX-T6MN-2026-SM-4DM7L 50-59 years, male 42.0
GTEX-QEG4-0126-SM-48TZE 30-39 years, male 41.7
GTEX-N7MS-0126-SM-3TW8O 60-69 years, male 41.5
GTEX-XQ3S-2726-SM-4BOP2 20-29 years, male 41.3
GTEX-11LCK-2326-SM-5HL53 30-39 years, male 41.1
GTEX-13112-0226-SM-5P9IV 50-59 years, male 38.6
GTEX-WK11-0326-SM-4OOS6 50-59 years, male 37.9
GTEX-11ZUS-2726-SM-5FQUA 30-39 years, male 36.8
GTEX-14ABY-0626-SM-5Q5C9 50-59 years, male 35.9
GTEX-11TUW-2226-SM-5EQL9 60-69 years, male 35.4
GTEX-11WQC-2326-SM-5EQKE 60-69 years, male 30.0
GTEX-11NV4-1726-SM-5N9FC 60-69 years, male 29.1
GTEX-13FHP-2826-SM-5IJFW 50-59 years, male 28.1
GTEX-111VG-1926-SM-5GIDO 60-69 years, male 20.4
Show all

TESTIS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

230.8

FANTOM5 sample id

Sample description

Tags Per Million

Testis
Tags Per Million: 230.8
FF:10026-101D8 34,53,86 years, male 239.7
FF:10096-102C6 14-64 years, male 221.9

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