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TISSUE ATLAS PRIMARY DATA OVARY

GENE/PROTEIN

Antibody validation


Dictionary

Ovary

Tissue proteome

Ovary

OVARY - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:35.9TPM
GTEx:10.4RPKM
FANTOM5:37.0Tags Per Million

OVARY - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Ovarian stroma cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA015629

 

Ovarian stroma cells

Not detected  
 
 
 

OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

35.9

overview Female, age 64 Sample 1
TPM: 33.1
Cell types%
Stromal cells: 70
Smooth muscle cells: 15
Other cell types: 15
overview Female, age 52 Sample 2
TPM: 36.5
Cell types%
Stromal cells: 95
Other cell types: 5
overview Female, age 80 Sample 3
TPM: 38.1
Cell types%
Stromal cells: 70
Smooth muscle cells: 25
Other cell types: 5

OVARY - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

10.4

GTEx sample id

Sample description

RPKM

Ovary
RPKM: 10.4
Samples: 97

Max RPKM: 14.1
Min RPKM: 5.1
Std RPKM: 1.8
Median RPKM: 10.4
GTEX-13QIC-1526-SM-5IJFL 60-69 years, female 14.1
GTEX-11XUK-1626-SM-5GU5O 40-49 years, female 13.8
GTEX-ZVT2-0326-SM-5E44G 50-59 years, female 13.8
GTEX-ZYFG-1726-SM-5GZZB 60-69 years, female 13.8
GTEX-ZZPU-2126-SM-5EGIU 50-59 years, female 13.8
GTEX-RU1J-0826-SM-46MUU 20-29 years, female 13.5
GTEX-12WSD-2726-SM-59HLR 60-69 years, female 13.2
GTEX-P4QT-2426-SM-3NMCL 50-59 years, female 13.2
GTEX-11I78-1926-SM-59878 50-59 years, female 13.0
GTEX-U3ZN-1026-SM-4DXTC 30-39 years, female 13.0
GTEX-S4P3-0926-SM-4AD54 50-59 years, female 12.8
GTEX-11VI4-1026-SM-5EQM1 40-49 years, female 12.5
GTEX-13FTX-0926-SM-5IFF7 20-29 years, female 12.5
GTEX-145ME-1226-SM-5SIB6 40-49 years, female 12.4
GTEX-11DXX-1426-SM-5GIDU 60-69 years, female 12.2
GTEX-14AS3-1326-SM-5RQJE 40-49 years, female 12.2
GTEX-Y3IK-2026-SM-4YCDG 50-59 years, female 12.2
GTEX-11P81-1526-SM-5P9GS 30-39 years, female 12.1
GTEX-13W3W-1526-SM-5LU5I 60-69 years, female 12.0
GTEX-RU72-2226-SM-46MUE 50-59 years, female 12.0
GTEX-W5WG-0926-SM-4RTX9 50-59 years, female 12.0
GTEX-13N11-0526-SM-5IJFI 50-59 years, female 11.9
GTEX-POMQ-1426-SM-3P61D 20-29 years, female 11.9
GTEX-ZYWO-1926-SM-5E456 40-49 years, female 11.9
GTEX-ZLWG-0926-SM-4WWC3 50-59 years, female 11.7
GTEX-12WSK-1926-SM-5LZVK 40-49 years, female 11.6
GTEX-S341-0726-SM-4AD5R 40-49 years, female 11.6
GTEX-TMMY-1726-SM-4DXTD 40-49 years, female 11.6
GTEX-11ZVC-1426-SM-5EGGA 50-59 years, female 11.4
GTEX-PWCY-1326-SM-48TCU 20-29 years, female 11.4
GTEX-ZVT3-2626-SM-5GU5L 60-69 years, female 11.4
GTEX-PX3G-2426-SM-48TZZ 20-29 years, female 11.3
GTEX-11EMC-1726-SM-5H11P 60-69 years, female 11.2
GTEX-1399S-2126-SM-5J2MH 30-39 years, female 11.2
GTEX-ZP4G-0626-SM-4WWF1 20-29 years, female 11.2
GTEX-TSE9-2226-SM-4DXUR 60-69 years, female 11.1
GTEX-YJ8O-1026-SM-5CVM5 40-49 years, female 11.1
GTEX-XUW1-0126-SM-4BOOQ 50-59 years, female 11.0
GTEX-YFC4-2726-SM-5IFJW 40-49 years, female 11.0
GTEX-ZYY3-2726-SM-5EGH4 60-69 years, female 11.0
GTEX-P78B-1926-SM-3P616 40-49 years, female 10.9
GTEX-T2IS-2026-SM-4DM6W 20-29 years, female 10.9
GTEX-Y114-1726-SM-4TT7U 50-59 years, female 10.8
GTEX-OHPK-2426-SM-3MJGH 50-59 years, female 10.7
GTEX-Q734-0726-SM-48TZP 40-49 years, female 10.7
GTEX-TML8-0926-SM-4DXSJ 40-49 years, female 10.7
GTEX-133LE-1226-SM-5IFGC 20-29 years, female 10.6
GTEX-XUJ4-1326-SM-4BOQ9 60-69 years, female 10.6
GTEX-11EM3-1726-SM-5N9D1 20-29 years, female 10.4
GTEX-11ZTS-1926-SM-5CVLA 60-69 years, female 10.3
GTEX-RWS6-1026-SM-47JXD 60-69 years, female 10.3
GTEX-S7SF-1326-SM-4AD4P 20-29 years, female 10.3
GTEX-13PL7-2326-SM-5L3FY 60-69 years, female 10.1
GTEX-13U4I-2126-SM-5LU55 40-49 years, female 10.0
GTEX-P4PP-2426-SM-3P61L 30-39 years, female 10.0
GTEX-UJHI-1226-SM-4IHLR 50-59 years, female 10.0
GTEX-ZPIC-1426-SM-4WWCP 40-49 years, female 10.0
GTEX-11GSP-0226-SM-5A5KV 60-69 years, female 9.9
GTEX-11ZTT-1826-SM-5CVLN 60-69 years, female 9.9
GTEX-12WSG-1426-SM-5FQUK 50-59 years, female 9.9
GTEX-XYKS-1726-SM-4E3IO 60-69 years, female 9.9
GTEX-12WSJ-1226-SM-5LU91 40-49 years, female 9.8
GTEX-139D8-2426-SM-5KM3A 30-39 years, female 9.7
GTEX-1313W-2726-SM-5P9IX 50-59 years, female 9.6
GTEX-1269C-1826-SM-5N9E1 60-69 years, female 9.4
GTEX-146FH-2526-SM-5Q5BP 50-59 years, female 9.4
GTEX-12ZZX-2026-SM-5LZV9 40-49 years, female 9.3
GTEX-13VXT-1526-SM-5LU3J 20-29 years, female 9.3
GTEX-S32W-1226-SM-4AD67 50-59 years, female 9.3
GTEX-13O3O-2726-SM-5KM35 60-69 years, female 9.2
GTEX-PWN1-2426-SM-48TDD 40-49 years, female 9.2
GTEX-XMD3-2326-SM-4AT5H 50-59 years, female 9.2
GTEX-131YS-2226-SM-5P9G8 60-69 years, female 9.1
GTEX-QVJO-3126-SM-4R1KC 60-69 years, female 9.1
GTEX-ZAJG-2726-SM-5S2MU 50-59 years, female 9.1
GTEX-X8HC-2726-SM-46MUA 50-59 years, female 9.0
GTEX-XV7Q-1426-SM-4BRWA 40-49 years, female 9.0
GTEX-132AR-1426-SM-5IFF1 50-59 years, female 8.9
GTEX-RTLS-2326-SM-46MUH 60-69 years, female 8.9
GTEX-X4EO-2426-SM-4QASD 60-69 years, female 8.7
GTEX-T5JW-0426-SM-4DM7M 20-29 years, female 8.5
GTEX-ZC5H-2026-SM-5CVN2 40-49 years, female 8.4
GTEX-12WSB-2226-SM-5GCOS 60-69 years, female 8.3
GTEX-13QBU-1526-SM-5LU3W 40-49 years, female 8.1
GTEX-QCQG-1426-SM-48U22 50-59 years, female 8.0
GTEX-X15G-1726-SM-4PQZN 50-59 years, female 8.0
GTEX-XUZC-1026-SM-4BOPY 30-39 years, female 7.9
GTEX-13X6H-1026-SM-5SIBE 50-59 years, female 7.8
GTEX-WWYW-2726-SM-4MVOP 50-59 years, female 7.8
GTEX-13OVI-0726-SM-5L3DD 60-69 years, female 7.7
GTEX-13PVR-1226-SM-5RQJ2 60-69 years, female 7.7
GTEX-PLZ4-2826-SM-3P617 50-59 years, female 7.6
GTEX-13OVJ-2426-SM-5KM3I 50-59 years, female 7.5
GTEX-T6MO-1126-SM-4DM5D 40-49 years, female 7.4
GTEX-13D11-1126-SM-5KLYS 50-59 years, female 7.1
GTEX-WI4N-2526-SM-4OOSE 40-49 years, female 6.9
GTEX-OHPL-2426-SM-48TDN 60-69 years, female 5.1
Show all

OVARY - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

37.0

FANTOM5 sample id

Sample description

Tags Per Million

Ovary
Tags Per Million: 37.0
FF:10020-101D2 47,75,84 years, female 37.0

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The Human Protein Atlas project is funded
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