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ABCA1
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TISSUE ATLAS PRIMARY DATA OVARY

GENE/PROTEIN

Antibody validation


Dictionary

Ovary

Tissue proteome

Ovary

OVARY - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:10.8TPM
GTEx:5.7RPKM
FANTOM5:35.7Tags Per Million

OVARY - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Follicle cells:Medium
Ovarian stroma cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody CAB069889

 

Follicle cells

Medium  

Ovarian stroma cells

Low  
 
 
 

OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

10.8

overview Female, age 64 Sample 1
TPM: 12
Cell types%
Stromal cells: 70
Smooth muscle cells: 15
Other cell types: 15
overview Female, age 52 Sample 2
TPM: 11.1
Cell types%
Stromal cells: 95
Other cell types: 5
overview Female, age 80 Sample 3
TPM: 9.4
Cell types%
Stromal cells: 70
Smooth muscle cells: 25
Other cell types: 5

OVARY - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

5.7

GTEx sample id

Sample description

RPKM

Ovary
RPKM: 5.7
Samples: 97

Max RPKM: 16.7
Min RPKM: 0.1
Std RPKM: 3.3
Median RPKM: 5.2
GTEX-11EM3-1726-SM-5N9D1 20-29 years, female 16.7
GTEX-U3ZN-1026-SM-4DXTC 30-39 years, female 16.7
GTEX-13N11-0526-SM-5IJFI 50-59 years, female 16.6
GTEX-Q734-0726-SM-48TZP 40-49 years, female 13.0
GTEX-13FTX-0926-SM-5IFF7 20-29 years, female 12.4
GTEX-13PL7-2326-SM-5L3FY 60-69 years, female 11.5
GTEX-WWYW-2726-SM-4MVOP 50-59 years, female 11.4
GTEX-ZAJG-2726-SM-5S2MU 50-59 years, female 11.1
GTEX-ZZPU-2126-SM-5EGIU 50-59 years, female 10.4
GTEX-WI4N-2526-SM-4OOSE 40-49 years, female 10.0
GTEX-132AR-1426-SM-5IFF1 50-59 years, female 9.6
GTEX-12WSK-1926-SM-5LZVK 40-49 years, female 9.4
GTEX-ZVT2-0326-SM-5E44G 50-59 years, female 9.3
GTEX-RTLS-2326-SM-46MUH 60-69 years, female 9.0
GTEX-S7SF-1326-SM-4AD4P 20-29 years, female 8.7
GTEX-13U4I-2126-SM-5LU55 40-49 years, female 8.3
GTEX-ZYY3-2726-SM-5EGH4 60-69 years, female 8.2
GTEX-POMQ-1426-SM-3P61D 20-29 years, female 8.0
GTEX-T2IS-2026-SM-4DM6W 20-29 years, female 8.0
GTEX-13OVI-0726-SM-5L3DD 60-69 years, female 7.9
GTEX-TSE9-2226-SM-4DXUR 60-69 years, female 7.8
GTEX-12WSB-2226-SM-5GCOS 60-69 years, female 7.6
GTEX-13X6H-1026-SM-5SIBE 50-59 years, female 7.5
GTEX-YFC4-2726-SM-5IFJW 40-49 years, female 7.5
GTEX-OHPK-2426-SM-3MJGH 50-59 years, female 7.4
GTEX-RU1J-0826-SM-46MUU 20-29 years, female 7.2
GTEX-TMMY-1726-SM-4DXTD 40-49 years, female 7.1
GTEX-ZYWO-1926-SM-5E456 40-49 years, female 7.0
GTEX-S4P3-0926-SM-4AD54 50-59 years, female 6.9
GTEX-RU72-2226-SM-46MUE 50-59 years, female 6.8
GTEX-PWCY-1326-SM-48TCU 20-29 years, female 6.7
GTEX-PX3G-2426-SM-48TZZ 20-29 years, female 6.7
GTEX-S32W-1226-SM-4AD67 50-59 years, female 6.6
GTEX-14AS3-1326-SM-5RQJE 40-49 years, female 6.5
GTEX-1399S-2126-SM-5J2MH 30-39 years, female 6.3
GTEX-11P81-1526-SM-5P9GS 30-39 years, female 6.1
GTEX-PWN1-2426-SM-48TDD 40-49 years, female 6.1
GTEX-YJ8O-1026-SM-5CVM5 40-49 years, female 6.0
GTEX-11GSP-0226-SM-5A5KV 60-69 years, female 5.9
GTEX-11VI4-1026-SM-5EQM1 40-49 years, female 5.9
GTEX-ZLWG-0926-SM-4WWC3 50-59 years, female 5.9
GTEX-11ZTS-1926-SM-5CVLA 60-69 years, female 5.8
GTEX-11XUK-1626-SM-5GU5O 40-49 years, female 5.6
GTEX-P78B-1926-SM-3P616 40-49 years, female 5.6
GTEX-XV7Q-1426-SM-4BRWA 40-49 years, female 5.6
GTEX-S341-0726-SM-4AD5R 40-49 years, female 5.5
GTEX-11EMC-1726-SM-5H11P 60-69 years, female 5.2
GTEX-11ZVC-1426-SM-5EGGA 50-59 years, female 5.2
GTEX-139D8-2426-SM-5KM3A 30-39 years, female 5.2
GTEX-ZC5H-2026-SM-5CVN2 40-49 years, female 5.2
GTEX-UJHI-1226-SM-4IHLR 50-59 years, female 5.1
GTEX-ZPIC-1426-SM-4WWCP 40-49 years, female 4.9
GTEX-13OVJ-2426-SM-5KM3I 50-59 years, female 4.8
GTEX-XUW1-0126-SM-4BOOQ 50-59 years, female 4.8
GTEX-1313W-2726-SM-5P9IX 50-59 years, female 4.6
GTEX-QVJO-3126-SM-4R1KC 60-69 years, female 4.6
GTEX-ZP4G-0626-SM-4WWF1 20-29 years, female 4.6
GTEX-11I78-1926-SM-59878 50-59 years, female 4.5
GTEX-13PVR-1226-SM-5RQJ2 60-69 years, female 4.5
GTEX-P4QT-2426-SM-3NMCL 50-59 years, female 4.4
GTEX-P4PP-2426-SM-3P61L 30-39 years, female 4.2
GTEX-ZYFG-1726-SM-5GZZB 60-69 years, female 4.2
GTEX-XUJ4-1326-SM-4BOQ9 60-69 years, female 4.1
GTEX-Y3IK-2026-SM-4YCDG 50-59 years, female 4.0
GTEX-133LE-1226-SM-5IFGC 20-29 years, female 3.9
GTEX-W5WG-0926-SM-4RTX9 50-59 years, female 3.9
GTEX-Y114-1726-SM-4TT7U 50-59 years, female 3.9
GTEX-1269C-1826-SM-5N9E1 60-69 years, female 3.7
GTEX-12WSG-1426-SM-5FQUK 50-59 years, female 3.7
GTEX-13QBU-1526-SM-5LU3W 40-49 years, female 3.7
GTEX-X8HC-2726-SM-46MUA 50-59 years, female 3.7
GTEX-T6MO-1126-SM-4DM5D 40-49 years, female 3.6
GTEX-TML8-0926-SM-4DXSJ 40-49 years, female 3.6
GTEX-13VXT-1526-SM-5LU3J 20-29 years, female 3.4
GTEX-13W3W-1526-SM-5LU5I 60-69 years, female 3.3
GTEX-ZVT3-2626-SM-5GU5L 60-69 years, female 3.2
GTEX-12ZZX-2026-SM-5LZV9 40-49 years, female 3.0
GTEX-131YS-2226-SM-5P9G8 60-69 years, female 3.0
GTEX-X4EO-2426-SM-4QASD 60-69 years, female 3.0
GTEX-145ME-1226-SM-5SIB6 40-49 years, female 2.9
GTEX-PLZ4-2826-SM-3P617 50-59 years, female 2.8
GTEX-13QIC-1526-SM-5IJFL 60-69 years, female 2.7
GTEX-XUZC-1026-SM-4BOPY 30-39 years, female 2.7
GTEX-13D11-1126-SM-5KLYS 50-59 years, female 2.5
GTEX-11DXX-1426-SM-5GIDU 60-69 years, female 2.4
GTEX-RWS6-1026-SM-47JXD 60-69 years, female 2.3
GTEX-12WSD-2726-SM-59HLR 60-69 years, female 2.1
GTEX-11ZTT-1826-SM-5CVLN 60-69 years, female 2.0
GTEX-T5JW-0426-SM-4DM7M 20-29 years, female 2.0
GTEX-XMD3-2326-SM-4AT5H 50-59 years, female 1.9
GTEX-146FH-2526-SM-5Q5BP 50-59 years, female 1.8
GTEX-12WSJ-1226-SM-5LU91 40-49 years, female 1.3
GTEX-QCQG-1426-SM-48U22 50-59 years, female 1.3
GTEX-13O3O-2726-SM-5KM35 60-69 years, female 0.7
GTEX-X15G-1726-SM-4PQZN 50-59 years, female 0.7
GTEX-XYKS-1726-SM-4E3IO 60-69 years, female 0.3
GTEX-OHPL-2426-SM-48TDN 60-69 years, female 0.1
Show all

OVARY - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

35.7

FANTOM5 sample id

Sample description

Tags Per Million

Ovary
Tags Per Million: 35.7
FF:10020-101D2 47,75,84 years, female 35.7

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The Human Protein Atlas project is funded
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