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AFF1
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TISSUE ATLAS SMALL INTESTINE

GENE/PROTEIN

Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:21.7TPM
GTEx:14.0RPKM
FANTOM5:149.5Tags Per Million

SMALL INTESTINE - Annotated protein expression

Pending normal tissue analysis


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

21.7

overview Male, age 65 Sample 1
TPM: 22.5
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39 Sample 2
TPM: 24.1
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68 Sample 3
TPM: 19.9
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85 Sample 4
TPM: 20.5

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

14.0

GTEx sample id

Sample description

RPKM

Small Intestine - Terminal Ileum
RPKM: 14.0
Samples: 88

Max RPKM: 23.7
Min RPKM: 7.8
Std RPKM: 3.1
Median RPKM: 13.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 23.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 23.6
GTEX-117YX-0326-SM-5GICL 50-59 years, male 20.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 20.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 19.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 19.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 19.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 18.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 18.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 18.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 17.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 17.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 17.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 17.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 16.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 16.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 16.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 16.5
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 16.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 16.1
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 16.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 16.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 15.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 15.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 15.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 15.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 15.1
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 15.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 15.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 14.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 14.8
GTEX-1192X-2526-SM-59868 50-59 years, male 14.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 14.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 14.6
GTEX-ZYWO-1526-SM-5SIAL 40-49 years, female 14.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 14.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 14.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 14.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 14.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 14.2
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 14.1
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 13.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 13.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 13.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 13.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 13.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 13.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 13.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 13.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 13.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 13.3
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 13.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 13.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 13.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 13.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 12.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 12.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 12.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 12.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 12.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 12.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 12.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 12.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 12.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 11.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 11.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 11.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 11.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 11.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 11.3
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 11.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 11.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 11.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 11.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 11.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 11.0
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 11.0
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 10.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 10.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 10.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 9.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 9.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 9.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 9.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 8.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 8.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 8.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 7.8
Show all

SMALL INTESTINE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

149.5

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 149.5
FF:10024-101D6 15,40,85 years, mixed 149.5

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