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Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival, using best separation (to the left) and median separation (to the right). Patients were divided based on level of expression into one of the two groups "low" or "high". Below each Kaplan-Meier plot, corresponding expression cutoff, 5-year survival for patients with high expression, 5-year survival for patients with low expression and log-rank P value are displayed. For melanoma and glioma, 3-year survival is shown. The survival analysis is described in Assays & Annotation.
The tabs at the top of the survival analysis section can be used to switch between the different cancer subtypes.
Best separation
Median separation
Expression cutoffi
5-year survival for patients with higher expression than the expression cutoff.
174.5 FPKM
132.4 FPKM
3-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
0%
35%
3-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
52%
22%
Log-rank P valuei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
The Scatter Survival plot shows the clinical status for all individuals in the patient cohort, based on the same data as in the Kaplan-Meier plots. Living patients are shown in blue and deceased patients in red. The x-axis shows the expression levels (FPKM) of the investigated gene at the time of diagnosis and the y-axis shows the number of years of survival (living years) after the diagnosis.
Individual patient data is displayed in an interactive plot and can be filtered by clicking on one or several category buttons to the left. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be changed to "x linear" by clicking on the "x log" button on the left. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
Stage:
TCGA RNA samplesi
RNA-seq data is reported as median FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average FPKM
244.3
Number of samples
102
Samples
Sample
Description
FPKM
TCGA-BF-A3DJ-01A
36 years, female, white, stage:iiib
2810.6
TCGA-EB-A42Z-01A
49 years, male, asian, stage:iiic
1226.3
TCGA-ER-A2NF-01A
53 years, male, white, stage:iiib
1099.1
TCGA-D9-A4Z5-01A
68 years, male, white, stage:iib
1093.6
TCGA-EB-A551-01A
78 years, female, white, stage:iiic
1068.8
TCGA-EB-A3XB-01A
63 years, male, white, stage:ii
1031.8
TCGA-IH-A3EA-01A
61 years, male, white, stage:iic
1000.2
TCGA-GN-A263-01A
24 years, male, white, stage:iv
754.9
TCGA-BF-AAOX-01A
83 years, male, white, stage:iic
715.1
TCGA-EB-A3HV-01A
37 years, male, white, stage:iic
538.7
TCGA-EB-A4XL-01A
56 years, female, white, stage:iic
510.7
TCGA-ER-A19T-01A
51 years, male, white, stage:iv
450.0
TCGA-GN-A8LN-01A
68 years, male, white, stage:iic
446.1
TCGA-D9-A3Z4-01A
54 years, male, white, stage:iiic
404.4
TCGA-XV-A9W5-01A
51 years, male, white, stage:i/ii nos
383.7
TCGA-FW-A5DX-01A
71 years, male, white, stage:iiic
380.9
TCGA-BF-A5EO-01A
65 years, male, white, stage:iic
373.4
TCGA-FR-A2OS-01A
49 years, female, white, stage:iic
347.1
TCGA-EB-A41A-01A
90 years, male, white, stage:iic
345.1
TCGA-BF-A5EQ-01A
63 years, male, white, stage:iic
312.4
TCGA-EB-A82B-01A
58 years, female, asian, stage:iii
311.6
TCGA-FR-A726-01A
90 years, male, white, stage:iic
310.3
TCGA-ER-A42H-01A
77 years, male, white
292.0
TCGA-BF-AAOU-01A
73 years, female, white, stage:iic
283.0
TCGA-EB-A3XF-01A
57 years, male, white, stage:iic
282.2
TCGA-EB-A51B-01A
53 years, male, white, stage:iic
255.4
TCGA-EB-A1NK-01A
48 years, male, white, stage:iic
245.8
TCGA-EB-A431-01A
34 years, male, white, stage:iic
245.3
TCGA-EB-A97M-01A
66 years, male, white, stage:iic
242.2
TCGA-EB-A85I-01A
66 years, male, white, stage:iic
234.2
TCGA-BF-AAP8-01A
58 years, male, white, stage:iic
230.1
TCGA-D9-A4Z2-01A
50 years, male, white, stage:iiic
226.7
TCGA-BF-A1PX-01A
56 years, male, white, stage:iiib
219.8
TCGA-EB-A3Y6-01A
56 years, female, white, stage:iic
216.7
TCGA-EB-A57M-01A
56 years, male, asian, stage:iiib
216.2
TCGA-GF-A769-01A
39 years, male, white, stage:iic
214.9
TCGA-GF-A2C7-01A
48 years, male, white, stage:iic
205.0
TCGA-EB-A44P-01A
58 years, female, white, stage:iic
199.3
TCGA-FS-A1ZN-01A
43 years, male, white, stage:iiia
194.3
TCGA-EB-A4IS-01A
77 years, male, white, stage:iib
181.5
TCGA-EB-A6QZ-01A
76 years, female, white, stage:iia
178.5
TCGA-EB-A299-01A
63 years, male, white, stage:iia
178.0
TCGA-EB-A5VU-01A
56 years, male, asian, stage:iiib
175.4
TCGA-D3-A5GT-01A
43 years, male, white, stage:iiic
173.6
TCGA-GN-A4U5-01A
61 years, female, white, stage:ib
169.4
TCGA-EB-A3XC-01A
74 years, male, white, stage:iic
152.9
TCGA-XV-A9W2-01A
81 years, male, white, stage:i
149.7
TCGA-EB-A3XD-01A
53 years, female, white, stage:iic
143.3
TCGA-EB-A550-01A
75 years, female, white, stage:iic
142.9
TCGA-BF-AAP6-01A
55 years, male, white, stage:iii
136.6
TCGA-BF-AAP4-01A
61 years, male, white, stage:iic
132.9
TCGA-EB-A3XE-01A
77 years, female, white, stage:iia
132.0
TCGA-BF-A5ES-01A
76 years, female, white, stage:iic
129.7
TCGA-XV-AAZV-01A
56 years, female, white, stage:ii
120.9
TCGA-XV-AAZY-01A
76 years, female, white, stage:iiic
114.1
TCGA-EB-A44N-01A
59 years, male, white, stage:iic
112.0
TCGA-ER-A196-01A
64 years, female, white, stage:iic
110.1
TCGA-BF-A3DN-01A
81 years, female, white, stage:iiic
106.1
TCGA-EB-A5FP-01A
65 years, female, white, stage:iv
105.9
TCGA-FR-A3R1-01A
69 years, male, white, stage:iic
102.9
TCGA-EB-A44O-01A
69 years, male, white, stage:iib
101.9
TCGA-EB-A85J-01A
66 years, female, white, stage:iib
98.7
TCGA-BF-AAP7-01A
76 years, female, white, stage:iic
96.1
TCGA-ER-A19K-01A
79 years, female, white, stage:iic
94.0
TCGA-BF-A5ER-01A
63 years, male, white, stage:iic
91.3
TCGA-BF-AAP2-01A
62 years, male, white, stage:iib
85.7
TCGA-GN-A26C-01A
77 years, male, white, stage:iiic
75.6
TCGA-FR-A728-01A
54 years, female, white, stage:iiib
66.6
TCGA-YG-AA3N-01A
67 years, male, stage:iic
66.5
TCGA-EB-A4OY-01A
65 years, female, white, stage:iiib
63.6
TCGA-EB-A5SE-01A
73 years, male, white, stage:iib
61.0
TCGA-WE-A8K4-01A
85 years, male, white, stage:iib
60.2
TCGA-D9-A4Z3-01A
73 years, female, white, stage:iiic
57.6
TCGA-HR-A5NC-01A
90 years, female
53.1
TCGA-BF-A5EP-01A
75 years, female, white, stage:iiic
52.9
TCGA-EB-A42Y-01A
73 years, female, asian, stage:iic
52.9
TCGA-BF-A3DL-01A
84 years, female, white, stage:iiib
49.7
TCGA-BF-A1Q0-01A
80 years, male, white, stage:iic
48.6
TCGA-BF-A1PU-01A
46 years, female, white, stage:iic
48.1
TCGA-ER-A194-01A
77 years, male, white
48.1
TCGA-EB-A41B-01A
76 years, female, white, stage:iic
45.6
TCGA-BF-A9VF-01A
77 years, male, white, stage:iic
43.5
TCGA-EB-A4OZ-01A
42 years, female, white, stage:iiic
43.2
TCGA-EB-A24C-01A
56 years, male, white
42.5
TCGA-EB-A6QY-01A
71 years, male, white, stage:iic
42.2
TCGA-BF-A3DM-01A
63 years, male, white, stage:iia
35.9
TCGA-EB-A5SF-01A
78 years, female, white, stage:iic
35.5
TCGA-EB-A4IQ-01A
42 years, female, asian, stage:iiib
35.0
TCGA-EB-A3Y7-01A
86 years, female, white, stage:iiib
33.6
TCGA-EB-A4P0-01A
82 years, male, white, stage:iic
33.5
TCGA-XV-A9VZ-01A
90 years, female, white, stage:ii
31.8
TCGA-BF-AAP1-01A
86 years, male, white, stage:iic
31.5
TCGA-XV-AAZW-01A
62 years, female, white, stage:ii
30.9
TCGA-EB-A5UM-01A
48 years, female, white, stage:iic
27.1
TCGA-EB-A553-01A
62 years, male, white, stage:iic
26.8
TCGA-ER-A2NB-01A
57 years, male, white, stage:iiib
25.5
TCGA-BF-A1PZ-01A
71 years, female, white, stage:iib
24.4
TCGA-EB-A6R0-01A
58 years, female, white, stage:iic
23.8
TCGA-EB-A24D-01A
72 years, male, white, stage:iiib
23.2
TCGA-DA-A960-01A
73 years, male, white, stage:iib
18.2
TCGA-BF-A1PV-01A
74 years, female, white, stage:iic
15.7
TCGA-EB-A82C-01A
70 years, female, asian, stage:iic
12.4
Show all
MELANOMA - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.