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TISSUE ATLAS PRIMARY DATA BREAST

GENE/PROTEIN

Antibody validation


Dictionary

Breast

BREAST - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:190.4TPM
GTEx:230.7RPKM
FANTOM5:200.1Tags Per Million

BREAST - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Adipocytes:Not detected
Glandular cells:Not detected
Myoepithelial cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA002265

 

Antibody CAB017621

 

Adipocytes

Not detected   Not detected  

Glandular cells

Not detected   Not detected  

Myoepithelial cells

Not detected   Not detected  
   
   
   

BREAST - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

190.4

overview Female, age 52 Sample 1
TPM: 186.9
Cell types%
Glandular cells: 15
Adipocytes: 5
Other cell types: 80
overview Female, age 80 Sample 2
TPM: 211.7
Cell types%
Glandular cells: 5
Adipocytes: 15
Other cell types: 80
overview Female, age 47 Sample 3
TPM: 123.3
Cell types%
Glandular cells: 5
Adipocytes: 5
Other cell types: 90
overview Female, age 38 Sample 4
TPM: 239.9
Cell types%
Glandular cells: 40
Adipocytes: 5
Other cell types: 55

BREAST - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

230.7

GTEx sample id

Sample description

RPKM

Breast - Mammary Tissue
RPKM: 230.7
Samples: 214

Max RPKM: 579.6
Min RPKM: 71.4
Std RPKM: 88.0
Median RPKM: 217.7
GTEX-11O72-2126-SM-5N9FO 40-49 years, male 579.6
GTEX-12WSB-0626-SM-59HJO 60-69 years, female 533.4
GTEX-11NV4-2026-SM-5N9DG 60-69 years, male 473.4
GTEX-WOFL-0826-SM-3MJG1 60-69 years, male 465.8
GTEX-ZF3C-2326-SM-5S2MZ 50-59 years, female 462.5
GTEX-11OF3-1926-SM-59889 60-69 years, male 461.1
GTEX-WFON-1826-SM-3GILG 40-49 years, male 452.9
GTEX-12WSM-1726-SM-5BC6J 60-69 years, male 434.6
GTEX-T2YK-2226-SM-32QPT 50-59 years, male 424.1
GTEX-11DXY-2326-SM-5GICW 60-69 years, male 418.9
GTEX-13OW8-0226-SM-5K7UP 60-69 years, male 399.7
GTEX-ZYT6-0126-SM-5E45J 30-39 years, male 388.7
GTEX-117XS-1926-SM-5GICO 60-69 years, male 370.1
GTEX-1211K-1926-SM-5EQLB 60-69 years, female 363.9
GTEX-YJ8O-2226-SM-5IFHW 40-49 years, female 363.4
GTEX-1117F-2826-SM-5GZXL 60-69 years, female 360.2
GTEX-145MO-0826-SM-5NQBL 60-69 years, male 355.3
GTEX-13QIC-2326-SM-5LU5N 60-69 years, female 354.1
GTEX-146FH-0826-SM-5SI8T 50-59 years, female 351.3
GTEX-S33H-0326-SM-4AD6N 30-39 years, male 350.8
GTEX-13W46-0826-SM-5LU3H 50-59 years, male 350.0
GTEX-XV7Q-2326-SM-4BRVZ 40-49 years, female 349.6
GTEX-ZYFC-0826-SM-5E44K 50-59 years, male 348.7
GTEX-ZUA1-1526-SM-59HLS 40-49 years, male 346.4
GTEX-11GSO-1926-SM-5A5K3 60-69 years, male 341.3
GTEX-QVJO-1826-SM-447C9 60-69 years, female 339.5
GTEX-TKQ2-1826-SM-33HB2 50-59 years, male 336.2
GTEX-13113-1726-SM-5GCOO 60-69 years, female 331.4
GTEX-11ZUS-0826-SM-5FQUY 30-39 years, male 329.1
GTEX-1314G-1226-SM-5BC6D 30-39 years, male 328.4
GTEX-ZVZQ-0826-SM-51MRF 60-69 years, female 328.4
GTEX-S4Q7-1126-SM-4AD6R 20-29 years, male 327.2
GTEX-11DXW-0626-SM-5N9ER 40-49 years, male 325.5
GTEX-11EI6-0626-SM-5985T 60-69 years, male 323.8
GTEX-ZVT4-1026-SM-57WC4 50-59 years, female 323.4
GTEX-13O3Q-2226-SM-5KM4O 50-59 years, male 322.4
GTEX-S7SE-0826-SM-4AT4D 50-59 years, male 321.6
GTEX-14753-2426-SM-5LU8U 60-69 years, male 320.4
GTEX-132AR-0826-SM-5EGK6 50-59 years, female 317.9
GTEX-WI4N-1426-SM-3LK7H 40-49 years, female 304.5
GTEX-ZYW4-0826-SM-5GIDG 60-69 years, male 302.1
GTEX-13OW5-2226-SM-5L3HC 60-69 years, male 298.2
GTEX-Y9LG-1426-SM-5IFJZ 30-39 years, male 295.0
GTEX-11WQK-2426-SM-5GU5C 50-59 years, male 294.1
GTEX-YB5E-1726-SM-5IFJ3 40-49 years, male 293.9
GTEX-X261-0626-SM-3NMD9 50-59 years, male 292.3
GTEX-13PL6-2926-SM-5L3I2 40-49 years, female 285.3
GTEX-13NZ8-0126-SM-5IJCT 60-69 years, female 275.6
GTEX-ZQG8-0726-SM-5P9H9 60-69 years, female 274.9
GTEX-13S86-1226-SM-5S2OA 40-49 years, male 274.8
GTEX-12KS4-0126-SM-5Q5A5 30-39 years, male 271.4
GTEX-144GM-0926-SM-5O994 20-29 years, male 271.1
GTEX-RU72-0626-SM-46MUI 50-59 years, female 270.1
GTEX-YEC3-1026-SM-5IFI5 50-59 years, male 269.2
GTEX-ZYWO-2326-SM-5GZY4 40-49 years, female 268.4
GTEX-Q2AG-0326-SM-48U1O 40-49 years, female 267.9
GTEX-13FTX-1126-SM-5N9EN 20-29 years, female 267.7
GTEX-ZDTT-2126-SM-5S2OJ 60-69 years, male 266.2
GTEX-ZZ64-1226-SM-5E43R 20-29 years, male 265.1
GTEX-ZWKS-2826-SM-5NQ74 30-39 years, male 262.9
GTEX-PSDG-1626-SM-48TCQ 50-59 years, male 262.1
GTEX-UPK5-2326-SM-3P5Z8 40-49 years, male 261.5
GTEX-S32W-2026-SM-4AD6E 50-59 years, female 260.4
GTEX-TML8-1226-SM-32QON 40-49 years, female 260.2
GTEX-12WSN-1326-SM-5GCNT 40-49 years, male 258.9
GTEX-X15G-1626-SM-3NMB3 50-59 years, female 257.1
GTEX-11LCK-2426-SM-5HL5F 30-39 years, male 255.1
GTEX-WRHU-0326-SM-3MJFY 50-59 years, female 255.1
GTEX-12WSK-2226-SM-5GCO5 40-49 years, female 254.7
GTEX-13W3W-1226-SM-5LU4H 60-69 years, female 253.0
GTEX-R53T-1526-SM-48FEK 50-59 years, female 252.5
GTEX-11ONC-2126-SM-5HL6E 60-69 years, male 250.7
GTEX-139T6-1626-SM-5PNYZ 50-59 years, male 249.1
GTEX-ZT9W-2026-SM-51MRA 50-59 years, male 248.4
GTEX-11P81-1926-SM-5BC53 30-39 years, female 247.8
GTEX-1269C-2426-SM-5FQSN 60-69 years, female 244.9
GTEX-145ME-1526-SM-5Q5F2 40-49 years, female 243.0
GTEX-Y111-2026-SM-4SOJA 50-59 years, male 242.9
GTEX-1192X-2326-SM-5987X 50-59 years, male 240.9
GTEX-144GL-2026-SM-5LU3O 50-59 years, male 240.8
GTEX-Y3I4-1526-SM-4TT7K 50-59 years, male 239.2
GTEX-YFCO-1826-SM-4W1YH 40-49 years, male 239.0
GTEX-Y5V6-2126-SM-4WWFX 60-69 years, male 238.7
GTEX-Y3IK-2326-SM-4WWDT 50-59 years, female 238.1
GTEX-117YX-1426-SM-5H12H 50-59 years, male 237.9
GTEX-11DZ1-0326-SM-5N9BN 50-59 years, male 237.9
GTEX-XQ8I-2426-SM-4WAXY 50-59 years, male 237.6
GTEX-XUW1-2326-SM-4BOO5 50-59 years, female 237.5
GTEX-1313W-0826-SM-5EQ4T 50-59 years, female 234.2
GTEX-U3ZH-1426-SM-4DXSR 30-39 years, male 233.9
GTEX-XUJ4-1926-SM-4BOOV 60-69 years, female 233.0
GTEX-QMRM-1626-SM-4R1KV 50-59 years, male 232.5
GTEX-W5X1-2326-SM-3GIL6 40-49 years, female 232.5
GTEX-145MN-1926-SM-5SIAI 30-39 years, male 231.6
GTEX-ZDYS-1126-SM-5K7UB 50-59 years, male 231.1
GTEX-X4EP-2926-SM-3P5YQ 60-69 years, female 230.1
GTEX-RUSQ-2026-SM-4GIAK 50-59 years, male 229.5
GTEX-13N11-1726-SM-5J1OJ 50-59 years, female 228.9
GTEX-ZC5H-2626-SM-5J2MG 40-49 years, female 227.0
GTEX-11NSD-0926-SM-5N9DR 20-29 years, male 225.4
GTEX-13O3P-0826-SM-5L3DH 50-59 years, male 223.9
GTEX-139TU-0626-SM-5KM3X 60-69 years, male 222.8
GTEX-Y8E4-1626-SM-5S2MW 40-49 years, male 222.6
GTEX-RWS6-1926-SM-47JXY 60-69 years, female 222.3
GTEX-R55D-0826-SM-48FEA 50-59 years, male 219.3
GTEX-11WQC-1726-SM-5GU4W 60-69 years, male 218.9
GTEX-ZV6S-1826-SM-5NQ8D 40-49 years, female 218.5
GTEX-132NY-0826-SM-5K7Y7 60-69 years, male 216.8
GTEX-ZTTD-1026-SM-51MRD 50-59 years, male 212.6
GTEX-ZTX8-1226-SM-4YCE9 20-29 years, male 211.9
GTEX-QDT8-0626-SM-48TYW 30-39 years, female 211.2
GTEX-Y8LW-1626-SM-5IFHX 50-59 years, female 211.0
GTEX-13O61-1826-SM-5KM4I 60-69 years, male 207.7
GTEX-14E6E-1326-SM-5S2NR 30-39 years, male 207.5
GTEX-S4UY-0726-SM-4AD6X 40-49 years, female 206.1
GTEX-YB5K-1626-SM-5IFIN 40-49 years, female 204.3
GTEX-ZF29-1926-SM-5S2P1 60-69 years, female 204.3
GTEX-13CF2-2026-SM-5K7VI 60-69 years, male 203.8
GTEX-VJWN-0726-SM-3GIJ8 50-59 years, female 202.7
GTEX-R55F-1726-SM-2TF4R 50-59 years, male 202.4
GTEX-11EQ9-1826-SM-5Q5AJ 30-39 years, male 201.9
GTEX-Y5LM-1726-SM-4VDSX 40-49 years, female 201.1
GTEX-ZY6K-1626-SM-5GZWV 50-59 years, male 200.8
GTEX-XGQ4-0926-SM-4AT4U 50-59 years, male 200.4
GTEX-WYBS-0926-SM-3NM94 60-69 years, female 200.3
GTEX-11DXZ-1926-SM-5GZZL 50-59 years, male 199.7
GTEX-ZA64-1526-SM-5CVMD 20-29 years, male 199.3
GTEX-XMD2-0926-SM-4WWEF 60-69 years, female 197.5
GTEX-XMK1-1126-SM-4IHJ8 40-49 years, male 197.4
GTEX-R3RS-0626-SM-48FE1 40-49 years, female 197.3
GTEX-13FTW-1426-SM-5LZWZ 40-49 years, male 196.7
GTEX-11GS4-2126-SM-5A5KR 60-69 years, male 195.8
GTEX-ZF2S-2026-SM-5E461 50-59 years, female 195.8
GTEX-T6MO-0326-SM-32QOK 40-49 years, female 195.0
GTEX-ZLV1-1426-SM-4WWES 60-69 years, female 194.9
GTEX-1399U-1826-SM-5PNZ1 50-59 years, female 193.5
GTEX-ZVE2-1226-SM-5NQ8R 50-59 years, male 193.2
GTEX-13NZ9-1026-SM-5MR5K 50-59 years, male 192.8
GTEX-XQ3S-1326-SM-4BOPQ 20-29 years, male 191.9
GTEX-13FHO-0826-SM-5L3E8 60-69 years, male 191.5
GTEX-11ZTT-2326-SM-5EQLG 60-69 years, female 190.4
GTEX-QEG5-0726-SM-4R1JQ 20-29 years, male 190.1
GTEX-YFC4-1426-SM-5IFJG 40-49 years, female 190.0
GTEX-ZZPU-0626-SM-5E43T 50-59 years, female 187.9
GTEX-QEL4-2126-SM-447AE 50-59 years, male 187.3
GTEX-WYJK-1326-SM-3NB2T 50-59 years, male 187.3
GTEX-XMD1-0826-SM-4AT52 60-69 years, male 186.5
GTEX-13O3O-0826-SM-5K7WE 60-69 years, female 184.5
GTEX-ZLFU-2126-SM-4WWEV 40-49 years, male 183.7
GTEX-133LE-1726-SM-5K7VQ 20-29 years, female 182.3
GTEX-147F4-2826-SM-5NQBN 50-59 years, male 180.1
GTEX-UJHI-1426-SM-3DB9C 50-59 years, female 179.7
GTEX-ZAB4-2526-SM-5HL8M 40-49 years, male 178.3
GTEX-ZDXO-0126-SM-5S2ND 60-69 years, male 177.1
GTEX-UTHO-1026-SM-3GAF7 60-69 years, male 176.9
GTEX-12BJ1-1826-SM-5HL9N 60-69 years, male 176.4
GTEX-1122O-1226-SM-5H113 60-69 years, female 175.9
GTEX-SIU7-1626-SM-4BRUK 50-59 years, male 174.2
GTEX-12ZZX-1126-SM-5EGKB 40-49 years, female 171.5
GTEX-U8XE-0826-SM-4E3J1 30-39 years, male 167.8
GTEX-ZAJG-0626-SM-5HL8X 50-59 years, female 167.6
GTEX-11PRG-0826-SM-5EQ6A 50-59 years, male 165.5
GTEX-VUSG-2226-SM-4KKZO 50-59 years, male 165.3
GTEX-111YS-1926-SM-5GICC 60-69 years, male 164.6
GTEX-WY7C-2726-SM-3NB3P 50-59 years, male 164.5
GTEX-XBED-1626-SM-47JYN 60-69 years, male 162.7
GTEX-TMMY-0726-SM-33HBE 40-49 years, female 161.2
GTEX-13CF3-2126-SM-5IFJP 60-69 years, female 160.7
GTEX-WXYG-2226-SM-4E3IM 50-59 years, female 160.2
GTEX-REY6-2426-SM-48FF5 60-69 years, male 160.0
GTEX-ZVT2-1826-SM-5NQ8W 50-59 years, female 159.5
GTEX-SE5C-2126-SM-4BRUJ 40-49 years, female 159.4
GTEX-13PVQ-1026-SM-5KM3M 50-59 years, male 158.5
GTEX-11TT1-2126-SM-5GU5Y 20-29 years, male 156.4
GTEX-13FTY-2226-SM-5J1ND 40-49 years, female 156.2
GTEX-11P82-1326-SM-5HL62 20-29 years, male 155.5
GTEX-131YS-0626-SM-5EGKL 60-69 years, female 155.4
GTEX-13N1W-0626-SM-5MR4U 70-79 years, male 154.2
GTEX-WYVS-1726-SM-3NMAY 40-49 years, female 152.5
GTEX-ZPIC-1126-SM-5BC7F 40-49 years, female 150.7
GTEX-Y5V5-2126-SM-4WWFO 60-69 years, female 150.1
GTEX-U3ZN-1926-SM-4DXSG 30-39 years, female 148.8
GTEX-11EMC-2026-SM-5A5JV 60-69 years, female 148.4
GTEX-X4XY-0926-SM-4E3JD 60-69 years, male 148.2
GTEX-ZEX8-2226-SM-57WC6 50-59 years, male 147.3
GTEX-ZXES-0826-SM-5E43C 30-39 years, female 144.3
GTEX-13D11-1026-SM-5IJFB 50-59 years, female 142.6
GTEX-14AS3-1626-SM-5S2OY 40-49 years, female 141.2
GTEX-13NZB-2126-SM-5MR4Y 30-39 years, male 140.2
GTEX-ZV7C-1826-SM-5NQ83 50-59 years, male 138.1
GTEX-145LT-0726-SM-5S2VM 40-49 years, male 136.7
GTEX-ZVTK-0326-SM-51MRR 20-29 years, male 135.7
GTEX-ZQUD-1926-SM-51MSA 30-39 years, male 133.3
GTEX-Y114-2026-SM-4TT7L 50-59 years, female 128.8
GTEX-T5JW-2026-SM-4DM63 20-29 years, female 128.1
GTEX-ZU9S-1926-SM-5NQBP 30-39 years, male 126.8
GTEX-T6MN-0726-SM-32PML 50-59 years, male 125.4
GTEX-139T8-0826-SM-5L3DE 60-69 years, male 122.1
GTEX-TKQ1-0226-SM-33HB5 30-39 years, male 120.9
GTEX-11TUW-1826-SM-5BC5D 60-69 years, male 120.6
GTEX-XYKS-1326-SM-4BRUN 60-69 years, female 119.6
GTEX-11EM3-1326-SM-5N9C6 20-29 years, female 113.0
GTEX-131XW-0726-SM-5EGK3 50-59 years, female 111.4
GTEX-XOT4-0726-SM-4GIAW 60-69 years, female 107.6
GTEX-S4P3-1326-SM-4AD6V 50-59 years, female 105.1
GTEX-S341-1526-SM-4AD6K 40-49 years, female 104.9
GTEX-T2IS-1526-SM-32QPR 20-29 years, female 101.9
GTEX-132Q8-1426-SM-5EGK7 60-69 years, male 98.0
GTEX-14ABY-2126-SM-5QGQZ 50-59 years, male 96.7
GTEX-11P7K-0726-SM-5EGKX 30-39 years, male 93.2
GTEX-T5JC-2126-SM-32PMO 20-29 years, male 86.3
GTEX-U412-1826-SM-4DXTJ 60-69 years, male 81.2
GTEX-XUZC-1626-SM-4BRVP 30-39 years, female 76.3
GTEX-11I78-2226-SM-5PNYA 50-59 years, female 71.4
Show all

BREAST - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

200.1

FANTOM5 sample id

Sample description

Tags Per Million

Breast
Tags Per Million: 200.1
FF:10080-102A8 77 years, female 200.1

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