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TISSUE ATLAS PRIMARY DATA PROSTATE

GENE/PROTEIN

Antibody validation


Dictionary

Prostate

Tissue proteome

Prostate

PROSTATE - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:418.5TPM
GTEx:242.0RPKM
FANTOM5:770.0Tags Per Million

PROSTATE - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA002265

 

Antibody CAB017621

 

Glandular cells

Medium   Not detected  
   
   
   

PROSTATE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

418.5

overview Male, age 62 Sample 1
TPM: 418.9
Cell types%
Glandular cells: 30
Smooth muscle cells: 55
Skeletal muscle cells: 5
Other cell types: 10
N/A Male, age 65 Sample 2
TPM: 312.1
Cell types%
Glandular cells: 20
Smooth muscle cells: 60
Other cell types: 20
overview Male, age 65 Sample 3
TPM: 253.3
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 68 Sample 4
TPM: 191
Cell types%
Glandular cells: 30
Smooth muscle cells: 65
Other cell types: 5
overview Male, age 60 Sample 5
TPM: 798.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 55
Other cell types: 5
overview Male, age 66 Sample 6
TPM: 220.5
Cell types%
Glandular cells: 50
Smooth muscle cells: 45
Other cell types: 5
overview Male, age 63 Sample 7
TPM: 782.5
Cell types%
Glandular cells: 60
Smooth muscle cells: 35
Other cell types: 5
overview Male, age 66 Sample 8
TPM: 116.6
Cell types%
Glandular cells: 65
Smooth muscle cells: 30
Other cell types: 5
overview Male, age 58 Sample 9
TPM: 1059.6
Cell types%
Glandular cells: 45
Smooth muscle cells: 50
Other cell types: 5

PROSTATE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

242.0

GTEx sample id

Sample description

RPKM

Prostate
RPKM: 242.0
Samples: 106

Max RPKM: 1254.7
Min RPKM: 18.2
Std RPKM: 207.0
Median RPKM: 177.8
GTEX-QLQ7-1326-SM-4R1JY 60-69 years, male 1254.7
GTEX-13RTJ-2126-SM-5S2PZ 60-69 years, male 894.7
GTEX-XAJ8-0626-SM-47JY4 40-49 years, male 772.2
GTEX-148VJ-1826-SM-5Q5DV 70-79 years, male 654.3
GTEX-NPJ8-2426-SM-3MJHL 40-49 years, male 636.8
GTEX-14E6E-1126-SM-5S2R4 30-39 years, male 627.2
GTEX-12ZZZ-2026-SM-5LZWJ 60-69 years, male 595.4
GTEX-13OW8-0426-SM-5J2NR 60-69 years, male 546.3
GTEX-111CU-1526-SM-5N9FS 50-59 years, male 545.7
GTEX-13G51-2326-SM-5LZXV 60-69 years, male 534.8
GTEX-UTHO-2726-SM-4JBH9 60-69 years, male 514.9
GTEX-13O21-1126-SM-5N9EV 50-59 years, male 507.5
GTEX-13O61-1726-SM-5KM46 60-69 years, male 503.3
GTEX-11OF3-1726-SM-5GU5Q 60-69 years, male 491.8
GTEX-XGQ4-1826-SM-4AT6F 50-59 years, male 483.5
GTEX-13N2G-1826-SM-5KM1I 60-69 years, male 477.9
GTEX-OOBK-2025-SM-3LK5S 40-49 years, male 468.7
GTEX-QV44-1526-SM-4R1KI 50-59 years, male 436.7
GTEX-1399T-1226-SM-5P9J5 60-69 years, male 432.8
GTEX-U8XE-2526-SM-4E3IT 30-39 years, male 419.7
GTEX-RM2N-1126-SM-48FCY 50-59 years, male 417.4
GTEX-YJ8A-1126-SM-5IFJU 20-29 years, male 402.2
GTEX-14C5O-2826-SM-5RQI6 60-69 years, male 394.6
GTEX-13111-1326-SM-5GCNO 50-59 years, male 388.0
GTEX-S33H-1826-SM-4AD65 30-39 years, male 381.3
GTEX-VJYA-1226-SM-3GIJ6 60-69 years, male 368.7
GTEX-12696-2226-SM-5EQ65 60-69 years, male 326.0
GTEX-13NYS-1026-SM-5KLZT 60-69 years, male 288.2
GTEX-REY6-2126-SM-48FD9 60-69 years, male 286.7
GTEX-131XF-1926-SM-5DUW4 60-69 years, male 276.2
GTEX-11TT1-2026-SM-5EQM8 20-29 years, male 272.0
GTEX-11O72-2726-SM-5HL6K 40-49 years, male 268.6
GTEX-XPVG-2026-SM-4B65E 50-59 years, male 264.5
GTEX-WFON-1626-SM-4LVMV 40-49 years, male 264.3
GTEX-OOBJ-2026-SM-3NB1R 60-69 years, male 262.7
GTEX-13FHO-2826-SM-5K7ZA 60-69 years, male 247.8
GTEX-111YS-1726-SM-5GIED 60-69 years, male 246.0
GTEX-S95S-1026-SM-4B64M 60-69 years, male 244.1
GTEX-QMRM-1426-SM-4R1K8 50-59 years, male 242.4
GTEX-1399R-0526-SM-5IJEF 30-39 years, male 241.5
GTEX-WK11-2626-SM-4OOSK 50-59 years, male 241.1
GTEX-139T6-1526-SM-5P9G6 50-59 years, male 240.5
GTEX-ZLFU-1726-SM-4WWBU 40-49 years, male 235.5
GTEX-ZTTD-2726-SM-57WFA 50-59 years, male 231.1
GTEX-T8EM-1826-SM-4DM7F 40-49 years, male 228.4
GTEX-S3XE-1326-SM-4AD4H 50-59 years, male 210.7
GTEX-WFG7-1826-SM-3GIL1 20-29 years, male 206.9
GTEX-WFG8-1826-SM-4LVM4 20-29 years, male 205.5
GTEX-117YW-1426-SM-5EGGO 50-59 years, male 198.4
GTEX-11DYG-2526-SM-5N9BB 60-69 years, male 194.8
GTEX-U412-2026-SM-4DXSI 60-69 years, male 184.2
GTEX-11NSD-0826-SM-5986S 20-29 years, male 183.1
GTEX-12BJ1-1226-SM-5LUAE 60-69 years, male 182.2
GTEX-ZPU1-2026-SM-57WFI 40-49 years, male 173.4
GTEX-ZDYS-1226-SM-5IJF3 50-59 years, male 173.0
GTEX-ZTX8-1026-SM-5EGHD 20-29 years, male 168.8
GTEX-14ABY-0726-SM-5Q5DF 50-59 years, male 161.0
GTEX-V955-1826-SM-4JBIL 60-69 years, male 160.3
GTEX-XQ3S-2526-SM-4BOOG 20-29 years, male 150.0
GTEX-14BMV-2326-SM-5RQJ4 50-59 years, male 146.7
GTEX-13FXS-2826-SM-5LZYC 50-59 years, male 140.0
GTEX-13FTW-1226-SM-5LZZ1 40-49 years, male 138.6
GTEX-132QS-1126-SM-5P9GC 60-69 years, male 129.9
GTEX-11EQ9-1726-SM-5HL6U 30-39 years, male 124.0
GTEX-XMK1-1026-SM-4B65H 40-49 years, male 122.7
GTEX-117YX-1526-SM-5H12T 50-59 years, male 116.3
GTEX-OIZH-2026-SM-3NB1M 50-59 years, male 113.2
GTEX-YF7O-1926-SM-4W1YQ 50-59 years, male 111.6
GTEX-U4B1-1426-SM-4DXTX 40-49 years, male 109.8
GTEX-ZY6K-1526-SM-5GZXE 50-59 years, male 109.7
GTEX-145LV-1226-SM-5S2QH 50-59 years, male 106.1
GTEX-ZZ64-0926-SM-5E44L 20-29 years, male 103.2
GTEX-X5EB-1826-SM-4E3K8 40-49 years, male 102.9
GTEX-WH7G-1726-SM-4LVKY 40-49 years, male 102.6
GTEX-12C56-1326-SM-5FQSV 20-29 years, male 101.4
GTEX-SNOS-1026-SM-4DM4Y 40-49 years, male 100.9
GTEX-11P7K-0626-SM-5985Z 30-39 years, male 100.7
GTEX-11ZUS-2126-SM-5N9E6 30-39 years, male 99.8
GTEX-11P82-1126-SM-5BC5K 20-29 years, male 97.0
GTEX-Q2AI-1126-SM-48U19 40-49 years, male 95.8
GTEX-ZVP2-0826-SM-59HJ6 50-59 years, male 94.5
GTEX-145LT-0626-SM-5O99E 40-49 years, male 90.6
GTEX-146FQ-1726-SM-5QGPX 30-39 years, male 87.7
GTEX-144GM-0826-SM-5O98R 20-29 years, male 87.4
GTEX-WZTO-0926-SM-4PQZ3 40-49 years, male 85.7
GTEX-ZT9W-1626-SM-4YCDQ 50-59 years, male 85.7
GTEX-QEG4-2226-SM-4R1JM 30-39 years, male 75.8
GTEX-XOTO-2826-SM-4B65I 50-59 years, male 75.7
GTEX-YB5E-1826-SM-5IFI4 40-49 years, male 70.4
GTEX-S4Q7-1026-SM-4AD75 20-29 years, male 69.8
GTEX-SNMC-0926-SM-4DM5U 20-29 years, male 64.9
GTEX-PLZ6-1126-SM-3P5ZR 30-39 years, male 64.8
GTEX-111FC-2026-SM-5GZYO 60-69 years, male 64.6
GTEX-U3ZM-0926-SM-4DXSW 40-49 years, male 64.1
GTEX-11TUW-2126-SM-5GU7B 60-69 years, male 63.3
GTEX-Y9LG-1826-SM-4VBQC 30-39 years, male 61.7
GTEX-RWSA-2026-SM-47JX8 40-49 years, male 61.3
GTEX-SJXC-2026-SM-4DM6N 60-69 years, male 59.8
GTEX-Y8E4-2126-SM-5RQHO 40-49 years, male 59.3
GTEX-132NY-2826-SM-5P9G2 60-69 years, male 58.1
GTEX-11WQK-2726-SM-5EQMU 50-59 years, male 53.4
GTEX-WOFM-0326-SM-4OOSL 20-29 years, male 45.5
GTEX-QV31-1026-SM-4R1K3 30-39 years, male 40.0
GTEX-NFK9-2226-SM-3MJGP 40-49 years, male 33.7
GTEX-V1D1-1926-SM-4JBGX 50-59 years, male 27.2
GTEX-ZUA1-2826-SM-59HLE 40-49 years, male 18.2
Show all

PROSTATE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

770.0

FANTOM5 sample id

Sample description

Tags Per Million

Prostate
Tags Per Million: 770.0
FF:10022-101D4 73,79,93 years, male 770.0

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