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TISSUE ATLAS PRIMARY DATA SMALL INTESTINE

GENE/PROTEIN

Antibody validation


Dictionary

Small intestine

Tissue proteome

Small intestine

SMALL INTESTINE - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:192.5TPM
GTEx:132.1RPKM
FANTOM5:281.0Tags Per Million

SMALL INTESTINE - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA002265

 

Antibody CAB017621

 

Glandular cells

Low   Not detected  
   
   

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

192.5

overview Male, age 65 Sample 1
TPM: 133.1
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 39 Sample 2
TPM: 158
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 68 Sample 3
TPM: 277.3
Cell types%
Glandular cells: 30
Smooth muscle cells: 15
Other cell types: 55
N/A Male, age 85 Sample 4
TPM: 201.7

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

132.1

GTEx sample id

Sample description

RPKM

Small Intestine - Terminal Ileum
RPKM: 132.1
Samples: 88

Max RPKM: 437.9
Min RPKM: 21.6
Std RPKM: 87.4
Median RPKM: 103.1
GTEX-1192X-2526-SM-59868 50-59 years, male 437.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 425.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 418.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 357.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 350.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 333.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 308.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 261.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 248.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 203.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 197.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 192.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 189.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 188.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 187.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 181.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 178.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 176.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 171.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 167.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 167.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 165.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 163.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 158.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 148.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 147.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 146.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 143.6
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 143.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 142.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 141.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 139.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 139.0
GTEX-ZYWO-1526-SM-5SIAL 40-49 years, female 133.1
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 127.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 125.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 116.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 114.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 114.1
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 109.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 109.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 108.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 105.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 104.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 102.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 101.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 101.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 100.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 96.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 96.7
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 94.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 94.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 93.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 92.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 90.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 90.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 90.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 87.1
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 86.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 85.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 82.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 79.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 79.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 78.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 77.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 76.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 75.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 74.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 73.8
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 71.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 71.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 69.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 69.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 69.0
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 68.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 65.4
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 65.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 59.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 59.2
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 52.5
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 49.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 47.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 47.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 46.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 38.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 34.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 30.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 21.6
Show all

SMALL INTESTINE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

281.0

FANTOM5 sample id

Sample description

Tags Per Million

Small intestine
Tags Per Million: 281.0
FF:10024-101D6 15,40,85 years, mixed 281.0

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.