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TISSUE ATLAS PRIMARY DATA STOMACH

GENE/PROTEIN

Antibody validation


Dictionary

Stomach, lower
Stomach, upper

Tissue proteome

Stomach

STOMACH - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:101.8TPM
GTEx:119.3RPKM

STOMACH 1 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Not detected
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA002265

 

Antibody CAB017621

 

Glandular cells

Not detected   Not detected  
   
   
   

STOMACH 2 - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glandular cells:Low
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA002265

 

Antibody CAB017621

 

Glandular cells

Low   Not detected  
   
   
   

STOMACH - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

101.8

overview Female, age 33 Sample 1
TPM: 84.4
Cell types%
Glandular cells: 60
Smooth muscle cells: 5
Other cell types: 35
N/A Male, age 82 Sample 2
TPM: 122.9
Cell types%
Glandular cells: 65
Smooth muscle cells: 5
Other cell types: 30
overview Male, age 71 Sample 3
TPM: 115.2
Cell types%
Glandular cells: 50
Smooth muscle cells: 5
Other cell types: 45
overview Female, age 66 Sample 4
TPM: 84.7
Cell types%
Glandular cells: 50
Smooth muscle cells: 10
Other cell types: 40

STOMACH - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

119.3

GTEx sample id

Sample description

RPKM

Stomach
RPKM: 119.3
Samples: 193

Max RPKM: 654.7
Min RPKM: 28.4
Std RPKM: 92.0
Median RPKM: 92.8
GTEX-13X6H-1626-SM-5Q5CT 50-59 years, female 654.7
GTEX-12WSJ-0926-SM-5P9JD 40-49 years, female 622.8
GTEX-Y3I4-1626-SM-4TT7W 50-59 years, male 400.6
GTEX-12C56-0526-SM-5FQST 20-29 years, male 376.6
GTEX-13OVI-2426-SM-5KM4J 60-69 years, female 376.6
GTEX-UPK5-2126-SM-4JBJK 40-49 years, male 356.1
GTEX-R55C-1026-SM-48FCM 40-49 years, male 340.7
GTEX-1339X-1426-SM-5K7YO 40-49 years, male 335.8
GTEX-P4QT-1526-SM-3NMCT 50-59 years, female 327.1
GTEX-WH7G-1526-SM-4LVMX 40-49 years, male 319.2
GTEX-1211K-1426-SM-5FQTF 60-69 years, female 305.7
GTEX-UJHI-1026-SM-4IHJP 50-59 years, female 296.4
GTEX-13QJ3-2726-SM-5SI6L 50-59 years, male 272.0
GTEX-ZTX8-0426-SM-59HLG 20-29 years, male 257.4
GTEX-1399U-1626-SM-5P9J3 50-59 years, female 244.3
GTEX-ZPIC-2026-SM-57WG3 40-49 years, female 239.4
GTEX-146FH-2126-SM-5SI9U 50-59 years, female 233.4
GTEX-11WQK-2626-SM-5EQ4K 50-59 years, male 226.2
GTEX-R55G-1126-SM-48FDG 40-49 years, female 225.0
GTEX-139YR-1926-SM-5LZXM 50-59 years, male 224.8
GTEX-13O61-1126-SM-5L3FI 60-69 years, male 220.0
GTEX-146FR-2026-SM-5NQAI 60-69 years, female 215.6
GTEX-13RTK-0226-SM-5RQHR 20-29 years, male 212.0
GTEX-13FH7-1026-SM-5IJGF 50-59 years, female 204.8
GTEX-132AR-2426-SM-5IFFD 50-59 years, female 201.7
GTEX-XV7Q-1326-SM-4BRWM 40-49 years, female 200.5
GTEX-S4Z8-1226-SM-4AD6W 60-69 years, male 195.9
GTEX-P4PQ-1526-SM-3NMCK 60-69 years, male 195.3
GTEX-XAJ8-0326-SM-47JYI 40-49 years, male 192.8
GTEX-14BMV-2226-SM-5RQHX 50-59 years, male 192.1
GTEX-11P82-0726-SM-5PNYL 20-29 years, male 186.2
GTEX-TKQ2-0926-SM-4DXU5 50-59 years, male 179.0
GTEX-WFJO-1126-SM-4LVLZ 30-39 years, male 178.6
GTEX-11VI4-0326-SM-5EQ6L 40-49 years, female 178.1
GTEX-11EQ9-1226-SM-5987E 30-39 years, male 172.6
GTEX-13O3Q-2126-SM-5KM4C 50-59 years, male 161.9
GTEX-131XE-2226-SM-5PNYX 50-59 years, male 161.8
GTEX-SIU7-1426-SM-4BRWT 50-59 years, male 160.7
GTEX-S4P3-0726-SM-4AD57 50-59 years, female 159.6
GTEX-TKQ1-0526-SM-4DXTG 30-39 years, male 158.3
GTEX-145MO-2226-SM-5Q5BN 60-69 years, male 157.3
GTEX-ZE7O-3026-SM-51MS4 50-59 years, female 154.2
GTEX-Y8E4-1526-SM-4WWDI 40-49 years, male 152.9
GTEX-ZV6S-0926-SM-57WGB 40-49 years, female 150.6
GTEX-RTLS-2626-SM-46MUJ 60-69 years, female 150.2
GTEX-11P7K-1726-SM-5GU6F 30-39 years, male 148.6
GTEX-139D8-2326-SM-5IFGE 30-39 years, female 147.5
GTEX-WHWD-1426-SM-4OORU 50-59 years, male 146.2
GTEX-S4Q7-0726-SM-4AD5F 20-29 years, male 145.0
GTEX-13N1W-2026-SM-5K7YU 70-79 years, male 139.9
GTEX-11EI6-2426-SM-5PNVS 60-69 years, male 139.4
GTEX-13111-1226-SM-5GCNC 50-59 years, male 138.2
GTEX-U8T8-1226-SM-4E3IH 60-69 years, male 138.2
GTEX-R55D-1526-SM-48FEJ 50-59 years, male 136.9
GTEX-ZZPU-1426-SM-5GZZ6 50-59 years, female 126.4
GTEX-ZYVF-2726-SM-5GID4 50-59 years, female 126.2
GTEX-Q2AH-1126-SM-48TZM 40-49 years, male 125.3
GTEX-WHPG-0426-SM-4M1XW 50-59 years, male 124.6
GTEX-OXRK-1626-SM-3NB17 50-59 years, female 121.3
GTEX-PLZ6-0826-SM-3P61K 30-39 years, male 119.4
GTEX-QDVN-1226-SM-48TZ5 50-59 years, male 118.7
GTEX-13U4I-2526-SM-5SI8Z 40-49 years, female 118.6
GTEX-13S7M-1826-SM-5RQK6 60-69 years, female 118.1
GTEX-Y5LM-1326-SM-5RQIS 40-49 years, female 117.7
GTEX-V1D1-1726-SM-4JBHB 50-59 years, male 116.6
GTEX-S7SF-0626-SM-4AD4V 20-29 years, female 115.8
GTEX-POMQ-0826-SM-3P61H 20-29 years, female 115.1
GTEX-T5JC-1926-SM-4DM6Q 20-29 years, male 114.5
GTEX-133LE-1326-SM-5IFGO 20-29 years, female 113.8
GTEX-Y5V6-1326-SM-4VDTF 60-69 years, male 113.6
GTEX-QDVJ-1426-SM-48U1Y 50-59 years, male 113.5
GTEX-XBED-1226-SM-4AT5V 60-69 years, male 113.2
GTEX-13CF3-1926-SM-5K7WF 60-69 years, female 113.0
GTEX-P78B-1826-SM-3P5YX 40-49 years, female 111.3
GTEX-UPIC-1826-SM-4IHKC 20-29 years, female 111.2
GTEX-PW2O-1226-SM-48TCH 20-29 years, male 110.3
GTEX-131XF-1226-SM-5HL8V 60-69 years, male 110.2
GTEX-SNOS-0826-SM-4DM5N 40-49 years, male 110.2
GTEX-13PVQ-2126-SM-5L3FW 50-59 years, male 109.8
GTEX-XBEW-1826-SM-4RTWX 40-49 years, male 108.8
GTEX-Y3IK-1426-SM-4YCES 50-59 years, female 106.6
GTEX-Y9LG-1026-SM-5IFJN 30-39 years, male 102.4
GTEX-ZVT3-2126-SM-59HL2 60-69 years, female 102.0
GTEX-ZYY3-1726-SM-5EGH3 60-69 years, female 101.3
GTEX-XQ8I-2026-SM-4BOOL 50-59 years, male 100.8
GTEX-OIZH-1526-SM-3NB1J 50-59 years, male 100.7
GTEX-QCQG-0526-SM-48U2A 50-59 years, female 98.2
GTEX-144GN-1226-SM-5O991 50-59 years, male 97.4
GTEX-12WSD-2326-SM-59HKQ 60-69 years, female 96.7
GTEX-WFG7-1326-SM-4LMK1 20-29 years, male 96.6
GTEX-O5YW-1526-SM-3MJGL 50-59 years, male 95.4
GTEX-XPVG-1526-SM-4B66C 50-59 years, male 94.5
GTEX-YEC3-1426-101806-SM-5PNXX 50-59 years, male 94.3
GTEX-11NUK-2426-SM-5BC4U 50-59 years, male 94.2
GTEX-13113-0726-SM-5LZUF 60-69 years, female 94.1
GTEX-Q734-1026-SM-48U16 40-49 years, female 94.1
GTEX-TMMY-1626-SM-4DXTY 40-49 years, female 92.8
GTEX-ZF2S-1426-SM-57WET 50-59 years, female 92.8
GTEX-ZVZP-1726-SM-5GZWY 50-59 years, male 92.8
GTEX-NFK9-1526-SM-3LK7B 40-49 years, male 92.0
GTEX-14BMU-1126-SM-5RQJ8 20-29 years, female 91.3
GTEX-XUJ4-1226-SM-4BOPD 60-69 years, female 91.3
GTEX-WZTO-2126-SM-4PQYW 40-49 years, male 90.7
GTEX-S4UY-1626-SM-4AD55 40-49 years, female 90.0
GTEX-T8EM-1226-SM-4DM5J 40-49 years, male 89.8
GTEX-VJYA-1026-SM-4KL21 60-69 years, male 88.6
GTEX-WEY5-1226-SM-4LMIQ 40-49 years, female 88.3
GTEX-145LT-1426-SM-5O9B3 40-49 years, male 85.5
GTEX-X15G-1126-SM-4PQZG 50-59 years, female 85.1
GTEX-QLQ7-0826-SM-447B3 60-69 years, male 84.6
GTEX-QMRM-1126-SM-447BN 50-59 years, male 84.6
GTEX-1399S-1626-SM-5P9GI 30-39 years, female 83.9
GTEX-13QBU-1126-SM-5LU44 40-49 years, female 82.7
GTEX-117YX-1026-SM-5H11V 50-59 years, male 81.4
GTEX-SUCS-0926-SM-4DM4Z 70-79 years, male 79.3
GTEX-QXCU-1926-SM-48FE4 50-59 years, male 78.7
GTEX-1399R-1126-SM-5IFIO 30-39 years, male 78.6
GTEX-ZXES-1426-SM-5NQ8S 30-39 years, female 78.0
GTEX-ZP4G-1226-SM-4WWCJ 20-29 years, female 76.7
GTEX-11DXX-1326-SM-5GIDZ 60-69 years, female 76.6
GTEX-RM2N-0826-SM-48FD3 50-59 years, male 75.5
GTEX-ZAB4-1526-SM-5CVN7 40-49 years, male 74.5
GTEX-132QS-1826-SM-5IFFN 60-69 years, male 73.4
GTEX-YJ8A-1526-SM-5P9FT 20-29 years, male 72.0
GTEX-OHPK-1526-SM-3MJGM 50-59 years, female 71.3
GTEX-OOBJ-1526-SM-3NB1Q 60-69 years, male 71.3
GTEX-R53T-1226-SM-48FCT 50-59 years, female 71.3
GTEX-ZQUD-0826-SM-57WDQ 30-39 years, male 69.0
GTEX-U3ZN-2026-SM-4DXUC 30-39 years, female 68.7
GTEX-W5WG-1726-SM-4LMI5 50-59 years, female 68.5
GTEX-145ME-1026-SM-5O9B4 40-49 years, female 68.2
GTEX-SNMC-0626-SM-4DM6H 20-29 years, male 67.3
GTEX-XXEK-0826-SM-4BRWG 50-59 years, male 65.5
GTEX-RU1J-0526-SM-46MUT 20-29 years, female 64.9
GTEX-13D11-2126-SM-5IFH2 50-59 years, female 64.0
GTEX-ZYFG-1326-SM-5GICJ 60-69 years, female 63.8
GTEX-WFON-1126-SM-4LVMA 40-49 years, male 63.5
GTEX-1122O-1926-SM-5EGIQ 60-69 years, female 63.0
GTEX-PWOO-1226-SM-48TCO 40-49 years, female 63.0
GTEX-PWCY-0926-SM-48TD7 20-29 years, female 62.8
GTEX-U4B1-1026-SM-4DXT1 40-49 years, male 62.7
GTEX-V955-1326-SM-4JBHR 60-69 years, male 62.5
GTEX-ZVT2-1626-SM-51MRC 50-59 years, female 61.9
GTEX-131XG-1226-SM-5EGH9 50-59 years, female 61.8
GTEX-144GM-1726-SM-5O9AS 20-29 years, male 60.9
GTEX-QV44-1226-SM-4R1KE 50-59 years, male 60.9
GTEX-12WSG-2026-SM-5FQUU 50-59 years, female 60.4
GTEX-13O21-0926-SM-5IFGT 50-59 years, male 59.6
GTEX-ZY6K-0726-SM-5A5L8 50-59 years, male 59.5
GTEX-12696-1726-SM-5EQLH 60-69 years, male 59.2
GTEX-WRHK-0626-SM-4MVOE 20-29 years, female 58.0
GTEX-ZT9W-1526-SM-4YCDE 50-59 years, male 58.0
GTEX-QLQW-0726-SM-447AA 30-39 years, male 57.3
GTEX-P4PP-1526-SM-3P61M 30-39 years, female 56.6
GTEX-S3XE-1026-SM-4AD4O 50-59 years, male 55.4
GTEX-13FTW-1726-SM-5KM2B 40-49 years, male 55.1
GTEX-PWN1-1526-SM-48TDA 40-49 years, female 54.1
GTEX-Q2AI-0826-SM-48TZO 40-49 years, male 53.2
GTEX-ZA64-0826-SM-5HL9U 20-29 years, male 53.0
GTEX-S341-0626-SM-4AD5T 40-49 years, female 52.9
GTEX-ZZ64-0426-SM-5E43F 20-29 years, male 52.9
GTEX-ZLV1-0826-SM-4WWEQ 60-69 years, female 52.2
GTEX-12WSK-1426-SM-5CVNN 40-49 years, female 51.9
GTEX-S95S-0826-SM-4B64N 60-69 years, male 51.4
GTEX-T6MO-0726-SM-4DM58 40-49 years, female 51.1
GTEX-ZDYS-1926-SM-5HL59 50-59 years, male 51.1
GTEX-YFCO-0826-SM-5LUAG 40-49 years, male 49.6
GTEX-ZLFU-1326-SM-4WWET 40-49 years, male 49.1
GTEX-Y8LW-0826-SM-4WWDO 50-59 years, female 49.0
GTEX-WFG8-1326-SM-4LVN3 20-29 years, male 48.2
GTEX-13OW6-2526-SM-5IJEC 50-59 years, male 47.9
GTEX-Y114-1226-SM-4TT88 50-59 years, female 47.5
GTEX-PX3G-1526-SM-48U11 20-29 years, female 47.2
GTEX-T5JW-0926-SM-4DM5K 20-29 years, female 47.2
GTEX-117YW-2226-SM-5N9DB 50-59 years, male 46.4
GTEX-YEC4-1426-SM-5IFHS 40-49 years, male 46.4
GTEX-11GSP-2126-SM-5HL5E 60-69 years, female 46.2
GTEX-145MN-1326-SM-5NQ9S 30-39 years, male 46.2
GTEX-QV31-0626-SM-447C5 30-39 years, male 44.9
GTEX-11TT1-0726-SM-5GU5A 20-29 years, male 43.2
GTEX-111CU-0926-SM-5EGIK 50-59 years, male 41.2
GTEX-12BJ1-1726-SM-5HL9B 60-69 years, male 40.9
GTEX-13FTX-0726-SM-5N9BI 20-29 years, female 39.7
GTEX-ZVP2-1626-SM-5GU5D 50-59 years, male 39.5
GTEX-11NSD-1426-SM-5HL67 20-29 years, male 38.7
GTEX-111YS-1126-SM-5GZYQ 60-69 years, male 38.1
GTEX-11I78-1726-SM-5A5M3 50-59 years, female 36.8
GTEX-XUZC-0726-SM-4BOPH 30-39 years, female 36.3
GTEX-11EM3-1026-SM-5A5KL 20-29 years, female 36.2
GTEX-UJMC-1226-SM-4IHLI 50-59 years, male 35.3
GTEX-RWS6-0926-SM-47JXE 60-69 years, female 32.5
GTEX-ZV7C-1626-SM-5NQ7E 50-59 years, male 29.3
GTEX-ZPU1-1626-SM-4WWB2 40-49 years, male 28.4
Show all

STOMACH - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

No Fantom CAGE analysis found for this gene / tissue

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