We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Fields »
 

Field

Term
Gene name

Class

Subclass

Chromosome

External id

In atlas

Reliability

Reliability

Reliability

Validation

Method

Validation

Method

Validation

Method

Validation

Location

Searches

Tissue

Cell type

Expression

Tissue

Specificity

Cell line

Specificity

Cancer

Specificity

Tissue

Detectable

Cell line

Detectable

Cancer

Detectable

Cancer

Prognosis

Category

Score

Score

Score

Antibodies

Column

 
 
ABOUT
HELP
BLOG
  • THE HUMAN PROTEOME
  • THE HUMAN TISSUES
  • THE HUMAN CELL
  • HUMAN PATHOLOGY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
    • NEWS
    • BLOG
    • EVENTS
    • PRESS ROOM
    • LEARN
    • DICTIONARY
    • METHODS
    • CELL LINES
  • THE PROJECT
  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • PUBLICATION DATA
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • LINKS
  • CONTACT
  • TECHNICAL DATA
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • DOWNLOADABLE DATA
  • HELP & FAQ
  • LICENCE & CITATION
  • PRIVACY STATEMENT
  • RELEASE HISTORY
BCR
  • TISSUE

  • CELL

  • PATHOLOGY

TISSUE ATLAS PRIMARY DATA CAUDATE

GENE/PROTEIN

Antibody validation


Dictionary

Caudate

CAUDATE - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

GTEx:26.1RPKM
FANTOM5:67.7Tags Per Million

CAUDATE - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Glial cells:Low
Neuronal cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA038337

 

Antibody CAB010421

 

Antibody CAB018545

 

Glial cells

Low   Low   Not detected  

Neuronal cells

Medium   High   Low  
     
     
     

CAUDATE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Pending HPA RNA-seq analysis


CAUDATE - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

26.1

GTEx sample id

Sample description

RPKM

Brain - Caudate (basal ganglia)
RPKM: 26.1
Samples: 117

Max RPKM: 54.1
Min RPKM: 6.2
Std RPKM: 11.5
Median RPKM: 26.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 54.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 50.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 50.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 49.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 48.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 48.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 47.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 45.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 44.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 44.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 43.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 43.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 43.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 43.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 41.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 39.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 38.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 38.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 37.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 37.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 36.2
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 36.1
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 36.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 35.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 35.8
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 35.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 35.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 35.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 34.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 34.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 34.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 34.7
GTEX-RVPU-0011-R5A-SM-2XCAD 50-59 years, male 34.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 32.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 32.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 31.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 31.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 30.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 30.4
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 30.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 30.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 29.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 29.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 29.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 29.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 29.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 29.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 28.4
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 28.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 28.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 27.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 27.4
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 27.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 27.3
GTEX-OHPN-0011-R5A-SM-2I5FF 60-69 years, female 27.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 26.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 26.7
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 26.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 26.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 25.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 25.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 25.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 25.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 25.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 24.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 23.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 22.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 22.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 22.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 22.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 21.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 21.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 21.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 20.3
GTEX-XOTO-0011-R5A-SM-4B657 50-59 years, male 19.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 19.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 19.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 19.3
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 19.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 19.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 19.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 19.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 18.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 17.5
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 17.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 17.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 17.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 17.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 16.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 15.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 15.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 15.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 15.3
GTEX-12WSB-0011-R5b-SM-5GU67 60-69 years, female 15.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 14.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 14.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 13.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 13.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 13.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 12.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 12.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 12.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 12.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 11.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 11.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 11.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 11.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 11.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 10.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 9.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 9.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 9.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 9.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 8.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 8.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 7.1
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 6.2
Show all

CAUDATE - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

67.7

FANTOM5 sample id

Sample description

Tags Per Million

Caudate nucleus
Tags Per Million: 77.4
FF:10164-103B2 76 years, female 77.4

Contact

  • BLOG
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS
  • DOWNLOADABLE DATA

The Human Protein Atlas

  • ANTIBODY AVAILABILITY
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.