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TISSUE ATLAS PRIMARY DATA TESTIS

GENE/PROTEIN

Antibody validation


Dictionary

Testis

Tissue proteome

Testis

TESTIS - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:21.3TPM
GTEx:14.0RPKM
FANTOM5:54.7Tags Per Million

TESTIS - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Cells in seminiferous ducts:Low
Leydig cells:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA039757

 

Cells in seminiferous ducts

Low  

Leydig cells

Medium  
 
 
 

TESTIS - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

21.3

overview Male, age 56 Sample 1
TPM: 20.7
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34 Sample 2
TPM: 23.7
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25
overview Male, age 62 Sample 3
TPM: 22.2
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 34 Sample 4
TPM: 41.4
Cell types%
Cells in seminiferous ducts: 60
Other cell types: 40
overview Male, age 26 Sample 5
TPM: 23.3
Cell types%
Cells in seminiferous ducts: 55
Other cell types: 45
overview Male, age 50 Sample 6
TPM: 23.8
Cell types%
Cells in seminiferous ducts: 85
Other cell types: 15
overview Male, age 37 Sample 7
TPM: 21.9
Cell types%
Cells in seminiferous ducts: 35
Other cell types: 65
overview Male, age 51 Sample 8
TPM: 8
Cell types%
Cells in seminiferous ducts: 65
Other cell types: 35
overview Male, age 34 Sample 9
TPM: 17.7
Cell types%
Cells in seminiferous ducts: 70
Other cell types: 30
overview Male, age 26 Sample 10
TPM: 10.6
Cell types%
Cells in seminiferous ducts: 75
Other cell types: 25

TESTIS - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

14.0

GTEx sample id

Sample description

RPKM

Testis
RPKM: 14.0
Samples: 172

Max RPKM: 24.0
Min RPKM: 8.6
Std RPKM: 3.2
Median RPKM: 13.5
GTEX-RUSQ-2126-SM-47JXK 50-59 years, male 24.0
GTEX-11WQK-2826-SM-5EQKH 50-59 years, male 23.6
GTEX-O5YT-2126-SM-3MJGD 20-29 years, male 23.5
GTEX-U8XE-0126-SM-4E3I3 30-39 years, male 22.5
GTEX-12WSM-1326-SM-5GCP9 60-69 years, male 22.3
GTEX-145LT-0426-SM-5LUAP 40-49 years, male 20.4
GTEX-14A6H-2326-SM-5Q5B5 30-39 years, male 20.4
GTEX-ZT9X-1426-SM-5DUX1 40-49 years, male 20.4
GTEX-13N2G-0126-SM-5N9DV 60-69 years, male 20.3
GTEX-NFK9-0126-SM-3LK5H 40-49 years, male 20.0
GTEX-1339X-1926-SM-5PNVP 40-49 years, male 19.9
GTEX-T5JC-0726-SM-4DM55 20-29 years, male 19.9
GTEX-ZAB4-0126-SM-5CVMG 40-49 years, male 19.9
GTEX-1399Q-2826-SM-5IJEZ 40-49 years, male 19.8
GTEX-U3ZH-1526-SM-4DXV1 30-39 years, male 19.6
GTEX-12WSL-2326-SM-5DUXQ 50-59 years, male 19.3
GTEX-147F4-0626-SM-5LUAK 50-59 years, male 19.2
GTEX-Q2AH-1526-SM-48TZG 40-49 years, male 18.8
GTEX-1399R-1626-SM-5P9GG 30-39 years, male 18.5
GTEX-144GN-1626-SM-5Q5BU 50-59 years, male 18.3
GTEX-SUCS-1326-SM-4DM5T 70-79 years, male 17.7
GTEX-QEG5-0126-SM-4R1JR 20-29 years, male 17.6
GTEX-P4QS-2126-SM-3NMCF 60-69 years, male 17.4
GTEX-S33H-0126-SM-4AD62 30-39 years, male 17.4
GTEX-13OVH-0726-SM-5N9BU 70-79 years, male 17.3
GTEX-X261-2326-SM-4PQYU 50-59 years, male 17.3
GTEX-YJ89-0626-SM-4TT3Z 60-69 years, male 17.1
GTEX-11TT1-2226-SM-5GU6B 20-29 years, male 17.0
GTEX-13OW6-0126-SM-5IJGM 50-59 years, male 17.0
GTEX-U4B1-1526-SM-4DXSL 40-49 years, male 16.8
GTEX-VJYA-1426-SM-4KL1Y 60-69 years, male 16.8
GTEX-ZDTT-2026-SM-5K7TY 60-69 years, male 16.7
GTEX-14753-0626-SM-5Q5CY 60-69 years, male 16.6
GTEX-WFON-2026-SM-4LVMW 40-49 years, male 16.6
GTEX-XQ3S-2726-SM-4BOP2 20-29 years, male 16.6
GTEX-WVLH-2626-SM-4MVNV 50-59 years, male 16.4
GTEX-V955-1926-SM-4KL1L 60-69 years, male 16.3
GTEX-12696-0226-SM-5EGL3 60-69 years, male 16.2
GTEX-11P7K-1026-SM-5HL6Y 30-39 years, male 16.1
GTEX-WFG8-1926-SM-4LVM1 20-29 years, male 16.1
GTEX-11O72-0726-SM-5P9GO 40-49 years, male 16.0
GTEX-12WSH-0326-SM-5GCNH 50-59 years, male 16.0
GTEX-P4QR-0226-SM-3NMCH 60-69 years, male 16.0
GTEX-XPVG-2226-SM-4B65U 50-59 years, male 16.0
GTEX-RWSA-2426-SM-47JXR 40-49 years, male 15.9
GTEX-11ONC-2226-SM-5HL6D 60-69 years, male 15.7
GTEX-13NYB-2226-SM-5MR58 40-49 years, male 15.7
GTEX-111FC-1926-SM-5GZYC 60-69 years, male 15.6
GTEX-131XE-0426-SM-5IJF4 50-59 years, male 15.6
GTEX-OIZI-0126-SM-3NB13 40-49 years, male 15.6
GTEX-OOBK-2126-SM-3LK5T 40-49 years, male 15.6
GTEX-11EQ8-1426-SM-5EGJR 60-69 years, male 15.5
GTEX-RN64-2326-SM-48FDW 50-59 years, male 15.5
GTEX-11LCK-2326-SM-5HL53 30-39 years, male 15.4
GTEX-U3ZM-1626-SM-4DXSK 40-49 years, male 15.4
GTEX-X3Y1-2626-SM-4PQZI 40-49 years, male 15.4
GTEX-XPT6-1626-SM-4B655 20-29 years, male 15.4
GTEX-12WSI-2126-SM-5GCMV 50-59 years, male 15.2
GTEX-QV44-1726-SM-4R1KG 50-59 years, male 15.2
GTEX-S7SE-0326-SM-4AT5Q 50-59 years, male 15.0
GTEX-147JS-0126-SM-5S2TW 60-69 years, male 14.9
GTEX-QLQ7-1426-SM-4R1JX 60-69 years, male 14.9
GTEX-OOBJ-2126-SM-3NB1N 60-69 years, male 14.8
GTEX-ZYFC-0126-SM-5GIEH 50-59 years, male 14.8
GTEX-R55D-0126-SM-48FEL 50-59 years, male 14.7
GTEX-S7PM-0626-SM-4AD4Q 60-69 years, male 14.6
GTEX-WH7G-1926-SM-4LVMM 40-49 years, male 14.6
GTEX-R55E-0726-SM-48FCZ 20-29 years, male 14.5
GTEX-XLM4-1526-SM-4AT6D 60-69 years, male 14.4
GTEX-Y9LG-1726-SM-4VBQE 30-39 years, male 14.4
GTEX-13NZB-2026-SM-5MR4M 30-39 years, male 14.3
GTEX-OHPM-2126-SM-3LK75 50-59 years, male 14.2
GTEX-132QS-1226-SM-5P9GD 60-69 years, male 14.0
GTEX-13NZA-2526-SM-5IJFX 60-69 years, male 13.9
GTEX-SNMC-1026-SM-4DM7K 20-29 years, male 13.9
GTEX-U8T8-1126-SM-4DXUE 60-69 years, male 13.9
GTEX-13111-1526-SM-5EGJX 50-59 years, male 13.8
GTEX-RM2N-1326-SM-48FCW 50-59 years, male 13.8
GTEX-SNOS-1126-SM-4DM67 40-49 years, male 13.8
GTEX-13FTW-1326-SM-5LZZD 40-49 years, male 13.7
GTEX-QEG4-0126-SM-48TZE 30-39 years, male 13.7
GTEX-UPJH-0126-SM-4IHLL 50-59 years, male 13.7
GTEX-V1D1-2126-SM-4JBH4 50-59 years, male 13.7
GTEX-145MO-0126-SM-5S2QU 60-69 years, male 13.6
GTEX-ZUA1-2726-SM-59HLJ 40-49 years, male 13.6
GTEX-11GS4-2026-SM-5N9CP 60-69 years, male 13.5
GTEX-Q2AI-1226-SM-48U14 40-49 years, male 13.5
GTEX-QLQW-1026-SM-447A9 30-39 years, male 13.5
GTEX-WOFM-1126-SM-4OOSB 20-29 years, male 13.5
GTEX-13OW5-2526-SM-5L3I1 60-69 years, male 13.4
GTEX-PLZ5-1526-SM-3P5ZX 50-59 years, male 13.4
GTEX-S95S-1126-SM-4B64E 60-69 years, male 13.4
GTEX-11NSD-1026-SM-5N9BE 20-29 years, male 13.3
GTEX-TKQ1-0926-SM-4DXU2 30-39 years, male 13.2
GTEX-ZAB5-2426-SM-5CVMW 50-59 years, male 13.1
GTEX-11EI6-2226-SM-5EGJM 60-69 years, male 13.0
GTEX-11OF3-1826-SM-5987N 60-69 years, male 13.0
GTEX-R55C-1426-SM-48FED 40-49 years, male 13.0
GTEX-13O61-2026-SM-5J2M6 60-69 years, male 12.9
GTEX-XMK1-2026-SM-4B65K 40-49 years, male 12.9
GTEX-X5EB-2026-SM-4E3KA 40-49 years, male 12.8
GTEX-XBEC-0126-SM-4GIDT 50-59 years, male 12.8
GTEX-13O21-1226-SM-5J2MK 50-59 years, male 12.7
GTEX-13VXU-0726-SM-5J2O7 50-59 years, male 12.7
GTEX-QMRM-1526-SM-4R1K6 50-59 years, male 12.7
GTEX-XGQ4-2026-SM-4AT6G 50-59 years, male 12.7
GTEX-Z93S-1726-SM-5HL8G 50-59 years, male 12.7
GTEX-YB5E-1926-SM-5IFIG 40-49 years, male 12.6
GTEX-YF7O-2026-SM-4W1YE 50-59 years, male 12.6
GTEX-13FLW-2126-SM-5N9FD 50-59 years, male 12.5
GTEX-13O1R-0726-SM-5IJEI 60-69 years, male 12.4
GTEX-Y5V6-1726-SM-4VDSZ 60-69 years, male 12.4
GTEX-11NV4-1726-SM-5N9FC 60-69 years, male 12.3
GTEX-13112-0226-SM-5P9IV 50-59 years, male 12.3
GTEX-ZTX8-1126-SM-51MRM 20-29 years, male 12.3
GTEX-Y111-2426-SM-4TT23 50-59 years, male 12.2
GTEX-13N1W-2626-SM-5IJEP 70-79 years, male 11.9
GTEX-PW2O-1426-SM-48TCD 20-29 years, male 11.9
GTEX-REY6-0126-SM-48FDT 60-69 years, male 11.9
GTEX-WZTO-0326-SM-4PQYZ 40-49 years, male 11.9
GTEX-T8EM-0126-SM-4DM5R 40-49 years, male 11.8
GTEX-111CU-1726-SM-5EGHM 50-59 years, male 11.7
GTEX-144GL-0726-SM-5LU4P 50-59 years, male 11.7
GTEX-TKQ2-1526-SM-4DXUN 50-59 years, male 11.7
GTEX-XAJ8-1326-SM-47JYT 40-49 years, male 11.7
GTEX-ZYT6-2726-SM-5GICP 30-39 years, male 11.7
GTEX-OIZH-2126-SM-3NB1P 50-59 years, male 11.6
GTEX-OXRL-2126-SM-3NM98 50-59 years, male 11.6
GTEX-QV31-1126-SM-4R1K4 30-39 years, male 11.6
GTEX-S3XE-1526-SM-4AD5A 50-59 years, male 11.6
GTEX-ZT9W-2226-SM-57WFU 50-59 years, male 11.6
GTEX-ZVTK-0126-SM-57WDG 20-29 years, male 11.6
GTEX-111YS-2026-SM-5EGGL 60-69 years, male 11.5
GTEX-11NUK-2626-SM-5A5MB 50-59 years, male 11.5
GTEX-XBED-2026-SM-4AT5D 60-69 years, male 11.5
GTEX-ZA64-1626-SM-5CVME 20-29 years, male 11.5
GTEX-117XS-2026-SM-5GID1 60-69 years, male 11.4
GTEX-1212Z-0326-SM-5FQSJ 60-69 years, male 11.4
GTEX-139TT-2226-SM-5LZWO 60-69 years, male 11.4
GTEX-145MH-2326-SM-5O9AW 50-59 years, male 11.1
GTEX-T6MN-2026-SM-4DM7L 50-59 years, male 11.0
GTEX-12C56-1426-SM-5FQSW 20-29 years, male 10.9
GTEX-12ZZY-0126-SM-5LZV2 60-69 years, male 10.9
GTEX-N7MS-0126-SM-3TW8O 60-69 years, male 10.9
GTEX-YEC4-1526-SM-4W1YU 40-49 years, male 10.9
GTEX-ZQUD-2026-SM-51MSM 30-39 years, male 10.9
GTEX-ZVZP-2226-SM-57WBF 50-59 years, male 10.8
GTEX-ZZ64-1126-SM-5GZXY 20-29 years, male 10.7
GTEX-WHSB-2126-SM-4M1XF 50-59 years, male 10.6
GTEX-11P82-1526-SM-5BC5M 20-29 years, male 10.5
GTEX-WK11-0326-SM-4OOS6 50-59 years, male 10.5
GTEX-Y8E4-2226-SM-5LU94 40-49 years, male 10.5
GTEX-YFCO-1726-SM-4W21S 40-49 years, male 10.5
GTEX-ZV7C-2026-SM-5NQ8F 50-59 years, male 10.5
GTEX-13OVL-0426-SM-5IFG6 50-59 years, male 10.4
GTEX-11DXZ-2126-SM-59881 50-59 years, male 10.3
GTEX-11TUW-2226-SM-5EQL9 60-69 years, male 10.3
GTEX-144GM-0426-SM-5Q5C8 20-29 years, male 10.3
GTEX-14ABY-0626-SM-5Q5C9 50-59 years, male 10.3
GTEX-S4Q7-1226-SM-4AD5I 20-29 years, male 10.2
GTEX-139TS-1726-SM-5IJG5 60-69 years, male 10.1
GTEX-13FHP-2826-SM-5IJFW 50-59 years, male 10.0
GTEX-11WQC-2326-SM-5EQKE 60-69 years, male 9.9
GTEX-117YW-1526-SM-5EGGP 50-59 years, male 9.7
GTEX-ZDYS-1326-SM-5IJFF 50-59 years, male 9.6
GTEX-111VG-1926-SM-5GIDO 60-69 years, male 9.5
GTEX-YEC3-1726-SM-5IFIK 50-59 years, male 9.5
GTEX-139T6-1226-SM-5IFFC 50-59 years, male 9.4
GTEX-ZTSS-1526-SM-51MTC 40-49 years, male 9.2
GTEX-11EQ9-1926-SM-5PNVV 30-39 years, male 8.8
GTEX-ZPU1-2126-SM-57WED 40-49 years, male 8.8
GTEX-11ZUS-2726-SM-5FQUA 30-39 years, male 8.6
Show all

TESTIS - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

54.7

FANTOM5 sample id

Sample description

Tags Per Million

Testis
Tags Per Million: 54.7
FF:10026-101D8 34,53,86 years, male 56.2
FF:10096-102C6 14-64 years, male 53.2

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