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RPL17
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TISSUE ATLAS PRIMARY DATA LIVER

GENE/PROTEIN

Antibody validation


Dictionary

Liver

Tissue proteome

Liver

LIVER - Expression summary

Protein expressioni

The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.

h
m
l
n

RNA expressioni

RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.

Read more

HPA:474.9TPM
GTEx:26.3RPKM
FANTOM5:105.9Tags Per Million

LIVER - Annotated protein expressioni

The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.

Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.

The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.

For histological reference, view the histological dictionary.

Annotated protein
expression

Bile duct cells:Not detected
Hepatocytes:Medium
 

Antibody stainingi

This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.

Read more

Antibody HPA043724

 

Antibody HPA046385

 

Bile duct cells

Not detected   Not detected  

Hepatocytes

Medium   Medium  
   
   
   

LIVER - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Read more

Average TPM

474.9

N/A Female, age 60 Sample 1
TPM: 513.4
overview Male, age 54 Sample 2
TPM: 543
Cell types%
Hepatocytes: 80
Fibroblasts: 15
Other cell types: 5
overview Male, age 74 Sample 3
TPM: 526.5
Cell types%
Hepatocytes: 85
Fibroblasts: 5
Other cell types: 10
overview Female, age 62 Sample 4
TPM: 411.3
Cell types%
Hepatocytes: 70
Fibroblasts: 10
Other cell types: 20
overview Male, age 78 Sample 5
TPM: 434.7
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Male, age 53 Sample 6
TPM: 427.4
Cell types%
Hepatocytes: 80
Fibroblasts: 5
Other cell types: 15
overview Male, age 77 Sample 7
TPM: 424.9
Cell types%
Hepatocytes: 75
Fibroblasts: 5
Other cell types: 20
overview Female, age 72 Sample 8
TPM: 461.6
Cell types%
Hepatocytes: 50
Fibroblasts: 10
Other cell types: 40
overview Male, age 70 Sample 9
TPM: 431.2
Cell types%
Hepatocytes: 65
Fibroblasts: 10
Other cell types: 25
overview Female, age 23 Sample 10
TPM: 574.6
Cell types%
Hepatocytes: 70
Fibroblasts: 5
Other cell types: 25

LIVER - GTEx RNA-seqi

RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.

Read more

Average RPKM

26.3

GTEx sample id

Sample description

RPKM

Liver
RPKM: 26.3
Samples: 119

Max RPKM: 61.0
Min RPKM: 6.9
Std RPKM: 10.7
Median RPKM: 24.6
GTEX-ZTPG-1426-SM-51MT3 20-29 years, female 61.0
GTEX-13N11-0926-SM-5IJG2 50-59 years, female 56.3
GTEX-12696-0826-SM-5EGGE 60-69 years, male 56.0
GTEX-S32W-1926-SM-4AD63 50-59 years, female 52.1
GTEX-REY6-1226-SM-48FDR 60-69 years, male 50.5
GTEX-13N2G-0926-SM-5IFGJ 60-69 years, male 49.6
GTEX-YB5E-0326-SM-5IFHU 40-49 years, male 48.6
GTEX-14C38-1526-SM-5RQJ7 50-59 years, male 48.2
GTEX-13NYB-1026-SM-5IFH3 40-49 years, male 47.0
GTEX-1497J-0726-SM-5Q5D1 60-69 years, male 47.0
GTEX-13NZ9-1326-SM-5MR3V 50-59 years, male 44.2
GTEX-UTHO-2426-SM-4JBHD 60-69 years, male 43.2
GTEX-12WSG-0626-SM-5FQTQ 50-59 years, female 40.9
GTEX-QEG4-1826-SM-4R1JN 30-39 years, male 40.6
GTEX-Y5LM-0426-SM-4VBRO 40-49 years, female 39.6
GTEX-ZVT3-1626-SM-5GU66 60-69 years, female 39.5
GTEX-YFC4-1526-SM-5IFJS 40-49 years, female 39.4
GTEX-1269C-0626-SM-5FQSS 60-69 years, female 39.1
GTEX-131XE-0326-SM-5LZVO 50-59 years, male 36.7
GTEX-12WSI-0226-SM-5GCNA 50-59 years, male 36.3
GTEX-QDVN-0826-SM-48TZ2 50-59 years, male 35.8
GTEX-139TS-1426-SM-5IFJD 60-69 years, male 34.1
GTEX-QEL4-1226-SM-447A4 50-59 years, male 34.0
GTEX-145MF-0826-SM-5QGQA 50-59 years, male 32.3
GTEX-132NY-0926-SM-5P9G3 60-69 years, male 31.6
GTEX-12WSM-0726-SM-5GCOW 60-69 years, male 31.0
GTEX-ZYT6-0626-SM-5E45V 30-39 years, male 30.9
GTEX-131YS-1626-SM-5HL6C 60-69 years, female 30.6
GTEX-11WQC-0726-SM-5EQMR 60-69 years, male 30.4
GTEX-14A5I-1726-SM-5QGQ5 50-59 years, female 30.4
GTEX-RTLS-1326-SM-46MUN 60-69 years, female 30.4
GTEX-11OF3-0726-SM-5BC4Z 60-69 years, male 30.3
GTEX-RN64-1826-SM-48FDV 50-59 years, male 30.2
GTEX-X4XY-1626-SM-46MVN 60-69 years, male 30.2
GTEX-131XH-0626-SM-5LZWH 50-59 years, male 29.5
GTEX-146FH-1526-SM-5NQBU 50-59 years, female 29.5
GTEX-S33H-1626-SM-4AD68 30-39 years, male 28.9
GTEX-11ZVC-0726-SM-5FQT9 50-59 years, female 28.7
GTEX-X4EO-1126-SM-4QARQ 60-69 years, female 28.4
GTEX-13FTZ-0726-SM-5IFFY 60-69 years, male 28.2
GTEX-QESD-2026-SM-447BI 20-29 years, male 28.2
GTEX-ZVP2-0626-SM-51MSO 50-59 years, male 27.7
GTEX-12WSL-0226-SM-5CVMJ 50-59 years, male 27.6
GTEX-X261-1726-SM-4PQYT 50-59 years, male 27.6
GTEX-Y5V5-0926-SM-4VBPZ 60-69 years, female 27.3
GTEX-139YR-0226-SM-5IFEM 50-59 years, male 27.0
GTEX-P78B-1326-SM-3P611 40-49 years, female 26.8
GTEX-13FTW-1126-SM-5J2NV 40-49 years, male 26.6
GTEX-11NV4-1326-SM-5HL6V 60-69 years, male 26.5
GTEX-ZF29-2026-SM-4WWB7 60-69 years, female 26.2
GTEX-11ZUS-2526-SM-59872 30-39 years, male 25.8
GTEX-YEC4-0826-SM-5P9FV 40-49 years, male 25.8
GTEX-13112-1426-SM-5EGH8 50-59 years, male 25.7
GTEX-11DXY-0526-SM-5EGGQ 60-69 years, male 25.5
GTEX-1399T-0826-SM-5IFES 60-69 years, male 25.4
GTEX-12KS4-1326-SM-5LUB3 30-39 years, male 25.1
GTEX-13VXU-0926-SM-5IFFH 50-59 years, male 25.1
GTEX-ZVT4-0626-SM-5E45T 50-59 years, female 24.8
GTEX-X4EP-1026-SM-4QAS5 60-69 years, female 24.6
GTEX-ZYY3-0626-SM-5NQ6W 60-69 years, female 24.6
GTEX-13O3O-1826-SM-5IFGW 60-69 years, female 24.5
GTEX-WQUQ-1926-SM-4OOSA 60-69 years, male 24.2
GTEX-14AS3-0126-SM-5Q5F4 40-49 years, female 24.1
GTEX-T6MN-1226-SM-3NMA5 50-59 years, male 23.8
GTEX-U3ZN-0226-SM-3DB8D 30-39 years, female 23.4
GTEX-Q734-0326-SM-48U15 40-49 years, female 22.9
GTEX-TKQ2-1726-SM-4DXUP 50-59 years, male 22.9
GTEX-11NUK-1226-SM-5P9GM 50-59 years, male 22.7
GTEX-11ZTS-1426-SM-5EQMM 60-69 years, female 21.6
GTEX-147JS-1126-SM-5RQIW 60-69 years, male 21.6
GTEX-ZAB4-0826-SM-5LU9D 40-49 years, male 21.5
GTEX-147F4-1426-SM-5LUA8 50-59 years, male 21.4
GTEX-S4Z8-0526-SM-4AD4T 60-69 years, male 21.2
GTEX-11EQ9-0526-SM-5A5JZ 30-39 years, male 21.1
GTEX-13FLV-0326-SM-5N9DJ 50-59 years, male 21.1
GTEX-144GM-1326-SM-5LU5E 20-29 years, male 21.1
GTEX-1212Z-0226-SM-59HLF 60-69 years, male 21.0
GTEX-RU72-1426-SM-46MUF 50-59 years, female 21.0
GTEX-13QJC-0726-SM-5RQJK 60-69 years, female 20.3
GTEX-OOBJ-0826-SM-3NB2K 60-69 years, male 20.2
GTEX-ZZPU-0426-SM-5GZYH 50-59 years, female 20.2
GTEX-WZTO-0626-SM-4PQYY 40-49 years, male 20.1
GTEX-YECK-1926-SM-4W21H 60-69 years, male 20.1
GTEX-SJXC-1226-SM-4DM78 60-69 years, male 19.9
GTEX-139TU-0826-SM-5IJFG 60-69 years, male 19.8
GTEX-13OW6-2626-SM-5IFF2 50-59 years, male 19.8
GTEX-13NZB-0626-SM-5IFH6 30-39 years, male 19.2
GTEX-RNOR-1426-SM-48FDJ 50-59 years, female 19.1
GTEX-XBEC-1526-SM-4AT68 50-59 years, male 18.8
GTEX-WFON-1726-SM-4LVMQ 40-49 years, male 18.7
GTEX-145MO-2326-SM-5NQ9K 60-69 years, male 18.5
GTEX-R53T-0326-SM-48FEC 50-59 years, female 18.2
GTEX-VUSG-0126-SM-4KL1X 50-59 years, male 18.2
GTEX-ZAB5-0426-SM-5CVMI 50-59 years, male 18.2
GTEX-13113-1326-SM-5GCOI 60-69 years, female 17.7
GTEX-Z9EW-0426-SM-5CVM9 40-49 years, male 17.7
GTEX-QV44-0326-SM-4R1KD 50-59 years, male 17.5
GTEX-RM2N-1926-SM-48FCU 50-59 years, male 17.0
GTEX-RWSA-1426-SM-47JXA 40-49 years, male 16.9
GTEX-13PVR-0126-SM-5S2PY 60-69 years, female 16.7
GTEX-14753-1626-SM-5NQ9L 60-69 years, male 16.6
GTEX-Q2AG-1126-SM-48U1P 40-49 years, female 16.6
GTEX-ZPU1-0826-SM-57WG2 40-49 years, male 16.6
GTEX-ZF2S-3026-SM-4WWCH 50-59 years, female 16.4
GTEX-12WSD-1426-SM-5GCN9 60-69 years, female 16.3
GTEX-PX3G-0826-SM-48TZS 20-29 years, female 16.2
GTEX-WYVS-1926-SM-4PQZ2 40-49 years, female 16.0
GTEX-11DXZ-0126-SM-5EGGY 50-59 years, male 14.6
GTEX-12ZZZ-1326-SM-59HKW 60-69 years, male 14.2
GTEX-13SLX-1226-SM-5S2Q6 50-59 years, female 14.0
GTEX-XOTO-0826-SM-4B65O 50-59 years, male 13.9
GTEX-11GSP-0626-SM-5986T 60-69 years, female 13.2
GTEX-UPK5-1426-SM-4JBHH 40-49 years, male 13.2
GTEX-1399R-1226-SM-5P9GF 30-39 years, male 13.1
GTEX-145LU-1326-SM-5LU9N 50-59 years, male 11.8
GTEX-UPIC-0926-SM-4IHLV 20-29 years, female 11.0
GTEX-14DAQ-1726-SM-5S2R2 60-69 years, female 10.0
GTEX-X3Y1-2726-SM-4PQZH 40-49 years, male 10.0
GTEX-14E1K-0326-SM-5S2PE 50-59 years, male 6.9
Show all

LIVER - FANTOM5 CAGEi

Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.

Read more

Average Tags Per Million

105.9

FANTOM5 sample id

Sample description

Tags Per Million

Liver
Tags Per Million: 105.9
FF:10018-101C9 64,69,70 years, mixed 105.9

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