We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival, using best separation (to the left) and median separation (to the right). Patients were divided based on level of expression into one of the two groups "low" or "high". Below each Kaplan-Meier plot, corresponding expression cutoff, 5-year survival for patients with high expression, 5-year survival for patients with low expression and log-rank P value are displayed. For melanoma and glioma, 3-year survival is shown. The survival analysis is described in Assays & Annotation.
The tabs at the top of the survival analysis section can be used to switch between the different cancer subtypes.
Best separation
Median separation
Expression cutoffi
5-year survival for patients with higher expression than the expression cutoff.
91.6 FPKM
99.8 FPKM
3-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
42%
35%
3-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
39%
44%
Log-rank P valuei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
The Scatter Survival plot shows the clinical status for all individuals in the patient cohort, based on the same data as in the Kaplan-Meier plots. Living patients are shown in blue and deceased patients in red. The x-axis shows the expression levels (FPKM) of the investigated gene at the time of diagnosis and the y-axis shows the number of years of survival (living years) after the diagnosis.
Individual patient data is displayed in an interactive plot and can be filtered by clicking on one or several category buttons to the left. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be changed to "x linear" by clicking on the "x log" button on the left. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
Stage:
TCGA RNA samplesi
RNA-seq data is reported as median FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average FPKM
107.9
Number of samples
102
Samples
Sample
Description
FPKM
TCGA-BF-A1Q0-01A
80 years, male, white, stage:iic
362.9
TCGA-EB-A4OZ-01A
42 years, female, white, stage:iiic
274.7
TCGA-EB-A85I-01A
66 years, male, white, stage:iic
240.4
TCGA-EB-A4OY-01A
65 years, female, white, stage:iiib
232.7
TCGA-IH-A3EA-01A
61 years, male, white, stage:iic
213.2
TCGA-EB-A3Y7-01A
86 years, female, white, stage:iiib
204.5
TCGA-EB-A3XE-01A
77 years, female, white, stage:iia
176.9
TCGA-BF-AAP4-01A
61 years, male, white, stage:iic
169.1
TCGA-EB-A3XC-01A
74 years, male, white, stage:iic
167.5
TCGA-EB-A85J-01A
66 years, female, white, stage:iib
165.1
TCGA-BF-AAP7-01A
76 years, female, white, stage:iic
161.4
TCGA-EB-A4P0-01A
82 years, male, white, stage:iic
160.2
TCGA-BF-A9VF-01A
77 years, male, white, stage:iic
159.5
TCGA-BF-AAOU-01A
73 years, female, white, stage:iic
159.3
TCGA-XV-A9W2-01A
81 years, male, white, stage:i
152.3
TCGA-ER-A194-01A
77 years, male, white
151.4
TCGA-EB-A6QZ-01A
76 years, female, white, stage:iia
148.1
TCGA-XV-AAZY-01A
76 years, female, white, stage:iiic
147.4
TCGA-EB-A553-01A
62 years, male, white, stage:iic
139.9
TCGA-GN-A263-01A
24 years, male, white, stage:iv
136.8
TCGA-XV-AAZW-01A
62 years, female, white, stage:ii
133.7
TCGA-DA-A960-01A
73 years, male, white, stage:iib
133.6
TCGA-EB-A3HV-01A
37 years, male, white, stage:iic
132.2
TCGA-BF-A1PZ-01A
71 years, female, white, stage:iib
129.2
TCGA-EB-A41A-01A
90 years, male, white, stage:iic
125.8
TCGA-ER-A2NB-01A
57 years, male, white, stage:iiib
125.0
TCGA-BF-A1PX-01A
56 years, male, white, stage:iiib
124.7
TCGA-EB-A41B-01A
76 years, female, white, stage:iic
123.7
TCGA-FR-A728-01A
54 years, female, white, stage:iiib
119.8
TCGA-EB-A82B-01A
58 years, female, asian, stage:iii
117.6
TCGA-BF-AAP2-01A
62 years, male, white, stage:iib
117.6
TCGA-BF-A5ER-01A
63 years, male, white, stage:iic
113.7
TCGA-EB-A42Z-01A
49 years, male, asian, stage:iiic
113.3
TCGA-EB-A5UM-01A
48 years, female, white, stage:iic
112.5
TCGA-EB-A97M-01A
66 years, male, white, stage:iic
111.8
TCGA-EB-A42Y-01A
73 years, female, asian, stage:iic
110.6
TCGA-EB-A6R0-01A
58 years, female, white, stage:iic
109.6
TCGA-GN-A4U5-01A
61 years, female, white, stage:ib
109.4
TCGA-EB-A3XB-01A
63 years, male, white, stage:ii
107.8
TCGA-WE-A8K4-01A
85 years, male, white, stage:iib
107.3
TCGA-GN-A26C-01A
77 years, male, white, stage:iiic
106.2
TCGA-BF-A1PU-01A
46 years, female, white, stage:iic
106.1
TCGA-EB-A1NK-01A
48 years, male, white, stage:iic
105.3
TCGA-EB-A3XF-01A
57 years, male, white, stage:iic
103.6
TCGA-EB-A44P-01A
58 years, female, white, stage:iic
103.4
TCGA-EB-A6QY-01A
71 years, male, white, stage:iic
102.8
TCGA-EB-A299-01A
63 years, male, white, stage:iia
102.5
TCGA-EB-A57M-01A
56 years, male, asian, stage:iiib
102.1
TCGA-GF-A769-01A
39 years, male, white, stage:iic
101.4
TCGA-EB-A4IS-01A
77 years, male, white, stage:iib
101.0
TCGA-EB-A3Y6-01A
56 years, female, white, stage:iic
100.3
TCGA-EB-A3XD-01A
53 years, female, white, stage:iic
99.3
TCGA-EB-A5VU-01A
56 years, male, asian, stage:iiib
98.6
TCGA-BF-A5EO-01A
65 years, male, white, stage:iic
98.2
TCGA-BF-AAP8-01A
58 years, male, white, stage:iic
95.7
TCGA-XV-AAZV-01A
56 years, female, white, stage:ii
95.5
TCGA-XV-A9W5-01A
51 years, male, white, stage:i/ii nos
95.0
TCGA-BF-A3DJ-01A
36 years, female, white, stage:iiib
93.2
TCGA-FR-A726-01A
90 years, male, white, stage:iic
90.0
TCGA-BF-A3DM-01A
63 years, male, white, stage:iia
89.3
TCGA-BF-A3DL-01A
84 years, female, white, stage:iiib
88.4
TCGA-D9-A4Z2-01A
50 years, male, white, stage:iiic
88.0
TCGA-EB-A51B-01A
53 years, male, white, stage:iic
87.4
TCGA-BF-A5ES-01A
76 years, female, white, stage:iic
85.7
TCGA-EB-A5SF-01A
78 years, female, white, stage:iic
85.4
TCGA-BF-AAOX-01A
83 years, male, white, stage:iic
84.2
TCGA-GN-A8LN-01A
68 years, male, white, stage:iic
81.3
TCGA-BF-AAP6-01A
55 years, male, white, stage:iii
80.5
TCGA-EB-A44N-01A
59 years, male, white, stage:iic
80.4
TCGA-EB-A5SE-01A
73 years, male, white, stage:iib
79.7
TCGA-EB-A4IQ-01A
42 years, female, asian, stage:iiib
78.7
TCGA-FR-A3R1-01A
69 years, male, white, stage:iic
78.3
TCGA-ER-A19K-01A
79 years, female, white, stage:iic
77.6
TCGA-BF-A5EQ-01A
63 years, male, white, stage:iic
77.1
TCGA-BF-AAP1-01A
86 years, male, white, stage:iic
75.1
TCGA-ER-A42H-01A
77 years, male, white
74.5
TCGA-D3-A5GT-01A
43 years, male, white, stage:iiic
74.0
TCGA-HR-A5NC-01A
90 years, female
72.5
TCGA-EB-A82C-01A
70 years, female, asian, stage:iic
72.0
TCGA-FS-A1ZN-01A
43 years, male, white, stage:iiia
71.4
TCGA-EB-A5FP-01A
65 years, female, white, stage:iv
70.5
TCGA-EB-A24C-01A
56 years, male, white
70.2
TCGA-FR-A2OS-01A
49 years, female, white, stage:iic
69.7
TCGA-GF-A2C7-01A
48 years, male, white, stage:iic
69.3
TCGA-EB-A550-01A
75 years, female, white, stage:iic
68.8
TCGA-EB-A551-01A
78 years, female, white, stage:iiic
68.4
TCGA-ER-A196-01A
64 years, female, white, stage:iic
67.4
TCGA-BF-A1PV-01A
74 years, female, white, stage:iic
66.7
TCGA-YG-AA3N-01A
67 years, male, stage:iic
65.8
TCGA-D9-A3Z4-01A
54 years, male, white, stage:iiic
64.7
TCGA-BF-A5EP-01A
75 years, female, white, stage:iiic
63.8
TCGA-EB-A4XL-01A
56 years, female, white, stage:iic
62.9
TCGA-XV-A9VZ-01A
90 years, female, white, stage:ii
58.0
TCGA-BF-A3DN-01A
81 years, female, white, stage:iiic
56.8
TCGA-EB-A431-01A
34 years, male, white, stage:iic
55.6
TCGA-ER-A2NF-01A
53 years, male, white, stage:iiib
54.9
TCGA-FW-A5DX-01A
71 years, male, white, stage:iiic
52.7
TCGA-D9-A4Z3-01A
73 years, female, white, stage:iiic
52.6
TCGA-EB-A24D-01A
72 years, male, white, stage:iiib
51.7
TCGA-EB-A44O-01A
69 years, male, white, stage:iib
50.6
TCGA-ER-A19T-01A
51 years, male, white, stage:iv
45.8
TCGA-D9-A4Z5-01A
68 years, male, white, stage:iib
41.1
Show all
MELANOMA - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.