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COLON - Expression summary

RNA expression
HPA:1.8TPM
GTEx:0.5RPKM
FANTOM5:9.9Tags Per Million

COLON - Annotated protein expression

Pending normal tissue analysis

COLON - HPA RNA-seq

Average TPM

1.8
overview Male, age 54 Sample 1
TPM: 1.8
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 2.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 0.4
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 2.2
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 2
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 1.8
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 2.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 2.5
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 1.9
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 0.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 2.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 1.5
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 1.4
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seq

Average RPKM

0.5

GTEx sample id

Sample description

RPKM
Colon - Sigmoid
RPKM: 0.4
Samples: 149

Max RPKM: 3.5
Min RPKM: 0.0
Std RPKM: 0.4
Median RPKM: 0.3
GTEX-WFON-1326-SM-4LVMN 40-49 years, male 3.5
GTEX-Y5LM-1426-SM-5RQJL 40-49 years, female 1.4
GTEX-YEC3-2026-SM-4WWFL 50-59 years, male 1.4
GTEX-13OVJ-1826-SM-5KM2D 50-59 years, female 1.3
GTEX-13SLW-2826-SM-5Q5ES 70-79 years, male 1.3
GTEX-11EQ9-1526-SM-5PNY7 30-39 years, male 1.2
GTEX-11P81-1426-SM-5P9JN 30-39 years, female 1.2
GTEX-139D8-2926-SM-5IJBM 30-39 years, female 1.1
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 1.1
GTEX-XUZC-1526-SM-4BRV4 30-39 years, female 1.1
Show all
Colon - Transverse
RPKM: 0.5
Samples: 196

Max RPKM: 4.2
Min RPKM: 0.0
Std RPKM: 0.5
Median RPKM: 0.4
GTEX-ZXES-1626-SM-5NQ7L 30-39 years, female 4.2
GTEX-13O3O-2526-SM-5L3DR 60-69 years, female 2.7
GTEX-13OVI-2026-SM-5J1MU 60-69 years, female 2.7
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 2.0
GTEX-117YX-0826-SM-5H11J 50-59 years, male 1.8
GTEX-13OVJ-1726-SM-5IJDZ 50-59 years, female 1.6
GTEX-147F3-1926-SM-5SIB9 50-59 years, female 1.6
GTEX-ZAB4-2226-SM-5HL97 40-49 years, male 1.5
GTEX-11EM3-1526-SM-5A5KN 20-29 years, female 1.4
GTEX-11VI4-1526-SM-5EQKC 40-49 years, female 1.4
Show all

COLON - FANTOM5 CAGE

Average Tags Per Million

9.9

FANTOM5 sample id

Sample description

Tags Per Million
Colon
Tags Per Million: 9.9
FF:10014-101C5 62,83,84 years, mixed 9.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.