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TISSUE ATLAS PRIMARY DATA CEREBRAL CORTEX

GENE/PROTEIN

Antibody validation


Dictionary

Cerebral cortex

Tissue proteome

Brain
Extended brain samples

CEREBRAL CORTEX - Expression summary

Protein expression

h
m
l
n

RNA expression

HPA:134.1TPM
GTEx:61.2RPKM

CEREBRAL CORTEX - Annotated protein expression

Annotated protein
expression

Endothelial cells:Medium
Glial cells:Medium
Neuronal cells:High
Neuropil:Low
 

Antibody staining

Antibody HPA003995

 

Antibody HPA005700

 

Antibody HPA030069

 

Antibody CAB002683

 

Endothelial cells

Low   Medium   Low   Low  

Glial cells

Low   Medium   Not detected   Medium  

Neuronal cells

Medium   High   Medium   High  

Neuropil

Medium   Low   Medium   Medium  
       
       
       

CEREBRAL CORTEX - HPA RNA-seq

Average TPM

134.1

N/A Male, age 5 Sample 1
TPM: 126.9
overview Female, age 40 Sample 2
TPM: 89
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65
overview Male, age 70 Sample 3
TPM: 186.3
Cell types%
Neuronal cells: 35
Glial cells and endothelial cells: 65

CEREBRAL CORTEX - GTEx RNA-seq

Average RPKM

61.2

GTEx sample id

Sample description

RPKM

Brain - Cortex
RPKM: 64.8
Samples: 114

Max RPKM: 107.9
Min RPKM: 23.9
Std RPKM: 12.8
Median RPKM: 64.0
GTEX-X585-3026-SM-46MWF 50-59 years, male 107.9
GTEX-Z93S-2926-SM-57WB9 50-59 years, male 92.5
GTEX-ZVT3-3026-SM-5E43N 60-69 years, female 92.0
GTEX-12ZZW-2926-SM-5LZUP 50-59 years, male 88.7
GTEX-13OW6-3026-SM-5J2MI 50-59 years, male 87.3
GTEX-NPJ8-1526-SM-2D7VU 40-49 years, male 86.7
GTEX-1117F-3226-SM-5N9CT 60-69 years, female 84.1
GTEX-NPJ7-2726-SM-2I3FT 60-69 years, female 83.6
GTEX-11NV4-2126-SM-5N9DS 60-69 years, male 83.3
GTEX-X4XX-3026-SM-3NMB2 60-69 years, male 81.1
GTEX-R55F-1326-SM-5S2V4 50-59 years, male 79.4
GTEX-13NYB-3026-SM-5IJD7 40-49 years, male 79.3
GTEX-ZYFD-3026-SM-5E44C 50-59 years, male 78.6
GTEX-13FHO-3026-SM-5J1O9 60-69 years, male 77.2
GTEX-YJ89-3026-SM-5IFJI 60-69 years, male 76.5
GTEX-Y111-2726-SM-4TT3N 50-59 years, male 76.3
GTEX-13SLX-3126-SM-5S2Q5 50-59 years, female 76.2
GTEX-13X6K-2926-SM-5Q5D5 60-69 years, female 76.2
GTEX-QVJO-1426-SM-2S1QY 60-69 years, female 75.9
GTEX-11EI6-3026-SM-5GZZO 60-69 years, male 75.3
GTEX-13S7M-3126-SM-5RQJQ 60-69 years, female 74.9
GTEX-132Q8-3026-SM-5PNVG 60-69 years, male 74.4
GTEX-14BMV-3026-SM-5S2PQ 50-59 years, male 74.3
GTEX-13O3Q-2926-SM-5KM45 50-59 years, male 74.0
GTEX-11DXW-1126-SM-5H12Q 40-49 years, male 73.9
GTEX-145LS-3126-SM-5Q5BY 60-69 years, female 73.9
GTEX-12ZZX-2926-SM-5GCOQ 40-49 years, female 73.8
GTEX-13OW8-2826-SM-5L3GC 60-69 years, male 72.9
GTEX-XLM4-3026-SM-4AT6L 60-69 years, male 72.9
GTEX-11EMC-3226-SM-5EGKW 60-69 years, female 72.7
GTEX-1192X-3126-SM-5N9BY 50-59 years, male 72.6
GTEX-11OC5-0726-SM-5P9JK 60-69 years, male 72.5
GTEX-145MG-3026-SM-5RQJA 50-59 years, male 72.4
GTEX-ZZPT-3026-SM-5GZXH 50-59 years, male 72.4
GTEX-14ASI-3026-SM-5S2PN 60-69 years, male 72.2
GTEX-13JUV-2926-SM-5LZX7 40-49 years, female 72.1
GTEX-ZE7O-3126-SM-5HL5X 50-59 years, female 71.2
GTEX-147GR-3026-SM-5S2ML 60-69 years, male 71.1
GTEX-QVUS-2826-SM-3GADB 60-69 years, female 70.6
GTEX-13FLW-1426-SM-5K7YE 50-59 years, male 69.7
GTEX-13VXU-2926-SM-5LU5C 50-59 years, male 69.7
GTEX-11PRG-2926-SM-5987A 50-59 years, male 69.1
GTEX-Q2AG-2926-SM-2HMJ3 40-49 years, female 68.6
GTEX-11DXY-3226-SM-5GIDE 60-69 years, male 68.4
GTEX-13FHP-3026-SM-5IJBS 50-59 years, male 68.3
GTEX-ZAK1-3026-SM-5S2MJ 50-59 years, female 68.2
GTEX-13FXS-3126-SM-5J2NN 50-59 years, male 67.9
GTEX-144GL-3026-SM-5Q5CW 50-59 years, male 67.1
GTEX-QDT8-2926-SM-32PKC 30-39 years, female 66.9
GTEX-RU72-3026-SM-5SI7Y 50-59 years, female 66.8
GTEX-1128S-2726-SM-5H12C 60-69 years, female 66.7
GTEX-12WSC-3026-SM-5GCNF 50-59 years, male 66.7
GTEX-WL46-2926-SM-3LK82 50-59 years, male 66.7
GTEX-1399T-3026-SM-5KLZC 60-69 years, male 66.5
GTEX-14A5I-2926-SM-5Q5CQ 50-59 years, female 65.4
GTEX-T5JC-2426-SM-3NMDB 20-29 years, male 65.0
GTEX-13NYS-3126-SM-5KLYV 60-69 years, male 64.3
GTEX-131XW-3126-SM-5LZUC 50-59 years, female 63.8
GTEX-117XS-3026-SM-5N9CA 60-69 years, male 63.5
GTEX-12126-1026-SM-5P9JJ 20-29 years, male 63.5
GTEX-144FL-3026-SM-5O99C 50-59 years, male 63.1
GTEX-145MF-2726-SM-5O995 50-59 years, male 63.1
GTEX-13O3O-3126-SM-5KM3H 60-69 years, female 62.9
GTEX-UTHO-3026-SM-3GAFB 60-69 years, male 62.8
GTEX-11GSO-2926-SM-5HL73 60-69 years, male 62.7
GTEX-T6MN-2626-SM-32PMQ 50-59 years, male 62.5
GTEX-139T8-1026-SM-5J2MC 60-69 years, male 62.1
GTEX-13OVH-3026-SM-5MR4N 70-79 years, male 62.0
GTEX-13PL6-3126-SM-5LUAR 40-49 years, female 62.0
GTEX-11GS4-3126-SM-5A5LH 60-69 years, male 61.6
GTEX-13NYC-2826-SM-5K7WR 60-69 years, male 61.4
GTEX-WZTO-2926-SM-3NM9I 40-49 years, male 61.2
GTEX-13JVG-3126-SM-5L3FH 60-69 years, male 60.8
GTEX-RNOR-2326-SM-2TF4I 50-59 years, female 60.8
GTEX-YFC4-3126-SM-5PNV6 40-49 years, female 60.8
GTEX-ZAJG-3126-SM-5HL9J 50-59 years, female 60.8
GTEX-13QIC-2926-SM-5J2NF 60-69 years, female 60.7
GTEX-WVLH-3026-SM-3MJG9 50-59 years, male 60.7
GTEX-13X6J-3026-SM-5Q5CU 50-59 years, male 60.6
GTEX-Y8DK-0826-SM-4TT3T 60-69 years, male 60.5
GTEX-12WSH-3026-SM-5CVNI 50-59 years, male 60.4
GTEX-ZUA1-3026-SM-59HJC 40-49 years, male 60.3
GTEX-11ZUS-2926-SM-5FQSL 30-39 years, male 60.2
GTEX-12WSD-3126-SM-5HL7P 60-69 years, female 60.2
GTEX-131YS-3126-SM-5KLYT 60-69 years, female 58.7
GTEX-OXRN-2426-SM-2I5EQ 50-59 years, male 58.7
GTEX-XOTO-3026-SM-4B65M 50-59 years, male 58.6
GTEX-12ZZY-3026-SM-5GCOU 60-69 years, male 57.8
GTEX-11NUK-2926-SM-5A5MD 50-59 years, male 56.2
GTEX-T2IS-3026-SM-32QPM 20-29 years, female 55.8
GTEX-12ZZZ-3026-SM-5BC67 60-69 years, male 55.6
GTEX-145MH-3026-SM-5Q5DZ 50-59 years, male 55.6
GTEX-11ONC-2926-SM-5P9JM 60-69 years, male 54.5
GTEX-1313W-3126-SM-5LZUI 50-59 years, female 54.0
GTEX-11TTK-2926-SM-5PNYP 60-69 years, female 52.9
GTEX-TSE9-3026-SM-3DB76 60-69 years, female 52.8
GTEX-WWYW-3126-SM-3NB39 50-59 years, female 52.3
GTEX-111FC-3126-SM-5GZZ2 60-69 years, male 51.0
GTEX-11GSP-3226-SM-5986O 60-69 years, female 49.2
GTEX-QMR6-1426-SM-32PLA 50-59 years, male 48.7
GTEX-1445S-3026-SM-5O9BR 60-69 years, male 48.6
GTEX-12WSA-2926-SM-5EQ4D 60-69 years, male 48.4
GTEX-11WQK-3026-SM-5EQL6 50-59 years, male 46.6
GTEX-WHSE-3026-SM-3P5ZH 20-29 years, male 46.1
GTEX-PVOW-2526-SM-2XCF7 40-49 years, male 45.6
GTEX-13G51-3026-SM-5IJB8 60-69 years, male 45.5
GTEX-PWO3-0926-SM-2I5EY 60-69 years, female 44.8
GTEX-13OVJ-2826-SM-5L3GW 50-59 years, female 44.7
GTEX-N7MT-1126-SM-5SI7V 60-69 years, female 43.8
GTEX-13IVO-2926-SM-5L3CZ 70-79 years, male 42.5
GTEX-13OW7-3026-SM-5L3GY 50-59 years, male 42.2
GTEX-11OF3-2926-SM-5HL78 60-69 years, male 38.1
GTEX-13PVQ-3026-SM-5SI93 50-59 years, male 36.0
GTEX-11O72-2926-SM-5BC4V 40-49 years, male 23.9
Show all
Brain - Frontal Cortex (BA9)
RPKM: 57.4
Samples: 108

Max RPKM: 98.0
Min RPKM: 31.3
Std RPKM: 12.8
Median RPKM: 56.4
GTEX-Z93S-0011-R10a-SM-4RGNM 50-59 years, male 98.0
GTEX-13OW6-0011-R10a-SM-5L3HE 50-59 years, male 88.3
GTEX-ZVT3-0011-R10b-SM-57WB6 60-69 years, female 84.0
GTEX-NL4W-0011-R10A-SM-2I3DY 50-59 years, male 83.6
GTEX-NPJ8-0011-R10A-SM-2YUMO 40-49 years, male 82.4
GTEX-ZAB4-0011-R10a-SM-4SOKH 40-49 years, male 79.1
GTEX-X585-0011-R10A-SM-46MUY 50-59 years, male 77.5
GTEX-131XH-0011-R10a-SM-5EGLJ 50-59 years, male 77.0
GTEX-14BIN-0011-R10a-SM-5S2UA 50-59 years, female 75.0
GTEX-13NYS-0011-R10a-SM-5MR4S 60-69 years, male 73.8
GTEX-13FHO-0011-R10b-SM-5J2MM 60-69 years, male 73.7
GTEX-11WQC-0011-R10a-SM-57WCT 60-69 years, male 73.6
GTEX-139TS-0011-R10a-SM-5K7TU 60-69 years, male 72.3
GTEX-13FXS-0011-R10a-SM-5J2MA 50-59 years, male 70.5
GTEX-13S7M-0011-R10b-SM-5PNZB 60-69 years, female 70.1
GTEX-147GR-0011-R10b-SM-5S2UM 60-69 years, male 69.8
GTEX-X4XX-0011-R10B-SM-46MWO 60-69 years, male 69.4
GTEX-13JUV-0011-R10b-SM-5LZXR 40-49 years, female 68.9
GTEX-13X6K-0011-R10a-SM-5P9JR 60-69 years, female 68.2
GTEX-13SLW-0011-R10a-SM-5S2UI 70-79 years, male 68.1
GTEX-N7MS-0011-R10A-SM-2HMJK 60-69 years, male 67.8
GTEX-12WSC-0011-R10a-SM-5GU57 50-59 years, male 67.2
GTEX-145LS-0011-R10a-SM-5PNUQ 60-69 years, female 67.1
GTEX-12ZZW-0011-R10b-SM-5HL9X 50-59 years, male 66.9
GTEX-145MG-0011-R10a-SM-5PNWG 50-59 years, male 66.6
GTEX-NL3H-0011-R10A-SM-2I3E9 60-69 years, male 66.6
GTEX-13OW8-0011-R10a-SM-5L3H6 60-69 years, male 66.5
GTEX-NPJ7-0011-R10A-SM-2I3E5 60-69 years, female 66.5
GTEX-YJ89-0011-R10a-SM-4SOK9 60-69 years, male 66.4
GTEX-13OVL-0011-R10a-SM-5L3GS 50-59 years, male 65.9
GTEX-ZXG5-0011-R10a-SM-57WDD 60-69 years, male 65.7
GTEX-ZF28-0011-R10a-SM-4WWEH 60-69 years, male 65.3
GTEX-132Q8-0011-R10b-SM-5DUWZ 60-69 years, male 64.7
GTEX-12ZZZ-0011-R10a-SM-5P9HC 60-69 years, male 64.4
GTEX-13X6I-0011-R10a-SM-5PNWI 60-69 years, male 64.2
GTEX-14BIL-0011-R10a-SM-5SI75 50-59 years, male 63.6
GTEX-14ASI-0011-R10b-SM-5S2VZ 60-69 years, male 63.4
GTEX-13O3Q-0011-R10b-SM-5KM39 50-59 years, male 63.1
GTEX-12WSF-0011-R10a-SM-5LZVH 70-79 years, male 62.6
GTEX-ZVZQ-0011-R10b-SM-51MRT 60-69 years, female 61.9
GTEX-12ZZX-0011-R10b-SM-5DUWK 40-49 years, female 61.8
GTEX-XLM4-0011-R10A-SM-4AT5P 60-69 years, male 61.8
GTEX-13OW7-0011-R10a-SM-5L3H3 50-59 years, male 61.0
GTEX-12ZZY-0011-R10b-SM-5HL7W 60-69 years, male 60.4
GTEX-12WSM-0011-R10a-SM-5DUWV 60-69 years, male 60.3
GTEX-1477Z-0011-R10b-SM-5S2RF 60-69 years, male 60.1
GTEX-13RTJ-0011-R10b-SM-5O9CW 60-69 years, male 59.8
GTEX-13FLV-0011-R10b-SM-5LZZ2 50-59 years, male 59.6
GTEX-13O3O-0011-R10a-SM-5LUA9 60-69 years, female 59.6
GTEX-13SLX-0011-R10a-SM-5P9HV 50-59 years, female 58.1
GTEX-12WSH-0011-R10a-SM-5LZUS 50-59 years, male 57.6
GTEX-1313W-0011-R10b-SM-5DUXA 50-59 years, female 56.6
GTEX-131YS-0011-R10b-SM-5EQ5N 60-69 years, female 56.5
GTEX-147F4-0011-R10b-SM-5S2WC 50-59 years, male 56.4
GTEX-N7MT-0011-R10A-SM-2I3E1 60-69 years, female 56.4
GTEX-Y8DK-0011-R10A-SM-4SOK1 60-69 years, male 56.4
GTEX-13X6J-0011-R10b-SM-5PNWA 50-59 years, male 56.3
GTEX-13G51-0011-R10b-SM-5LZYF 60-69 years, male 55.8
GTEX-13FLW-0011-R10b-SM-5LZZF 50-59 years, male 54.9
GTEX-TSE9-0011-R10A-SM-3DB7O 60-69 years, female 54.8
GTEX-YFC4-0011-R10a-SM-4SOK5 40-49 years, female 54.8
GTEX-11H98-0011-R10b-SM-5NQ98 50-59 years, male 54.6
GTEX-12126-0011-R10b-SM-5BC6T 20-29 years, male 54.2
GTEX-WL46-0011-R10A-SM-3MJFQ 50-59 years, male 53.8
GTEX-WZTO-0011-R10B-SM-4E3KB 40-49 years, male 53.8
GTEX-13NYB-0011-R10a-SM-5KM43 40-49 years, male 53.3
GTEX-QVJO-0011-R10A-SM-2S1QJ 60-69 years, female 53.2
GTEX-T5JC-0011-R10A-SM-32PM2 20-29 years, male 53.1
GTEX-ZDXO-0011-R10a-SM-4WWD8 60-69 years, male 53.0
GTEX-OXRN-0011-R10A-SM-2I5GC 50-59 years, male 51.7
GTEX-S7SE-0011-R10A-SM-2XCDF 50-59 years, male 51.2
GTEX-Q2AG-0011-R10A-SM-2HMLA 40-49 years, female 51.0
GTEX-11ZUS-0011-R10b-SM-5BC79 30-39 years, male 50.9
GTEX-13QIC-0011-R10a-SM-5O9C7 60-69 years, female 50.7
GTEX-13JVG-0011-R10b-SM-5KM2P 60-69 years, male 50.0
GTEX-12WSE-0011-R10b-SM-5P9JV 20-29 years, male 49.8
GTEX-13CZV-0011-R10b-SM-5LZYD 60-69 years, male 49.7
GTEX-13FTZ-0011-R10b-SM-5KLZS 60-69 years, male 49.6
GTEX-1445S-0011-R10a-SM-5PNWB 60-69 years, male 49.1
GTEX-XMD1-0011-R10A-SM-4AT4A 60-69 years, male 48.9
GTEX-12WSA-0011-R10b-SM-5P9ET 60-69 years, male 47.9
GTEX-QMR6-0011-R10A-SM-32PKO 50-59 years, male 47.3
GTEX-145MH-0011-R10b-SM-5PNUK 50-59 years, male 46.8
GTEX-12WSD-0011-R10b-SM-5GU79 60-69 years, female 46.5
GTEX-X4EP-0011-R10B-SM-4QASJ 60-69 years, female 46.3
GTEX-T6MN-0011-R10A-SM-32QP7 50-59 years, male 46.1
GTEX-145LU-0011-R10a-SM-5PNWJ 50-59 years, male 45.8
GTEX-X261-0011-R10B-SM-4E3JT 50-59 years, male 45.8
GTEX-11GSP-0011-R10a-SM-5NQ7J 60-69 years, female 45.7
GTEX-QDT8-0011-R10A-SM-32PKG 30-39 years, female 45.4
GTEX-13N1W-0011-R10b-SM-5MR4H 70-79 years, male 44.7
GTEX-P44H-0011-R10A-SM-2XCEK 40-49 years, male 44.5
GTEX-RVPU-0011-R10A-SM-2XCAH 50-59 years, male 44.3
GTEX-ZUA1-0011-R10a-SM-51MT6 40-49 years, male 44.3
GTEX-14753-0011-R10b-SM-5S2WE 60-69 years, male 43.4
GTEX-ZV68-0011-R10a-SM-51MT7 50-59 years, female 43.3
GTEX-13NZA-0011-R10b-SM-5KM54 60-69 years, male 42.2
GTEX-QVUS-0011-R10A-SM-3GIK3 60-69 years, female 41.4
GTEX-11WQK-0011-R10a-SM-5BC6R 50-59 years, male 41.2
GTEX-WVLH-0011-R10A-SM-3MJFM 50-59 years, male 41.1
GTEX-13QJC-0011-R10a-SM-5SI63 60-69 years, female 40.3
GTEX-13OVJ-0011-R10b-SM-5L3HT 50-59 years, female 38.6
GTEX-WWYW-0011-R10A-SM-3NB35 50-59 years, female 37.5
GTEX-131XW-0011-R10a-SM-5DUVA 50-59 years, female 33.9
GTEX-13N2G-0011-R10a-SM-5MR34 60-69 years, male 33.0
GTEX-13IVO-0011-R10a-SM-5LZY3 70-79 years, male 32.6
GTEX-ZE7O-0011-R10a-SM-57WAZ 50-59 years, female 32.6
GTEX-OXRO-0011-R10A-SM-2I5EH 60-69 years, female 31.3
Show all

CEREBRAL CORTEX - FANTOM5 CAGE

No Fantom CAGE analysis found for this gene / tissue

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